RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 FBXL15Q9H469 300 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 MRM2Q9UI43 246 aaKnown RBP1.87□□□□□ -2.11
USP48-209ENST00000487880 PXMP4Q9Y6I8 212 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 NINQ8N4C6 2090 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 ADAMTSL1Q8N6G6 1762 aa1.87□□□□□ -2.11
USP48-209ENST00000487880 BPTFQ12830 3046 aa1.86□□□□□ -2.11
USP48-209ENST00000487880 LOC102725191A0A1B0GVB3 256 aa1.86□□□□□ -2.11
USP48-209ENST00000487880 IGLC7A0M8Q6 106 aa1.86□□□□□ -2.11
USP48-209ENST00000487880 TMEM189A5PLL7 270 aa1.86□□□□□ -2.11
USP48-209ENST00000487880 CRYM-AS1A6NIL9 109 aa1.86□□□□□ -2.11
USP48-209ENST00000487880 CPSF4LA6NMK7 179 aaKnown RBP1.86□□□□□ -2.11
USP48-209ENST00000487880 J3QLI3 93 aa1.86□□□□□ -2.11
USP48-209ENST00000487880 HYPMO75409 117 aa1.86□□□□□ -2.11
USP48-209ENST00000487880 MT-CO2P00403 227 aa1.86□□□□□ -2.11
USP48-209ENST00000487880 MT-ND6P03923 174 aa1.86□□□□□ -2.11
USP48-209ENST00000487880 IGKV1-16P04430 117 aa1.86□□□□□ -2.11
USP48-209ENST00000487880 DBIP07108 87 aaKnown RBP1.86□□□□□ -2.11
USP48-209ENST00000487880 PIRTP0C851 137 aa1.86□□□□□ -2.11
USP48-209ENST00000487880 ALOX5APP20292 161 aa1.86□□□□□ -2.11
USP48-209ENST00000487880 BLVRBP30043 206 aaPredicted RBP1.86□□□□□ -2.11
USP48-209ENST00000487880 PPP1CCP36873 323 aaKnown RBP1.86□□□□□ -2.11
USP48-209ENST00000487880 TAS2R30P59541 319 aa1.86□□□□□ -2.11
USP48-209ENST00000487880 RHOBP62745 196 aa1.86□□□□□ -2.11
USP48-209ENST00000487880 SUPT4H1P63272 117 aaKnown RBP1.86□□□□□ -2.11
USP48-209ENST00000487880 SEC11AP67812 179 aa1.86□□□□□ -2.11
USP48-209ENST00000487880 CCL7P80098 99 aa1.86□□□□□ -2.11
USP48-209ENST00000487880 MSMO1Q15800 293 aa1.86□□□□□ -2.11
USP48-209ENST00000487880 HIST3H3Q16695 136 aa1.86□□□□□ -2.11
USP48-209ENST00000487880 IAH1Q2TAA2 248 aaPredicted RBP1.86□□□□□ -2.11
USP48-209ENST00000487880 TMEM249Q2WGJ8 235 aa1.86□□□□□ -2.11
USP48-209ENST00000487880 ARHGAP11BQ3KRB8 267 aa1.86□□□□□ -2.11
USP48-209ENST00000487880 SPATA45Q537H7 98 aa1.86□□□□□ -2.11
USP48-209ENST00000487880 OR10J3Q5JRS4 329 aa1.86□□□□□ -2.11
USP48-209ENST00000487880 LINC01590Q5TEZ4 76 aa1.86□□□□□ -2.11
USP48-209ENST00000487880 FAM151BQ6UXP7 276 aa1.86□□□□□ -2.11
USP48-209ENST00000487880 TRAPPC6BQ86SZ2 158 aa1.86□□□□□ -2.11
USP48-209ENST00000487880 C17orf78Q8N4C9 275 aa1.86□□□□□ -2.11
USP48-209ENST00000487880 DEFB125Q8N687 156 aa1.86□□□□□ -2.11
USP48-209ENST00000487880 ZNF676Q8N7Q3 588 aa1.86□□□□□ -2.11
USP48-209ENST00000487880 OR52R1Q8NGF1 315 aa1.86□□□□□ -2.11
USP48-209ENST00000487880 OR4P4Q8NGL7 312 aa1.86□□□□□ -2.11
USP48-209ENST00000487880 OR11L1Q8NGX0 322 aa1.86□□□□□ -2.11
USP48-209ENST00000487880 OR5AK3PQ8NH89 298 aa1.86□□□□□ -2.11
USP48-209ENST00000487880 FAM213BQ8TBF2 198 aa1.86□□□□□ -2.11
USP48-209ENST00000487880 SLC25A40Q8TBP6 338 aa1.86□□□□□ -2.11
USP48-209ENST00000487880 RAB8BQ92930 207 aa1.86□□□□□ -2.11
USP48-209ENST00000487880 SFRP2Q96HF1 295 aa1.86□□□□□ -2.11
USP48-209ENST00000487880 PMCHL2Q9BQD1 86 aa1.86□□□□□ -2.11
USP48-209ENST00000487880 WFDC6Q9BQY6 131 aa1.86□□□□□ -2.11
USP48-209ENST00000487880 LPAR5Q9H1C0 372 aa1.86□□□□□ -2.11
USP48-209ENST00000487880 C11orf1Q9H5F2 150 aa1.86□□□□□ -2.11
USP48-209ENST00000487880 FAM206AQ9NX38 181 aa1.86□□□□□ -2.11
USP48-209ENST00000487880 AK3Q9UIJ7 227 aa1.86□□□□□ -2.11
USP48-209ENST00000487880 XIRP1Q702N8 1843 aaKnown RBP1.86□□□□□ -2.11
USP48-209ENST00000487880 MCM3APO60318 1980 aa1.85□□□□□ -2.11
USP48-209ENST00000487880 PLXNB2O15031 1838 aa1.85□□□□□ -2.11
USP48-209ENST00000487880 A0A1B0GX12 115 aa1.85□□□□□ -2.11
USP48-209ENST00000487880 ARL5CA6NH57 179 aa1.85□□□□□ -2.11
USP48-209ENST00000487880 TMEM14DPA8MWL7 114 aa1.85□□□□□ -2.11
USP48-209ENST00000487880 ODF3BA8MYP8 253 aa1.85□□□□□ -2.11
USP48-209ENST00000487880 SLC17A3O00476 420 aa1.85□□□□□ -2.11
USP48-209ENST00000487880 DEGS1O15121 323 aa1.85□□□□□ -2.11
USP48-209ENST00000487880 HCRTO43612 131 aa1.85□□□□□ -2.11
USP48-209ENST00000487880 S1PR2O95136 353 aa1.85□□□□□ -2.11
USP48-209ENST00000487880 IFNA5P01569 189 aa1.85□□□□□ -2.11
USP48-209ENST00000487880 HMGN2P05204 90 aaKnown RBP1.85□□□□□ -2.11
USP48-209ENST00000487880 SERPINA7P05543 415 aa1.85□□□□□ -2.11
USP48-209ENST00000487880 GPX1P07203 203 aa1.85□□□□□ -2.11
USP48-209ENST00000487880 IGLC1P0CG04 106 aa1.85□□□□□ -2.11
USP48-209ENST00000487880 SLC25A6P12236 298 aa1.85□□□□□ -2.11
USP48-209ENST00000487880 HIST1H1DP16402 221 aaKnown RBP1.85□□□□□ -2.11
USP48-209ENST00000487880 HIST1H1CP16403 213 aaKnown RBP1.85□□□□□ -2.11
USP48-209ENST00000487880 ATP6V0CP27449 155 aa1.85□□□□□ -2.11
USP48-209ENST00000487880 CA7P43166 264 aa1.85□□□□□ -2.11
USP48-209ENST00000487880 PIGPP57054 158 aa1.85□□□□□ -2.11
USP48-209ENST00000487880 S100A10P60903 97 aa1.85□□□□□ -2.11
USP48-209ENST00000487880 TBPL1P62380 186 aa1.85□□□□□ -2.11
USP48-209ENST00000487880 QRFPP83859 136 aa1.85□□□□□ -2.11
USP48-209ENST00000487880 RUNX1Q01196 453 aa1.85□□□□□ -2.11
USP48-209ENST00000487880 SRSF6Q13247 344 aaKnown RBP1.85□□□□□ -2.11
USP48-209ENST00000487880 BATFQ16520 125 aa1.85□□□□□ -2.11
USP48-209ENST00000487880 PSMG4Q5JS54 123 aa1.85□□□□□ -2.11
USP48-209ENST00000487880 GLYATL3Q5SZD4 288 aa1.85□□□□□ -2.11
USP48-209ENST00000487880 RASL11AQ6T310 242 aa1.85□□□□□ -2.11
USP48-209ENST00000487880 ZNF550Q7Z398 422 aa1.85□□□□□ -2.11
USP48-209ENST00000487880 TMEM25Q86YD3 366 aa1.85□□□□□ -2.11
USP48-209ENST00000487880 SLC22A24Q8N4F4 322 aa1.85□□□□□ -2.11
USP48-209ENST00000487880 ZFAND2AQ8N6M9 145 aa1.85□□□□□ -2.11
USP48-209ENST00000487880 SIGLECL1Q8N7X8 197 aa1.85□□□□□ -2.11
USP48-209ENST00000487880 ST6GALNAC3Q8NDV1 305 aa1.85□□□□□ -2.11
USP48-209ENST00000487880 TSTD1Q8NFU3 115 aa1.85□□□□□ -2.11
USP48-209ENST00000487880 OR5C1Q8NGR4 320 aa1.85□□□□□ -2.11
USP48-209ENST00000487880 OTOSQ8NHW6 89 aa1.85□□□□□ -2.11
USP48-209ENST00000487880 PPTC7Q8NI37 304 aa1.85□□□□□ -2.11
USP48-209ENST00000487880 MRAP2Q96G30 205 aa1.85□□□□□ -2.11
USP48-209ENST00000487880 Q96M85 177 aa1.85□□□□□ -2.11
USP48-209ENST00000487880 SIGMAR1Q99720 223 aa1.85□□□□□ -2.11
USP48-209ENST00000487880 SMIM7Q9BQ49 75 aa1.85□□□□□ -2.11
USP48-209ENST00000487880 MS4A6AQ9H2W1 248 aa1.85□□□□□ -2.11
USP48-209ENST00000487880 ST20Q9HBF5 79 aa1.85□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms