RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 SCO2A0A1W2PP80 73 aa9.01□□□□□ -0.97
SDC1-206ENST00000482879 A8MZ25 164 aa9.01□□□□□ -0.97
SDC1-206ENST00000482879 PDE6DO43924 150 aa9.01□□□□□ -0.97
SDC1-206ENST00000482879 AKR1C3P42330 323 aa9.01□□□□□ -0.97
SDC1-206ENST00000482879 DEFA6Q01524 100 aa9.01□□□□□ -0.97
SDC1-206ENST00000482879 TMEM78Q5T7P6 136 aa9.01□□□□□ -0.97
SDC1-206ENST00000482879 SGK494Q96LW2 274 aa9.01□□□□□ -0.97
SDC1-206ENST00000482879 LINC00479Q96M42 142 aa9.01□□□□□ -0.97
SDC1-206ENST00000482879 CLUHP3Q96NS8 147 aa9.01□□□□□ -0.97
SDC1-206ENST00000482879 TRAV8-1A0A0A6YYK1 113 aa9□□□□□ -0.97
SDC1-206ENST00000482879 A8MTW9 85 aa9□□□□□ -0.97
SDC1-206ENST00000482879 CT45A10P0DMU9 189 aa9□□□□□ -0.97
SDC1-206ENST00000482879 ZNF138P52744 262 aa9□□□□□ -0.97
SDC1-206ENST00000482879 FXYD7P58549 80 aa9□□□□□ -0.97
SDC1-206ENST00000482879 PEA15Q15121 130 aa9□□□□□ -0.97
SDC1-206ENST00000482879 MRAPQ8TCY5 172 aa9□□□□□ -0.97
SDC1-206ENST00000482879 PSG8Q9UQ74 426 aa9□□□□□ -0.97
SDC1-206ENST00000482879 FRMD6-AS1P0C7T7 363 aa8.99□□□□□ -0.97
SDC1-206ENST00000482879 NUTF2P61970 127 aaKnown RBP8.99□□□□□ -0.97
SDC1-206ENST00000482879 FLI1Q01543 452 aaPredicted RBP8.99□□□□□ -0.97
SDC1-206ENST00000482879 MORN3Q6PF18 240 aaPredicted RBP8.99□□□□□ -0.97
SDC1-206ENST00000482879 AMTNQ6UX39 209 aa8.99□□□□□ -0.97
SDC1-206ENST00000482879 LINC00322Q6ZN03 302 aaPredicted RBP8.99□□□□□ -0.97
SDC1-206ENST00000482879 PRNTQ86SH4 94 aa8.99□□□□□ -0.97
SDC1-206ENST00000482879 TMEM75Q8N9X5 138 aa8.99□□□□□ -0.97
SDC1-206ENST00000482879 Q8TAT8 98 aa8.99□□□□□ -0.97
SDC1-206ENST00000482879 C2CD4CQ8TF44 421 aa8.99□□□□□ -0.97
SDC1-206ENST00000482879 C11orf52Q96A22 123 aa8.99□□□□□ -0.97
SDC1-206ENST00000482879 CSTL1Q9H114 145 aa8.99□□□□□ -0.97
SDC1-206ENST00000482879 SLC35B3Q9H1N7 401 aa8.99□□□□□ -0.97
SDC1-206ENST00000482879 MED9Q9NWA0 146 aa8.99□□□□□ -0.97
SDC1-206ENST00000482879 ZNF492Q9P255 531 aa8.99□□□□□ -0.97
SDC1-206ENST00000482879 KIR2DL5BA0A0G2JN68 375 aa8.98□□□□□ -0.97
SDC1-206ENST00000482879 KIR2DL5BA0A0G2JPC4 375 aa8.98□□□□□ -0.97
SDC1-206ENST00000482879 FBLL1A6NHQ2 334 aaKnown RBP8.98□□□□□ -0.97
SDC1-206ENST00000482879 IGLV2-11P01706 119 aa8.98□□□□□ -0.97
SDC1-206ENST00000482879 S100A9P06702 114 aaKnown RBP8.98□□□□□ -0.97
SDC1-206ENST00000482879 TSPOP30536 169 aa8.98□□□□□ -0.97
SDC1-206ENST00000482879 LEPP41159 167 aa8.98□□□□□ -0.97
SDC1-206ENST00000482879 APOC4P55056 127 aa8.98□□□□□ -0.97
SDC1-206ENST00000482879 UBE2G1P62253 170 aa8.98□□□□□ -0.97
SDC1-206ENST00000482879 SRSF3P84103 164 aaKnown RBP8.98□□□□□ -0.97
SDC1-206ENST00000482879 TMEM183BQ1AE95 376 aa8.98□□□□□ -0.97
SDC1-206ENST00000482879 SPINK13Q1W4C9 94 aa8.98□□□□□ -0.97
SDC1-206ENST00000482879 KIR2DL5AQ8N109 375 aa8.98□□□□□ -0.97
SDC1-206ENST00000482879 KIR2DL5BQ8NHK3 375 aa8.98□□□□□ -0.97
SDC1-206ENST00000482879 FMC1Q96HJ9 113 aa8.98□□□□□ -0.97
SDC1-206ENST00000482879 ODF3Q96PU9 254 aa8.98□□□□□ -0.97
SDC1-206ENST00000482879 ASCL2Q99929 193 aa8.98□□□□□ -0.97
SDC1-206ENST00000482879 KLF12Q9Y4X4 402 aa8.98□□□□□ -0.97
SDC1-206ENST00000482879 RAB19A4D1S5 217 aa8.97□□□□□ -0.97
SDC1-206ENST00000482879 TMEM250H0YL14 139 aa8.97□□□□□ -0.97
SDC1-206ENST00000482879 J3KRW8 73 aa8.97□□□□□ -0.97
SDC1-206ENST00000482879 M0R2Z0 102 aa8.97□□□□□ -0.97
SDC1-206ENST00000482879 NDUFS6O75380 124 aaKnown RBP8.97□□□□□ -0.97
SDC1-206ENST00000482879 CA1P00915 261 aaPredicted RBP8.97□□□□□ -0.97
SDC1-206ENST00000482879 SRP19P09132 144 aaKnown RBP8.97□□□□□ -0.97
SDC1-206ENST00000482879 CEBPGP53567 150 aa8.97□□□□□ -0.97
SDC1-206ENST00000482879 FAM19A4Q96LR4 140 aa8.97□□□□□ -0.97
SDC1-206ENST00000482879 NDFIP1Q9BT67 221 aa8.97□□□□□ -0.97
SDC1-206ENST00000482879 SMDT1Q9H4I9 107 aa8.97□□□□□ -0.97
SDC1-206ENST00000482879 XCL2Q9UBD3 114 aa8.97□□□□□ -0.97
SDC1-206ENST00000482879 LENEPQ9Y5L5 61 aa8.97□□□□□ -0.97
SDC1-206ENST00000482879 TRBV7-9A0A0J9YWB2 115 aa8.96□□□□□ -0.98
SDC1-206ENST00000482879 LINC00862A6NCI5 91 aa8.96□□□□□ -0.98
SDC1-206ENST00000482879 C9JQL5 133 aa8.96□□□□□ -0.98
SDC1-206ENST00000482879 UBE2CO00762 179 aa8.96□□□□□ -0.98
SDC1-206ENST00000482879 AMBPP02760 352 aa8.96□□□□□ -0.98
SDC1-206ENST00000482879 GIG44P09565 113 aaPredicted RBP8.96□□□□□ -0.98
SDC1-206ENST00000482879 RPL35P42766 123 aaKnown RBP8.96□□□□□ -0.98
SDC1-206ENST00000482879 CDKN1BP46527 198 aa8.96□□□□□ -0.98
SDC1-206ENST00000482879 Q86TA4 180 aa8.96□□□□□ -0.98
SDC1-206ENST00000482879 TVP23CQ96ET8 276 aa8.96□□□□□ -0.98
SDC1-206ENST00000482879 DERL1Q9BUN8 251 aa8.96□□□□□ -0.98
SDC1-206ENST00000482879 C1QTNF4Q9BXJ3 329 aa8.96□□□□□ -0.98
SDC1-206ENST00000482879 TREM1Q9NP99 234 aa8.96□□□□□ -0.98
SDC1-206ENST00000482879 TRAV12-2A0A075B6T6 113 aa8.95□□□□□ -0.98
SDC1-206ENST00000482879 TRBV6-1A0A0K0K1D8 114 aa8.95□□□□□ -0.98
SDC1-206ENST00000482879 GPX1P07203 203 aa8.95□□□□□ -0.98
SDC1-206ENST00000482879 CRISP2P16562 243 aa8.95□□□□□ -0.98
SDC1-206ENST00000482879 TAS2R60P59551 318 aa8.95□□□□□ -0.98
SDC1-206ENST00000482879 KIR3DS1Q14943 382 aa8.95□□□□□ -0.98
SDC1-206ENST00000482879 ZNF674Q2M3X9 581 aa8.95□□□□□ -0.98
SDC1-206ENST00000482879 SAPCD1Q5SSQ6 148 aa8.95□□□□□ -0.98
SDC1-206ENST00000482879 COMMD7Q86VX2 200 aa8.95□□□□□ -0.98
SDC1-206ENST00000482879 BAGE2Q86Y30 109 aa8.95□□□□□ -0.98
SDC1-206ENST00000482879 ZFAND2AQ8N6M9 145 aa8.95□□□□□ -0.98
SDC1-206ENST00000482879 C8orf49Q96NF6 230 aa8.95□□□□□ -0.98
SDC1-206ENST00000482879 ZFP30Q9Y2G7 519 aa8.95□□□□□ -0.98
SDC1-206ENST00000482879 CRXO43186 299 aaPredicted RBP8.94□□□□□ -0.98
SDC1-206ENST00000482879 LTAP01374 205 aa8.94□□□□□ -0.98
SDC1-206ENST00000482879 RNASE4P34096 147 aaKnown RBP8.94□□□□□ -0.98
SDC1-206ENST00000482879 IGF2BP2-AS1Q96M15 143 aa8.94□□□□□ -0.98
SDC1-206ENST00000482879 PARLQ9H300 379 aa8.94□□□□□ -0.98
SDC1-206ENST00000482879 C7orf71A4D174 169 aa8.93□□□□□ -0.98
SDC1-206ENST00000482879 KLLNB2CW77 178 aa8.93□□□□□ -0.98
SDC1-206ENST00000482879 INSP01308 110 aa8.93□□□□□ -0.98
SDC1-206ENST00000482879 GNG4P50150 75 aa8.93□□□□□ -0.98
SDC1-206ENST00000482879 BTN1A1Q13410 526 aa8.93□□□□□ -0.98
SDC1-206ENST00000482879 SMUG1Q53HV7 270 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms