RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 MIR22HGQ0VDD5 57 aa1.65□□□□□ -2.15
UPF3B-203ENST00000478840 DIAPH2-AS1Q14236 149 aa1.65□□□□□ -2.15
UPF3B-203ENST00000478840 SPRNQ5BIV9 151 aa1.65□□□□□ -2.15
UPF3B-203ENST00000478840 OR8I2Q8N0Y5 310 aa1.65□□□□□ -2.15
UPF3B-203ENST00000478840 CLEC2BQ92478 149 aa1.65□□□□□ -2.15
UPF3B-203ENST00000478840 ODF3Q96PU9 254 aa1.65□□□□□ -2.15
UPF3B-203ENST00000478840 HEATR1Q9H583 2144 aaKnown RBP1.65□□□□□ -2.15
UPF3B-203ENST00000478840 PTPRFP10586 1907 aa1.64□□□□□ -2.15
UPF3B-203ENST00000478840 POLEQ07864 2286 aa1.64□□□□□ -2.15
UPF3B-203ENST00000478840 C5orf58C9J3I9 102 aa1.64□□□□□ -2.15
UPF3B-203ENST00000478840 DPM2O94777 84 aa1.64□□□□□ -2.15
UPF3B-203ENST00000478840 IGHV3-33P01772 117 aa1.64□□□□□ -2.15
UPF3B-203ENST00000478840 BRK1Q8WUW1 75 aa1.64□□□□□ -2.15
UPF3B-203ENST00000478840 TMEM14CQ9P0S9 112 aa1.64□□□□□ -2.15
UPF3B-203ENST00000478840 IGLV3-32A0A0A0MS00 114 aa1.63□□□□□ -2.15
UPF3B-203ENST00000478840 M0QZK8 103 aa1.63□□□□□ -2.15
UPF3B-203ENST00000478840 CCL4P13236 92 aa1.63□□□□□ -2.15
UPF3B-203ENST00000478840 LSM3P62310 102 aaKnown RBP1.63□□□□□ -2.15
UPF3B-203ENST00000478840 CCDC153Q494R4 210 aa1.63□□□□□ -2.15
UPF3B-203ENST00000478840 HAGHLQ6PII5 290 aaPredicted RBP1.63□□□□□ -2.15
UPF3B-203ENST00000478840 OR5AK2Q8NH90 309 aa1.63□□□□□ -2.15
UPF3B-203ENST00000478840 USP54Q70EL1 1684 aa1.63□□□□□ -2.15
UPF3B-203ENST00000478840 TRAV16A0A0A6YYK6 109 aaPredicted RBP1.62□□□□□ -2.15
UPF3B-203ENST00000478840 TNFSF15O95150 251 aa1.62□□□□□ -2.15
UPF3B-203ENST00000478840 DNAL4O96015 105 aa1.62□□□□□ -2.15
UPF3B-203ENST00000478840 KRTAP21-2Q3LI59 83 aa1.62□□□□□ -2.15
UPF3B-203ENST00000478840 OR51A4Q8NGJ6 313 aa1.62□□□□□ -2.15
UPF3B-203ENST00000478840 NABP2Q9BQ15 211 aa1.62□□□□□ -2.15
UPF3B-203ENST00000478840 TMEM138Q9NPI0 162 aa1.62□□□□□ -2.15
UPF3B-203ENST00000478840 DSPPQ9NZW4 1301 aa1.62□□□□□ -2.15
UPF3B-203ENST00000478840 HELZ2Q9BYK8 2649 aaKnown RBP1.61□□□□□ -2.15
UPF3B-203ENST00000478840 TECTAO75443 2155 aa1.61□□□□□ -2.15
UPF3B-203ENST00000478840 FHAD1B1AJZ9 1412 aa1.61□□□□□ -2.15
UPF3B-203ENST00000478840 ERBINQ96RT1 1412 aa1.61□□□□□ -2.15
UPF3B-203ENST00000478840 LOC107986453A0A1B0GWG9 222 aa1.61□□□□□ -2.15
UPF3B-203ENST00000478840 UQCRQO14949 82 aa1.61□□□□□ -2.15
UPF3B-203ENST00000478840 DBIP07108 87 aaKnown RBP1.61□□□□□ -2.15
UPF3B-203ENST00000478840 SDC4P31431 198 aa1.61□□□□□ -2.15
UPF3B-203ENST00000478840 KRTAP10-4P60372 401 aaPredicted RBP1.61□□□□□ -2.15
UPF3B-203ENST00000478840 GLIPR1L1Q6UWM5 242 aa1.61□□□□□ -2.15
UPF3B-203ENST00000478840 ZCCHC23Q6ZST2 131 aa1.61□□□□□ -2.15
UPF3B-203ENST00000478840 HSPB8Q9UJY1 196 aa1.61□□□□□ -2.15
UPF3B-203ENST00000478840 DLG5Q8TDM6 1919 aa1.61□□□□□ -2.15
UPF3B-203ENST00000478840 ARHGEF10O15013 1369 aa1.6□□□□□ -2.15
UPF3B-203ENST00000478840 A0A096LPI6 279 aa1.6□□□□□ -2.15
UPF3B-203ENST00000478840 TMEM189A5PLL7 270 aa1.6□□□□□ -2.15
UPF3B-203ENST00000478840 C9JAW5 83 aa1.6□□□□□ -2.15
UPF3B-203ENST00000478840 HBDP02042 147 aa1.6□□□□□ -2.15
UPF3B-203ENST00000478840 MORN2Q502X0 79 aa1.6□□□□□ -2.15
UPF3B-203ENST00000478840 PLPP5Q8NEB5 264 aa1.6□□□□□ -2.15
UPF3B-203ENST00000478840 FKBP11Q9NYL4 201 aa1.6□□□□□ -2.15
UPF3B-203ENST00000478840 HIGD1AQ9Y241 93 aa1.6□□□□□ -2.15
UPF3B-203ENST00000478840 TANC2Q9HCD6 1990 aa1.59□□□□□ -2.15
UPF3B-203ENST00000478840 ARPC5O15511 151 aa1.59□□□□□ -2.15
UPF3B-203ENST00000478840 SLC25A4P12235 298 aa1.59□□□□□ -2.15
UPF3B-203ENST00000478840 CASC2Q6XLA1 102 aa1.59□□□□□ -2.15
UPF3B-203ENST00000478840 TNFSF18Q9UNG2 199 aa1.59□□□□□ -2.15
UPF3B-203ENST00000478840 MPC1Q9Y5U8 109 aa1.59□□□□□ -2.15
UPF3B-203ENST00000478840 ZFC3H1O60293 1989 aaKnown RBP1.59□□□□□ -2.16
UPF3B-203ENST00000478840 UNC13CQ8NB66 2214 aa1.59□□□□□ -2.16
UPF3B-203ENST00000478840 COL6A6A6NMZ7 2263 aa1.59□□□□□ -2.16
UPF3B-203ENST00000478840 MYO18AQ92614 2054 aaKnown RBP1.59□□□□□ -2.16
UPF3B-203ENST00000478840 CEP152O94986 1710 aa1.58□□□□□ -2.16
UPF3B-203ENST00000478840 PEAK1Q9H792 1746 aa1.58□□□□□ -2.16
UPF3B-203ENST00000478840 CASP8AP2Q9UKL3 1982 aa1.58□□□□□ -2.16
UPF3B-203ENST00000478840 A0A1B0GW64 132 aa1.58□□□□□ -2.16
UPF3B-203ENST00000478840 JMJD7-PLA2G4BH0Y9G9 81 aa1.58□□□□□ -2.16
UPF3B-203ENST00000478840 KLF7O75840 302 aaPredicted RBP1.58□□□□□ -2.16
UPF3B-203ENST00000478840 SLC25A5P05141 298 aaKnown RBP1.58□□□□□ -2.16
UPF3B-203ENST00000478840 BLCAPP62952 87 aa1.58□□□□□ -2.16
UPF3B-203ENST00000478840 QRFPP83859 136 aa1.58□□□□□ -2.16
UPF3B-203ENST00000478840 ASB16-AS1Q495Z4 193 aa1.58□□□□□ -2.16
UPF3B-203ENST00000478840 CCSMST1Q4G0I0 132 aa1.58□□□□□ -2.16
UPF3B-203ENST00000478840 IZUMO2Q6UXV1 221 aa1.58□□□□□ -2.16
UPF3B-203ENST00000478840 TCTE3Q8IZS6 198 aa1.58□□□□□ -2.16
UPF3B-203ENST00000478840 CIB3Q96Q77 187 aaPredicted RBP1.58□□□□□ -2.16
UPF3B-203ENST00000478840 C22orf24Q9Y442 160 aa1.58□□□□□ -2.16
UPF3B-203ENST00000478840 FLG2Q5D862 2391 aaPredicted RBP1.58□□□□□ -2.16
UPF3B-203ENST00000478840 WDR97A6NE52 1622 aa1.58□□□□□ -2.16
UPF3B-203ENST00000478840 COL1A1P02452 1464 aaPredicted RBP1.57□□□□□ -2.16
UPF3B-203ENST00000478840 KIAA1549LQ6ZVL6 1849 aa1.57□□□□□ -2.16
UPF3B-203ENST00000478840 A0A0J9YY99 117 aa1.57□□□□□ -2.16
UPF3B-203ENST00000478840 OR2H2O95918 312 aa1.57□□□□□ -2.16
UPF3B-203ENST00000478840 PPYP01298 95 aa1.57□□□□□ -2.16
UPF3B-203ENST00000478840 TCRAP04437 139 aa1.57□□□□□ -2.16
UPF3B-203ENST00000478840 PAEPP09466 180 aa1.57□□□□□ -2.16
UPF3B-203ENST00000478840 PSPHP78330 225 aa1.57□□□□□ -2.16
UPF3B-203ENST00000478840 LINC00299Q6ZSB3 139 aa1.57□□□□□ -2.16
UPF3B-203ENST00000478840 MAGOHBQ96A72 148 aaKnown RBP1.57□□□□□ -2.16
UPF3B-203ENST00000478840 PHRF1Q9P1Y6 1649 aaKnown RBP1.57□□□□□ -2.16
UPF3B-203ENST00000478840 OTOGLQ3ZCN5 2332 aa1.57□□□□□ -2.16
UPF3B-203ENST00000478840 E9PCH4 1651 aa1.57□□□□□ -2.16
UPF3B-203ENST00000478840 C3orf85A0A1B0GTC6 90 aa1.56□□□□□ -2.16
UPF3B-203ENST00000478840 CMPK1P30085 196 aa1.56□□□□□ -2.16
UPF3B-203ENST00000478840 TMEM244Q5VVB8 128 aa1.56□□□□□ -2.16
UPF3B-203ENST00000478840 OR4S1Q8NGB4 309 aa1.56□□□□□ -2.16
UPF3B-203ENST00000478840 GSKIPQ9P0R6 139 aa1.56□□□□□ -2.16
UPF3B-203ENST00000478840 MT-ND4LP03901 98 aa1.55□□□□□ -2.16
UPF3B-203ENST00000478840 ETV6P41212 452 aa1.55□□□□□ -2.16
UPF3B-203ENST00000478840 DEFB115Q30KQ5 88 aa1.55□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms