RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 PITX3O75364 302 aa5.12□□□□□ -1.59
USP54-211ENST00000474929 LEPP41159 167 aa5.12□□□□□ -1.59
USP54-211ENST00000474929 KLF9Q13886 244 aaPredicted RBP5.12□□□□□ -1.59
USP54-211ENST00000474929 SPANXN2Q5MJ10 180 aa5.12□□□□□ -1.59
USP54-211ENST00000474929 SELENOHQ8IZQ5 122 aaKnown RBP5.12□□□□□ -1.59
USP54-211ENST00000474929 NHLRC2Q8NBF2 726 aa5.12□□□□□ -1.59
USP54-211ENST00000474929 C11orf72Q8NBR9 251 aa5.12□□□□□ -1.59
USP54-211ENST00000474929 GLYATL2Q8WU03 294 aa5.12□□□□□ -1.59
USP54-211ENST00000474929 ODF3Q96PU9 254 aa5.12□□□□□ -1.59
USP54-211ENST00000474929 SLC25A32Q9H2D1 315 aa5.12□□□□□ -1.59
USP54-211ENST00000474929 NAA60Q9H7X0 242 aa5.12□□□□□ -1.59
USP54-211ENST00000474929 SLC25A22Q9H936 323 aa5.12□□□□□ -1.59
USP54-211ENST00000474929 CACFD1Q9UGQ2 172 aa5.12□□□□□ -1.59
USP54-211ENST00000474929 KCNIP3Q9Y2W7 256 aa5.12□□□□□ -1.59
USP54-211ENST00000474929 KIF25-AS1Q9Y6Z4 181 aa5.12□□□□□ -1.59
USP54-211ENST00000474929 V9GYH0 126 aa5.12□□□□□ -1.59
USP54-211ENST00000474929 A0A0G2JRQ6 117 aa5.11□□□□□ -1.59
USP54-211ENST00000474929 CRYM-AS1A6NIL9 109 aa5.11□□□□□ -1.59
USP54-211ENST00000474929 CCSO14618 274 aa5.11□□□□□ -1.59
USP54-211ENST00000474929 CDS2O95674 445 aa5.11□□□□□ -1.59
USP54-211ENST00000474929 PFN1P07737 140 aaKnown RBP5.11□□□□□ -1.59
USP54-211ENST00000474929 FAUP35544 74 aaKnown RBP5.11□□□□□ -1.59
USP54-211ENST00000474929 INPP1P49441 399 aa5.11□□□□□ -1.59
USP54-211ENST00000474929 AP3S2P59780 193 aa5.11□□□□□ -1.59
USP54-211ENST00000474929 SURF2Q15527 256 aaPredicted RBP5.11□□□□□ -1.59
USP54-211ENST00000474929 BAK1Q16611 211 aa5.11□□□□□ -1.59
USP54-211ENST00000474929 TMEM268Q5VZI3 342 aa5.11□□□□□ -1.59
USP54-211ENST00000474929 DGAT2L7PQ6IED9 249 aa5.11□□□□□ -1.59
USP54-211ENST00000474929 S100A7AQ86SG5 101 aa5.11□□□□□ -1.59
USP54-211ENST00000474929 EIF4E3Q8N5X7 224 aaKnown RBP5.11□□□□□ -1.59
USP54-211ENST00000474929 RNF182Q8N6D2 247 aa5.11□□□□□ -1.59
USP54-211ENST00000474929 BPIFCQ8NFQ6 507 aa5.11□□□□□ -1.59
USP54-211ENST00000474929 LHFPL5Q8TAF8 219 aa5.11□□□□□ -1.59
USP54-211ENST00000474929 SCGB3A2Q96PL1 93 aa5.11□□□□□ -1.59
USP54-211ENST00000474929 SRRQ9GZT4 340 aa5.11□□□□□ -1.59
USP54-211ENST00000474929 TMEM222Q9H0R3 208 aa5.11□□□□□ -1.59
USP54-211ENST00000474929 OR51M1Q9H341 326 aa5.11□□□□□ -1.59
USP54-211ENST00000474929 RNF24Q9Y225 148 aa5.11□□□□□ -1.59
USP54-211ENST00000474929 TRAV8-2A0A0B4J237 113 aa5.1□□□□□ -1.59
USP54-211ENST00000474929 NXPH3O95157 252 aa5.1□□□□□ -1.59
USP54-211ENST00000474929 RPL7P18124 248 aaKnown RBP5.1□□□□□ -1.59
USP54-211ENST00000474929 CXCL2P19875 107 aa5.1□□□□□ -1.59
USP54-211ENST00000474929 CCR6P51684 374 aa5.1□□□□□ -1.59
USP54-211ENST00000474929 SPCS3P61009 180 aa5.1□□□□□ -1.59
USP54-211ENST00000474929 RPL19P84098 196 aaKnown RBP5.1□□□□□ -1.59
USP54-211ENST00000474929 FGL1Q08830 312 aa5.1□□□□□ -1.59
USP54-211ENST00000474929 CIRBPQ14011 172 aaKnown RBP5.1□□□□□ -1.59
USP54-211ENST00000474929 TRIQKQ629K1 86 aa5.1□□□□□ -1.59
USP54-211ENST00000474929 FAM219AQ8IW50 185 aa5.1□□□□□ -1.59
USP54-211ENST00000474929 ZNF664Q8N3J9 261 aa5.1□□□□□ -1.59
USP54-211ENST00000474929 OR10G4Q8NGN3 311 aa5.1□□□□□ -1.59
USP54-211ENST00000474929 LRRC20Q8TCA0 184 aa5.1□□□□□ -1.59
USP54-211ENST00000474929 TRIM63Q969Q1 353 aa5.1□□□□□ -1.59
USP54-211ENST00000474929 C2orf50Q96LR7 162 aa5.1□□□□□ -1.59
USP54-211ENST00000474929 KRTAP9-9Q9BYP9 154 aa5.1□□□□□ -1.59
USP54-211ENST00000474929 KRTAP9-4Q9BYQ2 154 aa5.1□□□□□ -1.59
USP54-211ENST00000474929 HEYLQ9NQ87 328 aaPredicted RBP5.1□□□□□ -1.59
USP54-211ENST00000474929 CTNNBIP1Q9NSA3 81 aaPredicted RBP5.1□□□□□ -1.59
USP54-211ENST00000474929 IGKV2D-24A0A075B6R9 120 aa5.09□□□□□ -1.59
USP54-211ENST00000474929 PHOX2AO14813 284 aa5.09□□□□□ -1.59
USP54-211ENST00000474929 B3GALNT1O75752 331 aa5.09□□□□□ -1.59
USP54-211ENST00000474929 CXCL3P19876 107 aa5.09□□□□□ -1.59
USP54-211ENST00000474929 PRR3P79522 188 aaKnown RBP5.09□□□□□ -1.59
USP54-211ENST00000474929 PRR4Q16378 134 aa5.09□□□□□ -1.59
USP54-211ENST00000474929 GUK1Q16774 197 aa5.09□□□□□ -1.59
USP54-211ENST00000474929 GGNBP1Q5YKI7 109 aa5.09□□□□□ -1.59
USP54-211ENST00000474929 LYZL2Q7Z4W2 148 aa5.09□□□□□ -1.59
USP54-211ENST00000474929 C9orf163Q8N9P6 203 aa5.09□□□□□ -1.59
USP54-211ENST00000474929 OR10G9Q8NGN4 311 aa5.09□□□□□ -1.59
USP54-211ENST00000474929 RPUSD4Q96CM3 377 aaKnown RBP5.09□□□□□ -1.59
USP54-211ENST00000474929 SLC35E1Q96K37 410 aa5.09□□□□□ -1.59
USP54-211ENST00000474929 SDHCQ99643 169 aaPredicted RBP5.09□□□□□ -1.59
USP54-211ENST00000474929 ARPC5LQ9BPX5 153 aa5.09□□□□□ -1.59
USP54-211ENST00000474929 MRPL16Q9NX20 251 aaKnown RBP5.09□□□□□ -1.59
USP54-211ENST00000474929 PSORS1C2Q9UIG4 136 aa5.09□□□□□ -1.59
USP54-211ENST00000474929 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.09□□□□□ -1.59
USP54-211ENST00000474929 A0A087X0K7 114 aa5.08□□□□□ -1.6
USP54-211ENST00000474929 TRAV12-3A0A0B4J271 114 aa5.08□□□□□ -1.6
USP54-211ENST00000474929 CEBPZOSA8MTT3 80 aa5.08□□□□□ -1.6
USP54-211ENST00000474929 SLC25A5P05141 298 aaKnown RBP5.08□□□□□ -1.6
USP54-211ENST00000474929 ANXA3P12429 323 aa5.08□□□□□ -1.6
USP54-211ENST00000474929 S100A1P23297 94 aa5.08□□□□□ -1.6
USP54-211ENST00000474929 LINC01547P58512 204 aaPredicted RBP5.08□□□□□ -1.6
USP54-211ENST00000474929 LGI3Q8N145 548 aa5.08□□□□□ -1.6
USP54-211ENST00000474929 SLC25A21Q9BQT8 299 aaPredicted RBP5.08□□□□□ -1.6
USP54-211ENST00000474929 TMEM147Q9BVK8 224 aa5.08□□□□□ -1.6
USP54-211ENST00000474929 FLVCR2Q9UPI3 526 aa5.08□□□□□ -1.6
USP54-211ENST00000474929 hCG_2014768A0A024R1R8 64 aa5.07□□□□□ -1.6
USP54-211ENST00000474929 IGKV1OR2-108A0A075B7D4 117 aa5.07□□□□□ -1.6
USP54-211ENST00000474929 A0A0B4J2A0 478 aa5.07□□□□□ -1.6
USP54-211ENST00000474929 C7orf71A4D174 169 aa5.07□□□□□ -1.6
USP54-211ENST00000474929 CENPXA8MT69 81 aa5.07□□□□□ -1.6
USP54-211ENST00000474929 RGS13O14921 159 aa5.07□□□□□ -1.6
USP54-211ENST00000474929 HOXB5P09067 269 aa5.07□□□□□ -1.6
USP54-211ENST00000474929 SULT1A3P0DMM9 295 aa5.07□□□□□ -1.6
USP54-211ENST00000474929 SULT1A4P0DMN0 295 aa5.07□□□□□ -1.6
USP54-211ENST00000474929 IL7P13232 177 aa5.07□□□□□ -1.6
USP54-211ENST00000474929 PPP1R1AQ13522 171 aa5.07□□□□□ -1.6
USP54-211ENST00000474929 VWC2Q2TAL6 325 aa5.07□□□□□ -1.6
USP54-211ENST00000474929 AARDQ4LEZ3 155 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms