RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 LOXP28300 417 aaPredicted RBP10.48□□□□□ -0.73
COL6A3-212ENST00000491769 TMEM14BQ9NUH8 114 aa10.48□□□□□ -0.73
COL6A3-212ENST00000491769 CRYGCP07315 174 aa10.48□□□□□ -0.73
COL6A3-212ENST00000491769 SPINK8P0C7L1 97 aa10.47□□□□□ -0.73
COL6A3-212ENST00000491769 SLURP1P55000 103 aa10.47□□□□□ -0.73
COL6A3-212ENST00000491769 ESM1Q9NQ30 184 aa10.47□□□□□ -0.73
COL6A3-212ENST00000491769 PI4KAP42356 2102 aa10.47□□□□□ -0.73
COL6A3-212ENST00000491769 NRGNQ92686 78 aa10.47□□□□□ -0.73
COL6A3-212ENST00000491769 ICOSQ9Y6W8 199 aa10.47□□□□□ -0.73
COL6A3-212ENST00000491769 U3KQE9 123 aa10.47□□□□□ -0.73
COL6A3-212ENST00000491769 HOXB4P17483 251 aaPredicted RBP10.47□□□□□ -0.73
COL6A3-212ENST00000491769 C1orf194Q5T5A4 169 aa10.47□□□□□ -0.73
COL6A3-212ENST00000491769 HIST1H2BKO60814 126 aa10.47□□□□□ -0.73
COL6A3-212ENST00000491769 HIST1H2BJP06899 126 aa10.47□□□□□ -0.73
COL6A3-212ENST00000491769 HIST1H2BOP23527 126 aa10.47□□□□□ -0.73
COL6A3-212ENST00000491769 GRNP28799 593 aaKnown RBP10.47□□□□□ -0.73
COL6A3-212ENST00000491769 HIST1H2BBP33778 126 aa10.47□□□□□ -0.73
COL6A3-212ENST00000491769 ZNF134P52741 427 aa10.47□□□□□ -0.73
COL6A3-212ENST00000491769 HIST1H2BDP58876 126 aa10.47□□□□□ -0.73
COL6A3-212ENST00000491769 HIST1H2BCP62807 126 aa10.47□□□□□ -0.73
COL6A3-212ENST00000491769 HIST2H2BEQ16778 126 aa10.47□□□□□ -0.73
COL6A3-212ENST00000491769 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.47□□□□□ -0.73
COL6A3-212ENST00000491769 ZNF833PQ6ZTB9 187 aa10.47□□□□□ -0.73
COL6A3-212ENST00000491769 HIST1H2BHQ93079 126 aa10.47□□□□□ -0.73
COL6A3-212ENST00000491769 HIST1H2BNQ99877 126 aa10.47□□□□□ -0.73
COL6A3-212ENST00000491769 HIST1H2BMQ99879 126 aa10.47□□□□□ -0.73
COL6A3-212ENST00000491769 MPZP25189 248 aa10.47□□□□□ -0.73
COL6A3-212ENST00000491769 BTCP35070 178 aa10.47□□□□□ -0.73
COL6A3-212ENST00000491769 ETDCA0A1B0GVM5 59 aa10.47□□□□□ -0.73
COL6A3-212ENST00000491769 ATRAIDQ6UW56 229 aa10.47□□□□□ -0.73
COL6A3-212ENST00000491769 J3QRE1 110 aa10.46□□□□□ -0.73
COL6A3-212ENST00000491769 SPART-AS1P0CW21 52 aa10.46□□□□□ -0.74
COL6A3-212ENST00000491769 PLA2G2CQ5R387 149 aa10.46□□□□□ -0.74
COL6A3-212ENST00000491769 POLEQ07864 2286 aa10.46□□□□□ -0.74
COL6A3-212ENST00000491769 FGF16O43320 207 aa10.46□□□□□ -0.74
COL6A3-212ENST00000491769 UBL5Q9BZL1 73 aa10.46□□□□□ -0.74
COL6A3-212ENST00000491769 IGLV3-9A0A075B6K5 115 aa10.45□□□□□ -0.74
COL6A3-212ENST00000491769 LOC285556D6RIA3 1793 aa10.45□□□□□ -0.74
COL6A3-212ENST00000491769 IGHV2-5P01817 119 aa10.45□□□□□ -0.74
COL6A3-212ENST00000491769 CXCL1P09341 107 aa10.45□□□□□ -0.74
COL6A3-212ENST00000491769 TPSG1Q9NRR2 321 aa10.45□□□□□ -0.74
COL6A3-212ENST00000491769 IGHV4-30-2A0A087WSY4 118 aa10.45□□□□□ -0.74
COL6A3-212ENST00000491769 SYS1-DBNDD2H3BUS1 97 aa10.45□□□□□ -0.74
COL6A3-212ENST00000491769 LHFPL1Q86WI0 220 aa10.45□□□□□ -0.74
COL6A3-212ENST00000491769 HEATR1Q9H583 2144 aaKnown RBP10.45□□□□□ -0.74
COL6A3-212ENST00000491769 A0A0G2JRQ6 117 aa10.44□□□□□ -0.74
COL6A3-212ENST00000491769 UBE2AP49459 152 aa10.44□□□□□ -0.74
COL6A3-212ENST00000491769 MORN5Q5VZ52 161 aa10.44□□□□□ -0.74
COL6A3-212ENST00000491769 FOXI2Q6ZQN5 318 aa10.44□□□□□ -0.74
COL6A3-212ENST00000491769 NDUFA4L2Q9NRX3 87 aa10.44□□□□□ -0.74
COL6A3-212ENST00000491769 A0A0G2JMZ2 1700 aa10.44□□□□□ -0.74
COL6A3-212ENST00000491769 LRRC37A2A6NM11 1700 aa10.44□□□□□ -0.74
COL6A3-212ENST00000491769 MRPL53Q96EL3 112 aaKnown RBP10.44□□□□□ -0.74
COL6A3-212ENST00000491769 CAMK2N2Q96S95 79 aa10.44□□□□□ -0.74
COL6A3-212ENST00000491769 SPTBN2O15020 2390 aa10.44□□□□□ -0.74
COL6A3-212ENST00000491769 IGLV10-54A0A075B6I4 117 aa10.44□□□□□ -0.74
COL6A3-212ENST00000491769 NDUFAF3Q9BU61 184 aa10.44□□□□□ -0.74
COL6A3-212ENST00000491769 CEP250Q9BV73 2442 aa10.44□□□□□ -0.74
COL6A3-212ENST00000491769 TRBV19A0A075B6N1 114 aa10.44□□□□□ -0.74
COL6A3-212ENST00000491769 Q6ZR03 302 aa10.44□□□□□ -0.74
COL6A3-212ENST00000491769 FANCD2OSQ96PS1 177 aa10.44□□□□□ -0.74
COL6A3-212ENST00000491769 ARID2Q68CP9 1835 aa10.44□□□□□ -0.74
COL6A3-212ENST00000491769 PRSS46E5RG02 174 aa10.44□□□□□ -0.74
COL6A3-212ENST00000491769 GYPEP15421 78 aa10.44□□□□□ -0.74
COL6A3-212ENST00000491769 C17orf58Q2M2W7 97 aa10.44□□□□□ -0.74
COL6A3-212ENST00000491769 STPG4Q8N801 248 aa10.44□□□□□ -0.74
COL6A3-212ENST00000491769 HERVK_113P63121 156 aa10.43□□□□□ -0.74
COL6A3-212ENST00000491769 GFRA4Q9GZZ7 299 aa10.43□□□□□ -0.74
COL6A3-212ENST00000491769 NDUFA12Q9UI09 145 aa10.43□□□□□ -0.74
COL6A3-212ENST00000491769 FNDC10F2Z333 226 aa10.43□□□□□ -0.74
COL6A3-212ENST00000491769 IGHG4P01861 327 aa10.43□□□□□ -0.74
COL6A3-212ENST00000491769 KIR3DS1Q14943 382 aa10.43□□□□□ -0.74
COL6A3-212ENST00000491769 F6UB75 175 aa10.43□□□□□ -0.74
COL6A3-212ENST00000491769 Q8N8P6 123 aa10.43□□□□□ -0.74
COL6A3-212ENST00000491769 RSPO3Q9BXY4 272 aaPredicted RBP10.43□□□□□ -0.74
COL6A3-212ENST00000491769 ATP5G1P05496 136 aa10.43□□□□□ -0.74
COL6A3-212ENST00000491769 C15orf53Q8NAA6 179 aa10.43□□□□□ -0.74
COL6A3-212ENST00000491769 GREB1Q4ZG55 1949 aa10.42□□□□□ -0.74
COL6A3-212ENST00000491769 IGHV4-61A0A0C4DH41 118 aa10.42□□□□□ -0.74
COL6A3-212ENST00000491769 TINCRA0A1B0GVN0 87 aa10.42□□□□□ -0.74
COL6A3-212ENST00000491769 CHKB-CPT1BH3BT56 60 aa10.42□□□□□ -0.74
COL6A3-212ENST00000491769 IGHV4-38-2P0DP08 117 aa10.42□□□□□ -0.74
COL6A3-212ENST00000491769 DIAPH2-AS1Q14236 149 aa10.42□□□□□ -0.74
COL6A3-212ENST00000491769 MRPL23Q16540 153 aaKnown RBP10.42□□□□□ -0.74
COL6A3-212ENST00000491769 CADP27708 2225 aa10.42□□□□□ -0.74
COL6A3-212ENST00000491769 COX11Q9Y6N1 276 aa10.42□□□□□ -0.74
COL6A3-212ENST00000491769 RALGAPA2Q2PPJ7 1873 aa10.42□□□□□ -0.74
COL6A3-212ENST00000491769 IGLL5B9A064 214 aa10.42□□□□□ -0.74
COL6A3-212ENST00000491769 FAM215AQ9Y5M1 114 aa10.42□□□□□ -0.74
COL6A3-212ENST00000491769 LY96Q9Y6Y9 160 aa10.42□□□□□ -0.74
COL6A3-212ENST00000491769 SPTBN1Q01082 2364 aaKnown RBP10.42□□□□□ -0.74
COL6A3-212ENST00000491769 IGFBPL1Q8WX77 278 aa10.42□□□□□ -0.74
COL6A3-212ENST00000491769 XIRP1Q702N8 1843 aaKnown RBP10.42□□□□□ -0.74
COL6A3-212ENST00000491769 H3BRN7 92 aa10.42□□□□□ -0.74
COL6A3-212ENST00000491769 HIST1H2BLQ99880 126 aa10.42□□□□□ -0.74
COL6A3-212ENST00000491769 CFHR4Q92496 578 aa10.41□□□□□ -0.74
COL6A3-212ENST00000491769 DOCK7Q96N67 2140 aa10.41□□□□□ -0.74
COL6A3-212ENST00000491769 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.41□□□□□ -0.74
COL6A3-212ENST00000491769 IGHV4-28A0A0C4DH34 117 aa10.41□□□□□ -0.74
COL6A3-212ENST00000491769 IGKV2-29A2NJV5 120 aaPredicted RBP10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms