RNA–Protein interactions for RNA: ENST00000465132.1

CPSF4-209, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 927 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-209ENST00000465132 A0A1B0GV50 99 aa12.82□□□□□ -0.36
CPSF4-209ENST00000465132 FAM74A7A6NL05 159 aa12.82□□□□□ -0.36
CPSF4-209ENST00000465132 KNCNA6PVL3 124 aa12.82□□□□□ -0.36
CPSF4-209ENST00000465132 UBE2G2P60604 165 aa12.82□□□□□ -0.36
CPSF4-209ENST00000465132 TRPT1Q86TN4 253 aaKnown RBP12.82□□□□□ -0.36
CPSF4-209ENST00000465132 CSTL1Q9H114 145 aa12.82□□□□□ -0.36
CPSF4-209ENST00000465132 GNG13Q9P2W3 67 aa12.82□□□□□ -0.36
CPSF4-209ENST00000465132 ZNF705FA8MVS1 300 aaPredicted RBP12.81□□□□□ -0.36
CPSF4-209ENST00000465132 HLA-DMBP28068 263 aa12.81□□□□□ -0.36
CPSF4-209ENST00000465132 CNN1P51911 297 aaKnown RBP12.81□□□□□ -0.36
CPSF4-209ENST00000465132 ODF3Q96PU9 254 aa12.81□□□□□ -0.36
CPSF4-209ENST00000465132 ATG101Q9BSB4 218 aa12.81□□□□□ -0.36
CPSF4-209ENST00000465132 EPDR1Q9UM22 224 aa12.81□□□□□ -0.36
CPSF4-209ENST00000465132 TRBV7-9A0A0J9YWB2 115 aa12.8□□□□□ -0.36
CPSF4-209ENST00000465132 DIRC3C9JPN6 131 aa12.8□□□□□ -0.36
CPSF4-209ENST00000465132 NPIPB6E9PJ23 425 aa12.8□□□□□ -0.36
CPSF4-209ENST00000465132 M0R3E3 92 aa12.8□□□□□ -0.36
CPSF4-209ENST00000465132 PAGE4O60829 102 aa12.8□□□□□ -0.36
CPSF4-209ENST00000465132 S100A9P06702 114 aaKnown RBP12.8□□□□□ -0.36
CPSF4-209ENST00000465132 LENEPQ9Y5L5 61 aa12.8□□□□□ -0.36
CPSF4-209ENST00000465132 C11orf94C9JXX5 98 aa12.79□□□□□ -0.36
CPSF4-209ENST00000465132 TCRAP04437 139 aa12.79□□□□□ -0.36
CPSF4-209ENST00000465132 RPL35AP18077 110 aaKnown RBP12.79□□□□□ -0.36
CPSF4-209ENST00000465132 LEPP41159 167 aa12.79□□□□□ -0.36
CPSF4-209ENST00000465132 ZNF124Q15973 351 aa12.79□□□□□ -0.36
CPSF4-209ENST00000465132 C9orf47Q6ZRZ4 202 aa12.79□□□□□ -0.36
CPSF4-209ENST00000465132 CYB561D1Q8N8Q1 229 aa12.79□□□□□ -0.36
CPSF4-209ENST00000465132 LYPD6BQ8NI32 183 aa12.79□□□□□ -0.36
CPSF4-209ENST00000465132 NDFIP1Q9BT67 221 aa12.79□□□□□ -0.36
CPSF4-209ENST00000465132 VAX2Q9UIW0 290 aa12.79□□□□□ -0.36
CPSF4-209ENST00000465132 PLECQ15149 4684 aaKnown RBP12.79□□□□□ -0.36
CPSF4-209ENST00000465132 A8MTW9 85 aa12.78□□□□□ -0.36
CPSF4-209ENST00000465132 GGTLC3B5MD39 225 aa12.78□□□□□ -0.36
CPSF4-209ENST00000465132 F6UB75 175 aa12.78□□□□□ -0.36
CPSF4-209ENST00000465132 PDE6DO43924 150 aa12.78□□□□□ -0.36
CPSF4-209ENST00000465132 NMBP08949 121 aa12.78□□□□□ -0.36
CPSF4-209ENST00000465132 RPH3ALQ9UNE2 315 aa12.78□□□□□ -0.36
CPSF4-209ENST00000465132 YTHDF2Q9Y5A9 579 aaKnown RBP12.78□□□□□ -0.36
CPSF4-209ENST00000465132 ALMS1Q8TCU4 4167 aa12.77□□□□□ -0.36
CPSF4-209ENST00000465132 CA1P00915 261 aaPredicted RBP12.77□□□□□ -0.37
CPSF4-209ENST00000465132 BCL2P10415 239 aa12.77□□□□□ -0.37
CPSF4-209ENST00000465132 ZNF138P52744 262 aa12.77□□□□□ -0.37
CPSF4-209ENST00000465132 MEF2BQ02080 365 aaPredicted RBP12.77□□□□□ -0.37
CPSF4-209ENST00000465132 GDF5OSQ5U4N7 250 aa12.77□□□□□ -0.37
CPSF4-209ENST00000465132 GOLT1AQ6ZVE7 132 aa12.77□□□□□ -0.37
CPSF4-209ENST00000465132 Q6ZWC4 215 aa12.77□□□□□ -0.37
CPSF4-209ENST00000465132 PRAC2D3DTV9 90 aa12.76□□□□□ -0.37
CPSF4-209ENST00000465132 PEX7O00628 323 aa12.76□□□□□ -0.37
CPSF4-209ENST00000465132 IGKV3-20P01619 116 aa12.76□□□□□ -0.37
CPSF4-209ENST00000465132 CDKN1BP46527 198 aa12.76□□□□□ -0.37
CPSF4-209ENST00000465132 UBE2G1P62253 170 aa12.76□□□□□ -0.37
CPSF4-209ENST00000465132 CCL20P78556 96 aa12.76□□□□□ -0.37
CPSF4-209ENST00000465132 SAPCD1Q5SSQ6 148 aa12.76□□□□□ -0.37
CPSF4-209ENST00000465132 TMEM75Q8N9X5 138 aa12.76□□□□□ -0.37
CPSF4-209ENST00000465132 RBFOX3A6NFN3 312 aa12.75□□□□□ -0.37
CPSF4-209ENST00000465132 AGRNO00468 2067 aa12.75□□□□□ -0.37
CPSF4-209ENST00000465132 NDUFS6O75380 124 aaKnown RBP12.75□□□□□ -0.37
CPSF4-209ENST00000465132 CCDC28AQ8IWP9 274 aa12.75□□□□□ -0.37
CPSF4-209ENST00000465132 FMC1Q96HJ9 113 aa12.75□□□□□ -0.37
CPSF4-209ENST00000465132 C20orf144Q9BQM9 153 aa12.75□□□□□ -0.37
CPSF4-209ENST00000465132 EIF5A2Q9GZV4 153 aaKnown RBP12.75□□□□□ -0.37
CPSF4-209ENST00000465132 TP53TG1Q9Y2A0 90 aa12.75□□□□□ -0.37
CPSF4-209ENST00000465132 IGKV2-40A0A087WW87 121 aaPredicted RBP12.74□□□□□ -0.37
CPSF4-209ENST00000465132 INSP01308 110 aa12.74□□□□□ -0.37
CPSF4-209ENST00000465132 IGKV2D-40P01614 121 aaPredicted RBP12.74□□□□□ -0.37
CPSF4-209ENST00000465132 ZNF705DP0CH99 300 aaPredicted RBP12.74□□□□□ -0.37
CPSF4-209ENST00000465132 ZNF705BP0CI00 300 aaPredicted RBP12.74□□□□□ -0.37
CPSF4-209ENST00000465132 AKR1C3P42330 323 aa12.74□□□□□ -0.37
CPSF4-209ENST00000465132 AGPAT4-IT1Q9H0P7 198 aa12.74□□□□□ -0.37
CPSF4-209ENST00000465132 SMDT1Q9H4I9 107 aa12.74□□□□□ -0.37
CPSF4-209ENST00000465132 ZNF492Q9P255 531 aa12.74□□□□□ -0.37
CPSF4-209ENST00000465132 ATP5G3P48201 142 aa12.73□□□□□ -0.37
CPSF4-209ENST00000465132 DEFB1P60022 68 aa12.73□□□□□ -0.37
CPSF4-209ENST00000465132 TMEM256Q8N2U0 113 aa12.73□□□□□ -0.37
CPSF4-209ENST00000465132 VGLL1Q99990 258 aa12.73□□□□□ -0.37
CPSF4-209ENST00000465132 OVOL2Q9BRP0 275 aa12.73□□□□□ -0.37
CPSF4-209ENST00000465132 GOLT1BQ9Y3E0 138 aa12.73□□□□□ -0.37
CPSF4-209ENST00000465132 GPX1P07203 203 aa12.72□□□□□ -0.37
CPSF4-209ENST00000465132 CT45A10P0DMU9 189 aa12.72□□□□□ -0.37
CPSF4-209ENST00000465132 GNG5P63218 68 aa12.72□□□□□ -0.37
CPSF4-209ENST00000465132 FLI1Q01543 452 aaPredicted RBP12.72□□□□□ -0.37
CPSF4-209ENST00000465132 ERCC8Q13216 396 aa12.72□□□□□ -0.37
CPSF4-209ENST00000465132 AMTNQ6UX39 209 aa12.72□□□□□ -0.37
CPSF4-209ENST00000465132 IGF2BP2-AS1Q96M15 143 aa12.72□□□□□ -0.37
CPSF4-209ENST00000465132 FAM210AQ96ND0 272 aa12.72□□□□□ -0.37
CPSF4-209ENST00000465132 ZFP30Q9Y2G7 519 aa12.72□□□□□ -0.37
CPSF4-209ENST00000465132 TRBV6-1A0A0K0K1D8 114 aa12.71□□□□□ -0.37
CPSF4-209ENST00000465132 LOC102723971A0A1B0GUV8 181 aa12.71□□□□□ -0.37
CPSF4-209ENST00000465132 TMEM250H0YL14 139 aa12.71□□□□□ -0.37
CPSF4-209ENST00000465132 CRISP2P16562 243 aa12.71□□□□□ -0.37
CPSF4-209ENST00000465132 PEA15Q15121 130 aa12.71□□□□□ -0.37
CPSF4-209ENST00000465132 SPINK13Q1W4C9 94 aa12.71□□□□□ -0.37
CPSF4-209ENST00000465132 ZNF506Q5JVG8 444 aa12.71□□□□□ -0.37
CPSF4-209ENST00000465132 CLLU1Q5K131 121 aa12.71□□□□□ -0.37
CPSF4-209ENST00000465132 LINC00476Q8WZB0 136 aa12.71□□□□□ -0.37
CPSF4-209ENST00000465132 TMEM208Q9BTX3 173 aa12.71□□□□□ -0.37
CPSF4-209ENST00000465132 SLC35B3Q9H1N7 401 aa12.71□□□□□ -0.37
CPSF4-209ENST00000465132 XCL2Q9UBD3 114 aa12.71□□□□□ -0.37
CPSF4-209ENST00000465132 PSG8Q9UQ74 426 aa12.71□□□□□ -0.37
CPSF4-209ENST00000465132 KLF12Q9Y4X4 402 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms