RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 HYLS1Q96M11 299 aa11.71□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 VGLL1Q99990 258 aa11.71□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 C20orf144Q9BQM9 153 aa11.71□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 TMEM167BQ9NRX6 74 aa11.71□□□□□ -0.53
MSH5-SAPCD1-206ENST00000491552 LOC102723971A0A1B0GUV8 181 aa11.7□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 RBAKDNA6NC62 111 aa11.7□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 NUPR2A6NF83 97 aa11.7□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 ZNF705GA8MUZ8 300 aaPredicted RBP11.7□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 J3KRW8 73 aa11.7□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 SEC11BP0C7V7 166 aa11.7□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 EIF5AP63241 154 aaKnown RBP11.7□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 CMTM2Q8TAZ6 248 aa11.7□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 FAM19A4Q96LR4 140 aa11.7□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 LINC01587Q99440 93 aa11.7□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 CELA1Q9UNI1 258 aa11.7□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 DIRC3C9JPN6 131 aa11.69□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 SLC25A5P05141 298 aaKnown RBP11.69□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 EMP1P54849 157 aa11.69□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 IQCF2Q8IXL9 164 aa11.69□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 PHLDA1Q8WV24 401 aaPredicted RBP11.69□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 RPH3ALQ9UNE2 315 aa11.69□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 H7BYZ3 331 aa11.68□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 TPT1P13693 172 aaKnown RBP11.68□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 ZNF138P52744 262 aa11.68□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 TAS2R60P59551 318 aa11.68□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 LGALSLQ3ZCW2 172 aaPredicted RBP11.68□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 CEMP1Q6PRD7 247 aaPredicted RBP11.68□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 ARL6IP6Q8N6S5 226 aa11.68□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 ZNF492Q9P255 531 aa11.68□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 TEX48A0A1B0GUV7 120 aa11.67□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 C7orf71A4D174 169 aa11.67□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 KLLNB2CW77 178 aa11.67□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 PRM2P04554 102 aa11.67□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 SPART-AS1P0CW21 52 aa11.67□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 CRISP2P16562 243 aa11.67□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 Q8TAT8 98 aa11.67□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 STOML3Q8TAV4 291 aa11.67□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 NIPSNAP3BQ9BS92 247 aa11.67□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 YTHDF2Q9Y5A9 579 aaKnown RBP11.67□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 STARD9Q9P2P6 4700 aa11.66□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 TRAV12-3A0A0B4J271 114 aa11.66□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 TRBV7-9A0A0J9YWB2 115 aa11.66□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 A0A1B0GVG6 124 aa11.66□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 MAP1LC3B2A6NCE7 125 aa11.66□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 UMAD1C9J7I0 102 aa11.66□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 NMBP08949 121 aa11.66□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 HTN1P15515 57 aa11.66□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 FGF8P55075 233 aaPredicted RBP11.66□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 GNG5P63218 68 aa11.66□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 BTN1A1Q13410 526 aa11.66□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 Q6ZTC4 211 aa11.66□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 GOLT1AQ6ZVE7 132 aa11.66□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 ZFAND2AQ8N6M9 145 aa11.66□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 MAP1LC3BQ9GZQ8 125 aa11.66□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 PLA2G2EQ9NZK7 142 aa11.66□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 DKK2Q9UBU2 259 aa11.66□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 KLK5Q9Y337 293 aaPredicted RBP11.66□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 CSMD3Q7Z407 3707 aa11.66□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 C11orf94C9JXX5 98 aa11.65□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 GPX1P07203 203 aa11.65□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 AZU1P20160 251 aa11.65□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 CD300CQ08708 224 aa11.65□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 C12orf74Q32Q52 190 aa11.65□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 FAM222AQ5U5X8 452 aa11.65□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 C5orf17Q8NAS9 161 aa11.65□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 TMED6Q8WW62 240 aa11.65□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 C16orf74Q96GX8 76 aa11.65□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 TMPRSS5Q9H3S3 457 aa11.65□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 LENEPQ9Y5L5 61 aa11.65□□□□□ -0.54
MSH5-SAPCD1-206ENST00000491552 SERTM2A0A1B0GWG4 89 aa11.64□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 A0A1W2PRE2 83 aa11.64□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 GGTLC3B5MD39 225 aa11.64□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 RNASE4P34096 147 aaKnown RBP11.64□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 FHITP49789 147 aa11.64□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 SUMO1P63165 101 aaKnown RBP11.64□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 PRR9Q5T870 116 aa11.64□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 ZNF767PQ75MW2 155 aa11.64□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 FAM213BQ8TBF2 198 aa11.64□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 PYGO2Q9BRQ0 406 aa11.64□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 TRAV10A0A0B4J240 114 aa11.63□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 PLAC8L1A1L4L8 177 aa11.63□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 DPPA3Q6W0C5 159 aa11.63□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 ZNF493Q6ZR52 646 aa11.63□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 RNASE8Q8TDE3 154 aaKnown RBP11.63□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 TMEM263Q8WUH6 116 aaKnown RBP11.63□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 LYRM9A8MSI8 78 aa11.62□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 ZNF324O75467 553 aaPredicted RBP11.62□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 TCRAP04437 139 aa11.62□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 UBE2G2P60604 165 aa11.62□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 ZFP69Q49AA0 526 aa11.62□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 EIF5AL1Q6IS14 154 aaKnown RBP11.62□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 CCDC28AQ8IWP9 274 aa11.62□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 EPDR1Q9UM22 224 aa11.62□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 TRAV8-1A0A0A6YYK1 113 aa11.61□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 FAM74A7A6NL05 159 aa11.61□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 K7EQM0 130 aa11.61□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 SLC51BQ86UW2 128 aa11.61□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 C9orf62Q8N4C0 152 aa11.61□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 C2CD4CQ8TF44 421 aa11.61□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 MBD3L1Q8WWY6 194 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 110.6 ms