RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 SPINT2O43291 252 aa4.12□□□□□ -1.75
USP54-216ENST00000498143 SS18L1O75177 396 aaPredicted RBP4.12□□□□□ -1.75
USP54-216ENST00000498143 IGKCP01834 107 aa4.12□□□□□ -1.75
USP54-216ENST00000498143 ELANEP08246 267 aa4.12□□□□□ -1.75
USP54-216ENST00000498143 SLC25A1P53007 311 aa4.12□□□□□ -1.75
USP54-216ENST00000498143 XGP55808 180 aa4.12□□□□□ -1.75
USP54-216ENST00000498143 PAX8Q06710 450 aa4.12□□□□□ -1.75
USP54-216ENST00000498143 TMEM187Q14656 261 aa4.12□□□□□ -1.75
USP54-216ENST00000498143 KLF17Q5JT82 389 aaPredicted RBP4.12□□□□□ -1.75
USP54-216ENST00000498143 C2orf82Q6UX34 121 aa4.12□□□□□ -1.75
USP54-216ENST00000498143 MARCH3Q86UD3 253 aa4.12□□□□□ -1.75
USP54-216ENST00000498143 GCSAMQ8N6F7 178 aa4.12□□□□□ -1.75
USP54-216ENST00000498143 ARHGAP5-AS1Q96IT6 56 aa4.12□□□□□ -1.75
USP54-216ENST00000498143 PRR25Q96S07 402 aa4.12□□□□□ -1.75
USP54-216ENST00000498143 RPRMQ9NS64 109 aa4.12□□□□□ -1.75
USP54-216ENST00000498143 DEPPQ9NTK1 212 aa4.12□□□□□ -1.75
USP54-216ENST00000498143 LOXHD1Q8IVV2 1947 aa4.12□□□□□ -1.75
USP54-216ENST00000498143 FLG2Q5D862 2391 aaPredicted RBP4.12□□□□□ -1.75
USP54-216ENST00000498143 E7EQL1 145 aa4.12□□□□□ -1.75
USP54-216ENST00000498143 PDCD6O75340 191 aa4.12□□□□□ -1.75
USP54-216ENST00000498143 CD55P08174 381 aa4.12□□□□□ -1.75
USP54-216ENST00000498143 INAFM2P0DMQ5 153 aa4.12□□□□□ -1.75
USP54-216ENST00000498143 GATA1P15976 413 aaPredicted RBP4.12□□□□□ -1.75
USP54-216ENST00000498143 ADMP35318 185 aa4.12□□□□□ -1.75
USP54-216ENST00000498143 HIST1H4AP62805 103 aaKnown RBP4.12□□□□□ -1.75
USP54-216ENST00000498143 RPL23P62829 140 aaKnown RBP4.12□□□□□ -1.75
USP54-216ENST00000498143 ZCCHC24Q8N2G6 241 aaKnown RBP4.12□□□□□ -1.75
USP54-216ENST00000498143 LRTM2Q8N967 370 aa4.12□□□□□ -1.75
USP54-216ENST00000498143 SPTSSBQ8NFR3 76 aa4.12□□□□□ -1.75
USP54-216ENST00000498143 OR10AC1Q8NH08 325 aa4.12□□□□□ -1.75
USP54-216ENST00000498143 B9D2Q9BPU9 175 aa4.12□□□□□ -1.75
USP54-216ENST00000498143 OSTCQ9NRP0 149 aa4.12□□□□□ -1.75
USP54-216ENST00000498143 IL36RNQ9UBH0 155 aa4.12□□□□□ -1.75
USP54-216ENST00000498143 IGHV3-7P01780 117 aa4.12□□□□□ -1.75
USP54-216ENST00000498143 VDAC1P21796 283 aa4.12□□□□□ -1.75
USP54-216ENST00000498143 CX3CL1P78423 397 aa4.12□□□□□ -1.75
USP54-216ENST00000498143 KIAA1644Q3SXP7 199 aa4.12□□□□□ -1.75
USP54-216ENST00000498143 TMEM170BQ5T4T1 132 aa4.12□□□□□ -1.75
USP54-216ENST00000498143 Q6ZT83 130 aa4.12□□□□□ -1.75
USP54-216ENST00000498143 Q6ZVH6 145 aa4.12□□□□□ -1.75
USP54-216ENST00000498143 SH2D6Q7Z4S9 175 aa4.12□□□□□ -1.75
USP54-216ENST00000498143 ABHD14BQ96IU4 210 aa4.12□□□□□ -1.75
USP54-216ENST00000498143 A0A0A6YYD5 115 aa4.12□□□□□ -1.75
USP54-216ENST00000498143 ZIC3O60481 467 aa4.12□□□□□ -1.75
USP54-216ENST00000498143 ASAH2BP0C7U1 165 aa4.12□□□□□ -1.75
USP54-216ENST00000498143 RPS27P42677 84 aaKnown RBP4.12□□□□□ -1.75
USP54-216ENST00000498143 RPL34P49207 117 aaKnown RBP4.12□□□□□ -1.75
USP54-216ENST00000498143 MFAP2P55001 183 aa4.12□□□□□ -1.75
USP54-216ENST00000498143 EFNB3Q15768 340 aa4.12□□□□□ -1.75
USP54-216ENST00000498143 Q6AWC8 147 aa4.12□□□□□ -1.75
USP54-216ENST00000498143 NEGR1Q7Z3B1 354 aa4.12□□□□□ -1.75
USP54-216ENST00000498143 OTOSQ8NHW6 89 aa4.12□□□□□ -1.75
USP54-216ENST00000498143 NPCDR1Q9BY65 106 aa4.12□□□□□ -1.75
USP54-216ENST00000498143 GNB1LQ9BYB4 327 aa4.12□□□□□ -1.75
USP54-216ENST00000498143 HTTP42858 3142 aa4.11□□□□□ -1.75
USP54-216ENST00000498143 SNRNP200O75643 2136 aaKnown RBP4.11□□□□□ -1.75
USP54-216ENST00000498143 AKAP13Q12802 2813 aa4.11□□□□□ -1.75
USP54-216ENST00000498143 H7C2G1 150 aa4.11□□□□□ -1.75
USP54-216ENST00000498143 RNASE2P10153 161 aaKnown RBP4.11□□□□□ -1.75
USP54-216ENST00000498143 FGF12P61328 243 aa4.11□□□□□ -1.75
USP54-216ENST00000498143 RPS11P62280 158 aaKnown RBP eCLIP4.11□□□□□ -1.75
USP54-216ENST00000498143 DEFB112Q30KQ8 113 aa4.11□□□□□ -1.75
USP54-216ENST00000498143 CEND1Q8N111 149 aa4.11□□□□□ -1.75
USP54-216ENST00000498143 C5orf66Q9H5L9 145 aa4.11□□□□□ -1.75
USP54-216ENST00000498143 MRPS36P82909 103 aaKnown RBP4.11□□□□□ -1.75
USP54-216ENST00000498143 PQLC2Q6ZP29 291 aa4.11□□□□□ -1.75
USP54-216ENST00000498143 ZNF493Q6ZR52 646 aa4.11□□□□□ -1.75
USP54-216ENST00000498143 STPG3Q8N7X2 389 aa4.11□□□□□ -1.75
USP54-216ENST00000498143 KLHL30-AS1Q8NEE0 82 aa4.11□□□□□ -1.75
USP54-216ENST00000498143 NUP35Q8NFH5 326 aa4.11□□□□□ -1.75
USP54-216ENST00000498143 C18orf32Q8TCD1 76 aa4.11□□□□□ -1.75
USP54-216ENST00000498143 FMC1Q96HJ9 113 aa4.11□□□□□ -1.75
USP54-216ENST00000498143 NABP2Q9BQ15 211 aa4.11□□□□□ -1.75
USP54-216ENST00000498143 WDR83OSQ9Y284 106 aa4.11□□□□□ -1.75
USP54-216ENST00000498143 C5orf42Q9H799 3197 aa4.11□□□□□ -1.75
USP54-216ENST00000498143 NIPBLQ6KC79 2804 aaeCLIP4.11□□□□□ -1.75
USP54-216ENST00000498143 LCE6AA0A183 80 aa4.11□□□□□ -1.75
USP54-216ENST00000498143 TIMM17BO60830 172 aa4.11□□□□□ -1.75
USP54-216ENST00000498143 NDUFB8O95169 186 aa4.11□□□□□ -1.75
USP54-216ENST00000498143 CCL20P78556 96 aa4.11□□□□□ -1.75
USP54-216ENST00000498143 RIGQ13278 110 aa4.11□□□□□ -1.75
USP54-216ENST00000498143 C1orf140Q5VVS0 124 aa4.11□□□□□ -1.75
USP54-216ENST00000498143 Q6ZPA2 131 aa4.11□□□□□ -1.75
USP54-216ENST00000498143 FOXI2Q6ZQN5 318 aa4.11□□□□□ -1.75
USP54-216ENST00000498143 FAM19A2Q8N3H0 131 aa4.11□□□□□ -1.75
USP54-216ENST00000498143 SERP1Q9Y6X1 66 aa4.11□□□□□ -1.75
USP54-216ENST00000498143 PCDH15Q96QU1 1955 aa4.11□□□□□ -1.75
USP54-216ENST00000498143 TRAV26-2A0A0B4J265 109 aa4.1□□□□□ -1.75
USP54-216ENST00000498143 TRBV5-5A0A0J9YX44 114 aa4.1□□□□□ -1.75
USP54-216ENST00000498143 LOC107984640A0A0U1RRK4 108 aa4.1□□□□□ -1.75
USP54-216ENST00000498143 ZNF815PA8K554 130 aa4.1□□□□□ -1.75
USP54-216ENST00000498143 ZNF146Q15072 292 aa4.1□□□□□ -1.75
USP54-216ENST00000498143 PRSS41Q7RTY9 318 aa4.1□□□□□ -1.75
USP54-216ENST00000498143 Q96M66 194 aa4.1□□□□□ -1.75
USP54-216ENST00000498143 IL36BQ9NZH7 164 aa4.1□□□□□ -1.75
USP54-216ENST00000498143 PFN1P07737 140 aaKnown RBP4.1□□□□□ -1.75
USP54-216ENST00000498143 NANOS3P60323 173 aaKnown RBP4.1□□□□□ -1.75
USP54-216ENST00000498143 Q0VG73 95 aa4.1□□□□□ -1.75
USP54-216ENST00000498143 WFDC2Q14508 124 aa4.1□□□□□ -1.75
USP54-216ENST00000498143 SLC48A1Q6P1K1 146 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms