RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 SIGLEC15Q6ZMC9 328 aa10.68□□□□□ -0.7
CCDC88A-211ENST00000471947 C18orf32Q8TCD1 76 aa10.68□□□□□ -0.7
CCDC88A-211ENST00000471947 GNB1LQ9BYB4 327 aa10.68□□□□□ -0.7
CCDC88A-211ENST00000471947 F5H697 171 aa10.68□□□□□ -0.7
CCDC88A-211ENST00000471947 CTAG1AP78358 180 aa10.68□□□□□ -0.7
CCDC88A-211ENST00000471947 PSG3Q16557 428 aa10.68□□□□□ -0.7
CCDC88A-211ENST00000471947 MRPL27Q9P0M9 148 aaKnown RBP10.68□□□□□ -0.7
CCDC88A-211ENST00000471947 MT-ND6P03923 174 aa10.68□□□□□ -0.7
CCDC88A-211ENST00000471947 IGF1P05019 195 aa10.68□□□□□ -0.7
CCDC88A-211ENST00000471947 RIGQ13278 110 aa10.68□□□□□ -0.7
CCDC88A-211ENST00000471947 TP53TG3Q9ULZ0 132 aa10.68□□□□□ -0.7
CCDC88A-211ENST00000471947 ZNF324O75467 553 aaPredicted RBP10.67□□□□□ -0.7
CCDC88A-211ENST00000471947 C3orf79P0CE67 100 aa10.67□□□□□ -0.7
CCDC88A-211ENST00000471947 RNASE4P34096 147 aaKnown RBP10.67□□□□□ -0.7
CCDC88A-211ENST00000471947 HINT1P49773 126 aaPredicted RBP10.67□□□□□ -0.7
CCDC88A-211ENST00000471947 CYB5R2Q6BCY4 276 aa10.67□□□□□ -0.7
CCDC88A-211ENST00000471947 RNF5Q99942 180 aa10.67□□□□□ -0.7
CCDC88A-211ENST00000471947 IGHV3OR16-12A0A075B7B8 117 aa10.67□□□□□ -0.7
CCDC88A-211ENST00000471947 LEPROTL1O95214 131 aa10.67□□□□□ -0.7
CCDC88A-211ENST00000471947 GATA1P15976 413 aaPredicted RBP10.67□□□□□ -0.7
CCDC88A-211ENST00000471947 FAM74A4Q5TZK3 123 aa10.67□□□□□ -0.7
CCDC88A-211ENST00000471947 D6R8Y8 96 aa10.67□□□□□ -0.7
CCDC88A-211ENST00000471947 TYMSP04818 313 aa10.67□□□□□ -0.7
CCDC88A-211ENST00000471947 C10orf105Q8TEF2 133 aa10.67□□□□□ -0.7
CCDC88A-211ENST00000471947 POLR3KQ9Y2Y1 108 aaPredicted RBP10.67□□□□□ -0.7
CCDC88A-211ENST00000471947 TRAV26-2A0A0B4J265 109 aa10.66□□□□□ -0.7
CCDC88A-211ENST00000471947 B4DSR2 109 aa10.66□□□□□ -0.7
CCDC88A-211ENST00000471947 KIR3DS1Q14943 382 aa10.66□□□□□ -0.7
CCDC88A-211ENST00000471947 FAM181BA6NEQ2 426 aa10.66□□□□□ -0.7
CCDC88A-211ENST00000471947 H3BVH4 76 aa10.66□□□□□ -0.7
CCDC88A-211ENST00000471947 NDUFA3O95167 84 aa10.66□□□□□ -0.7
CCDC88A-211ENST00000471947 GPX1P07203 203 aa10.66□□□□□ -0.7
CCDC88A-211ENST00000471947 C1orf122Q6ZSJ8 110 aa10.66□□□□□ -0.7
CCDC88A-211ENST00000471947 NPBQ8NG41 125 aa10.66□□□□□ -0.7
CCDC88A-211ENST00000471947 Q96MF0 132 aa10.66□□□□□ -0.7
CCDC88A-211ENST00000471947 EGR2P11161 476 aaPredicted RBP10.66□□□□□ -0.7
CCDC88A-211ENST00000471947 FOXE3Q13461 319 aa10.66□□□□□ -0.7
CCDC88A-211ENST00000471947 LINC00477Q96M19 166 aa10.66□□□□□ -0.7
CCDC88A-211ENST00000471947 ZNF80P51504 273 aaPredicted RBP10.65□□□□□ -0.7
CCDC88A-211ENST00000471947 SYNJ2BPP57105 145 aa10.65□□□□□ -0.7
CCDC88A-211ENST00000471947 SRSF2Q01130 221 aaKnown RBP10.65□□□□□ -0.7
CCDC88A-211ENST00000471947 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.65□□□□□ -0.7
CCDC88A-211ENST00000471947 CCDC140Q96MF4 163 aa10.65□□□□□ -0.7
CCDC88A-211ENST00000471947 hDV102S1A0JD36 115 aa10.65□□□□□ -0.7
CCDC88A-211ENST00000471947 BTF3P20290 206 aaKnown RBP10.65□□□□□ -0.7
CCDC88A-211ENST00000471947 ATRQ13535 2644 aa10.65□□□□□ -0.7
CCDC88A-211ENST00000471947 TTC9CQ8N5M4 171 aa10.65□□□□□ -0.7
CCDC88A-211ENST00000471947 SMIM27A0A1W2PRY6 76 aa10.65□□□□□ -0.71
CCDC88A-211ENST00000471947 EREGO14944 169 aa10.65□□□□□ -0.71
CCDC88A-211ENST00000471947 HNRNPA3P51991 378 aaKnown RBP10.65□□□□□ -0.71
CCDC88A-211ENST00000471947 YPEL3P61236 119 aaPredicted RBP10.65□□□□□ -0.71
CCDC88A-211ENST00000471947 TMEM249Q2WGJ8 235 aa10.65□□□□□ -0.71
CCDC88A-211ENST00000471947 FER1L6-AS1Q8NA97 138 aa10.65□□□□□ -0.71
CCDC88A-211ENST00000471947 HSBP1L1C9JCN9 74 aa10.64□□□□□ -0.71
CCDC88A-211ENST00000471947 Q5PR19 223 aa10.64□□□□□ -0.71
CCDC88A-211ENST00000471947 FAM162BQ5T6X4 162 aa10.64□□□□□ -0.71
CCDC88A-211ENST00000471947 C5orf56Q8N8D9 126 aa10.64□□□□□ -0.71
CCDC88A-211ENST00000471947 FAM110DQ8TAY7 271 aaPredicted RBP10.64□□□□□ -0.71
CCDC88A-211ENST00000471947 PSG9Q00887 426 aa10.64□□□□□ -0.71
CCDC88A-211ENST00000471947 TRAV12-2A0A075B6T6 113 aa10.63□□□□□ -0.71
CCDC88A-211ENST00000471947 Q6ZVH6 145 aa10.63□□□□□ -0.71
CCDC88A-211ENST00000471947 RHPN1-AS1Q9BWJ2 59 aa10.63□□□□□ -0.71
CCDC88A-211ENST00000471947 IFI27P40305 119 aaPredicted RBP10.63□□□□□ -0.71
CCDC88A-211ENST00000471947 PAFAH1B2P68402 229 aa10.63□□□□□ -0.71
CCDC88A-211ENST00000471947 RNF24Q9Y225 148 aa10.63□□□□□ -0.71
CCDC88A-211ENST00000471947 PRSS1P07477 247 aa10.63□□□□□ -0.71
CCDC88A-211ENST00000471947 C8orf86Q6ZUL3 223 aa10.63□□□□□ -0.71
CCDC88A-211ENST00000471947 SMIM15Q7Z3B0 74 aa10.63□□□□□ -0.71
CCDC88A-211ENST00000471947 PRELID3AQ96N28 172 aa10.63□□□□□ -0.71
CCDC88A-211ENST00000471947 LTAP01374 205 aa10.62□□□□□ -0.71
CCDC88A-211ENST00000471947 CRIP1P50238 77 aa10.62□□□□□ -0.71
CCDC88A-211ENST00000471947 FAM106AQ4KMX7 169 aa10.62□□□□□ -0.71
CCDC88A-211ENST00000471947 DPF1Q92782 380 aa10.62□□□□□ -0.71
CCDC88A-211ENST00000471947 PRR25Q96S07 402 aa10.62□□□□□ -0.71
CCDC88A-211ENST00000471947 NPFFR1Q9GZQ6 430 aa10.62□□□□□ -0.71
CCDC88A-211ENST00000471947 AP5S1Q9NUS5 200 aa10.62□□□□□ -0.71
CCDC88A-211ENST00000471947 F8W735 103 aaPredicted RBP10.62□□□□□ -0.71
CCDC88A-211ENST00000471947 PSMG4Q5JS54 123 aa10.62□□□□□ -0.71
CCDC88A-211ENST00000471947 ZNF502Q8TBZ5 544 aa10.62□□□□□ -0.71
CCDC88A-211ENST00000471947 RPLP1P05386 114 aaKnown RBP10.61□□□□□ -0.71
CCDC88A-211ENST00000471947 IGLC2P0DOY2 106 aa10.61□□□□□ -0.71
CCDC88A-211ENST00000471947 LINC00310P59036 64 aa10.61□□□□□ -0.71
CCDC88A-211ENST00000471947 AGPAT4-IT1Q9H0P7 198 aa10.61□□□□□ -0.71
CCDC88A-211ENST00000471947 MXRA5Q9NR99 2828 aa10.61□□□□□ -0.71
CCDC88A-211ENST00000471947 HOXA3O43365 443 aaPredicted RBP10.61□□□□□ -0.71
CCDC88A-211ENST00000471947 FSTL3O95633 263 aa10.61□□□□□ -0.71
CCDC88A-211ENST00000471947 OR10J6PQ8NGY7 276 aa10.61□□□□□ -0.71
CCDC88A-211ENST00000471947 ALKBH7Q9BT30 221 aaPredicted RBP10.61□□□□□ -0.71
CCDC88A-211ENST00000471947 SMAD5-AS1Q9Y6J3 95 aa10.61□□□□□ -0.71
CCDC88A-211ENST00000471947 LINC00614P0C842 121 aa10.61□□□□□ -0.71
CCDC88A-211ENST00000471947 LY96Q9Y6Y9 160 aa10.61□□□□□ -0.71
CCDC88A-211ENST00000471947 PRSS57Q6UWY2 283 aa10.6□□□□□ -0.71
CCDC88A-211ENST00000471947 FABP5P3A8MUU1 101 aa10.6□□□□□ -0.71
CCDC88A-211ENST00000471947 OOSP1A8MZH6 123 aa10.6□□□□□ -0.71
CCDC88A-211ENST00000471947 OR4C46A6NHA9 309 aa10.6□□□□□ -0.71
CCDC88A-211ENST00000471947 BUB3O43684 328 aa10.6□□□□□ -0.71
CCDC88A-211ENST00000471947 NEGR1Q7Z3B1 354 aa10.6□□□□□ -0.71
CCDC88A-211ENST00000471947 OR10AG1Q8NH19 301 aa10.6□□□□□ -0.71
CCDC88A-211ENST00000471947 ZFP30Q9Y2G7 519 aa10.6□□□□□ -0.71
CCDC88A-211ENST00000471947 TRBV9A0A0B4J1U6 114 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms