RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 Q8TAT8 98 aa8.39□□□□□ -1.07
CUX1-207ENST00000465461 C11orf45Q8TAV5 145 aa8.39□□□□□ -1.07
CUX1-207ENST00000465461 C11orf68Q9H3H3 251 aaKnown RBP8.39□□□□□ -1.07
CUX1-207ENST00000465461 OTORQ9NRC9 128 aa8.39□□□□□ -1.07
CUX1-207ENST00000465461 TRAV12-3A0A0B4J271 114 aa8.38□□□□□ -1.07
CUX1-207ENST00000465461 CTXND1A0A1B0GTU2 59 aa8.38□□□□□ -1.07
CUX1-207ENST00000465461 CXorf65A6NEN9 183 aa8.38□□□□□ -1.07
CUX1-207ENST00000465461 DIRC3C9JPN6 131 aa8.38□□□□□ -1.07
CUX1-207ENST00000465461 CXorf1O96002 111 aa8.38□□□□□ -1.07
CUX1-207ENST00000465461 AZU1P20160 251 aa8.38□□□□□ -1.07
CUX1-207ENST00000465461 CSN1S1P47710 185 aa8.38□□□□□ -1.07
CUX1-207ENST00000465461 Q6ZQT7 251 aa8.38□□□□□ -1.07
CUX1-207ENST00000465461 C9orf47Q6ZRZ4 202 aa8.38□□□□□ -1.07
CUX1-207ENST00000465461 LYPD1Q8N2G4 141 aa8.38□□□□□ -1.07
CUX1-207ENST00000465461 LINC01587Q99440 93 aa8.38□□□□□ -1.07
CUX1-207ENST00000465461 NEU1Q99519 415 aa8.38□□□□□ -1.07
CUX1-207ENST00000465461 LOC102723971A0A1B0GUV8 181 aa8.37□□□□□ -1.07
CUX1-207ENST00000465461 A0A1B0GV50 99 aa8.37□□□□□ -1.07
CUX1-207ENST00000465461 HBE1P02100 147 aa8.37□□□□□ -1.07
CUX1-207ENST00000465461 SEC11BP0C7V7 166 aa8.37□□□□□ -1.07
CUX1-207ENST00000465461 LEPP41159 167 aa8.37□□□□□ -1.07
CUX1-207ENST00000465461 UBE2G2P60604 165 aa8.37□□□□□ -1.07
CUX1-207ENST00000465461 BTN1A1Q13410 526 aa8.37□□□□□ -1.07
CUX1-207ENST00000465461 RRN3P1Q2M238 152 aa8.37□□□□□ -1.07
CUX1-207ENST00000465461 TMEM78Q5T7P6 136 aa8.37□□□□□ -1.07
CUX1-207ENST00000465461 PRR9Q5T870 116 aa8.37□□□□□ -1.07
CUX1-207ENST00000465461 CMTM2Q8TAZ6 248 aa8.37□□□□□ -1.07
CUX1-207ENST00000465461 SUN5Q8TC36 379 aa8.37□□□□□ -1.07
CUX1-207ENST00000465461 TMED6Q8WW62 240 aa8.37□□□□□ -1.07
CUX1-207ENST00000465461 FAM19A4Q96LR4 140 aa8.37□□□□□ -1.07
CUX1-207ENST00000465461 SGK494Q96LW2 274 aa8.37□□□□□ -1.07
CUX1-207ENST00000465461 LINC00477Q96M19 166 aa8.37□□□□□ -1.07
CUX1-207ENST00000465461 ZNF492Q9P255 531 aa8.37□□□□□ -1.07
CUX1-207ENST00000465461 TRAV8-1A0A0A6YYK1 113 aa8.36□□□□□ -1.07
CUX1-207ENST00000465461 MAP1LC3B2A6NCE7 125 aa8.36□□□□□ -1.07
CUX1-207ENST00000465461 SMIM9A6NGZ8 99 aa8.36□□□□□ -1.07
CUX1-207ENST00000465461 SLC25A5P05141 298 aaKnown RBP8.36□□□□□ -1.07
CUX1-207ENST00000465461 TPT1P13693 172 aaKnown RBP8.36□□□□□ -1.07
CUX1-207ENST00000465461 TSPOP30536 169 aa8.36□□□□□ -1.07
CUX1-207ENST00000465461 RNASE4P34096 147 aaKnown RBP8.36□□□□□ -1.07
CUX1-207ENST00000465461 NKX2-5P52952 324 aaPredicted RBP8.36□□□□□ -1.07
CUX1-207ENST00000465461 SUMO1P63165 101 aaKnown RBP8.36□□□□□ -1.07
CUX1-207ENST00000465461 GOLT1AQ6ZVE7 132 aa8.36□□□□□ -1.07
CUX1-207ENST00000465461 FAM213BQ8TBF2 198 aa8.36□□□□□ -1.07
CUX1-207ENST00000465461 RXFP4Q8TDU9 374 aa8.36□□□□□ -1.07
CUX1-207ENST00000465461 MAP1LC3BQ9GZQ8 125 aa8.36□□□□□ -1.07
CUX1-207ENST00000465461 YTHDF2Q9Y5A9 579 aaKnown RBP8.36□□□□□ -1.07
CUX1-207ENST00000465461 GGTLC3B5MD39 225 aa8.35□□□□□ -1.07
CUX1-207ENST00000465461 ZNF138P52744 262 aa8.35□□□□□ -1.07
CUX1-207ENST00000465461 C12orf74Q32Q52 190 aa8.35□□□□□ -1.07
CUX1-207ENST00000465461 FAM74A1Q5RGS3 127 aa8.35□□□□□ -1.07
CUX1-207ENST00000465461 C9orf62Q8N4C0 152 aa8.35□□□□□ -1.07
CUX1-207ENST00000465461 ZFAND2AQ8N6M9 145 aa8.35□□□□□ -1.07
CUX1-207ENST00000465461 PHLDA1Q8WV24 401 aaPredicted RBP8.35□□□□□ -1.07
CUX1-207ENST00000465461 ODF3Q96PU9 254 aa8.35□□□□□ -1.07
CUX1-207ENST00000465461 TMEM167BQ9NRX6 74 aa8.35□□□□□ -1.07
CUX1-207ENST00000465461 C7orf71A4D174 169 aa8.34□□□□□ -1.07
CUX1-207ENST00000465461 RBAKDNA6NC62 111 aa8.34□□□□□ -1.07
CUX1-207ENST00000465461 KLLNB2CW77 178 aa8.34□□□□□ -1.07
CUX1-207ENST00000465461 GPX1P07203 203 aa8.34□□□□□ -1.07
CUX1-207ENST00000465461 TAS2R60P59551 318 aa8.34□□□□□ -1.07
CUX1-207ENST00000465461 EIF5AP63241 154 aaKnown RBP8.34□□□□□ -1.07
CUX1-207ENST00000465461 ZFP69Q49AA0 526 aa8.34□□□□□ -1.07
CUX1-207ENST00000465461 FAM222AQ5U5X8 452 aa8.34□□□□□ -1.07
CUX1-207ENST00000465461 Q6ZTC4 211 aa8.34□□□□□ -1.07
CUX1-207ENST00000465461 STOML3Q8TAV4 291 aa8.34□□□□□ -1.07
CUX1-207ENST00000465461 PLAC8L1A1L4L8 177 aa8.33□□□□□ -1.08
CUX1-207ENST00000465461 H7BYZ3 331 aa8.33□□□□□ -1.08
CUX1-207ENST00000465461 ZNF324O75467 553 aaPredicted RBP8.33□□□□□ -1.08
CUX1-207ENST00000465461 TCRAP04437 139 aa8.33□□□□□ -1.08
CUX1-207ENST00000465461 CRISP2P16562 243 aa8.33□□□□□ -1.08
CUX1-207ENST00000465461 CEMP1Q6PRD7 247 aaPredicted RBP8.33□□□□□ -1.08
CUX1-207ENST00000465461 TMEM256Q8N2U0 113 aa8.33□□□□□ -1.08
CUX1-207ENST00000465461 SFT2D1Q8WV19 159 aa8.33□□□□□ -1.08
CUX1-207ENST00000465461 TVP23CQ96ET8 276 aa8.33□□□□□ -1.08
CUX1-207ENST00000465461 LINC00479Q96M42 142 aa8.33□□□□□ -1.08
CUX1-207ENST00000465461 DKK2Q9UBU2 259 aa8.33□□□□□ -1.08
CUX1-207ENST00000465461 EPDR1Q9UM22 224 aa8.33□□□□□ -1.08
CUX1-207ENST00000465461 TRAV34A0A0B4J273 112 aa8.32□□□□□ -1.08
CUX1-207ENST00000465461 TMEM189A5PLL7 270 aa8.32□□□□□ -1.08
CUX1-207ENST00000465461 FAM74A7A6NL05 159 aa8.32□□□□□ -1.08
CUX1-207ENST00000465461 UMAD1C9J7I0 102 aa8.32□□□□□ -1.08
CUX1-207ENST00000465461 F6UZH7 168 aa8.32□□□□□ -1.08
CUX1-207ENST00000465461 SPART-AS1P0CW21 52 aa8.32□□□□□ -1.08
CUX1-207ENST00000465461 C5orf17Q8NAS9 161 aa8.32□□□□□ -1.08
CUX1-207ENST00000465461 MBD3L1Q8WWY6 194 aa8.32□□□□□ -1.08
CUX1-207ENST00000465461 C20orf144Q9BQM9 153 aa8.32□□□□□ -1.08
CUX1-207ENST00000465461 NIPSNAP3BQ9BS92 247 aa8.32□□□□□ -1.08
CUX1-207ENST00000465461 TP53TG3Q9ULZ0 132 aa8.32□□□□□ -1.08
CUX1-207ENST00000465461 A0A1W2PRE2 83 aa8.31□□□□□ -1.08
CUX1-207ENST00000465461 NUPR2A6NF83 97 aa8.31□□□□□ -1.08
CUX1-207ENST00000465461 IFNA7P01567 189 aa8.31□□□□□ -1.08
CUX1-207ENST00000465461 ATP5G3P48201 142 aa8.31□□□□□ -1.08
CUX1-207ENST00000465461 CCL20P78556 96 aa8.31□□□□□ -1.08
CUX1-207ENST00000465461 MUC21Q5SSG8 566 aa8.31□□□□□ -1.08
CUX1-207ENST00000465461 SLC51BQ86UW2 128 aa8.31□□□□□ -1.08
CUX1-207ENST00000465461 RNASE8Q8TDE3 154 aaKnown RBP8.31□□□□□ -1.08
CUX1-207ENST00000465461 C8orf49Q96NF6 230 aa8.31□□□□□ -1.08
CUX1-207ENST00000465461 STARD9Q9P2P6 4700 aa8.3□□□□□ -1.08
CUX1-207ENST00000465461 CBY3A6NI87 242 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms