RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 TNFSF18Q9UNG2 199 aa13.33□□□□□ -0.28
USP39-209ENST00000458268 BORCS7-ASMTA0A0B4J1R7 106 aa13.32□□□□□ -0.28
USP39-209ENST00000458268 RNF222A6NCQ9 220 aa13.32□□□□□ -0.28
USP39-209ENST00000458268 ARPC5O15511 151 aa13.32□□□□□ -0.28
USP39-209ENST00000458268 RNASE4P34096 147 aaKnown RBP13.32□□□□□ -0.28
USP39-209ENST00000458268 CDC34P49427 236 aaPredicted RBP13.32□□□□□ -0.28
USP39-209ENST00000458268 BTN1A1Q13410 526 aa13.32□□□□□ -0.28
USP39-209ENST00000458268 CCDC28AQ8IWP9 274 aa13.32□□□□□ -0.28
USP39-209ENST00000458268 IQCF2Q8IXL9 164 aa13.32□□□□□ -0.28
USP39-209ENST00000458268 Q8TAT8 98 aa13.32□□□□□ -0.28
USP39-209ENST00000458268 APLNQ9ULZ1 77 aa13.32□□□□□ -0.28
USP39-209ENST00000458268 SACSQ9NZJ4 4579 aa13.31□□□□□ -0.28
USP39-209ENST00000458268 C16orf74Q96GX8 76 aa13.31□□□□□ -0.28
USP39-209ENST00000458268 LINC00477Q96M19 166 aa13.31□□□□□ -0.28
USP39-209ENST00000458268 PLECQ15149 4684 aaKnown RBP13.31□□□□□ -0.28
USP39-209ENST00000458268 C7orf71A4D174 169 aa13.3□□□□□ -0.28
USP39-209ENST00000458268 GPX1P07203 203 aa13.3□□□□□ -0.28
USP39-209ENST00000458268 ARL14EPLP0DKL9 152 aa13.3□□□□□ -0.28
USP39-209ENST00000458268 CMTM2Q8TAZ6 248 aa13.3□□□□□ -0.28
USP39-209ENST00000458268 ODF3Q96PU9 254 aa13.3□□□□□ -0.28
USP39-209ENST00000458268 NOP10Q9NPE3 64 aaKnown RBP13.3□□□□□ -0.28
USP39-209ENST00000458268 SLC25A5P05141 298 aaKnown RBP13.29□□□□□ -0.28
USP39-209ENST00000458268 CD300CQ08708 224 aa13.29□□□□□ -0.28
USP39-209ENST00000458268 PQLC2Q6ZP29 291 aa13.29□□□□□ -0.28
USP39-209ENST00000458268 C20orf144Q9BQM9 153 aa13.29□□□□□ -0.28
USP39-209ENST00000458268 PSMG3Q9BT73 122 aaPredicted RBP13.29□□□□□ -0.28
USP39-209ENST00000458268 NDUFAF3Q9BU61 184 aa13.29□□□□□ -0.28
USP39-209ENST00000458268 PGPA6NDG6 321 aa13.28□□□□□ -0.28
USP39-209ENST00000458268 LYRM9A8MSI8 78 aa13.28□□□□□ -0.28
USP39-209ENST00000458268 TCTAP57738 103 aa13.28□□□□□ -0.28
USP39-209ENST00000458268 LGALS9CQ6DKI2 356 aa13.28□□□□□ -0.28
USP39-209ENST00000458268 C9orf47Q6ZRZ4 202 aa13.28□□□□□ -0.28
USP39-209ENST00000458268 OR2G3Q8NGZ4 309 aa13.28□□□□□ -0.28
USP39-209ENST00000458268 TMEM263Q8WUH6 116 aaKnown RBP13.28□□□□□ -0.28
USP39-209ENST00000458268 TIMM8BQ9Y5J9 83 aaPredicted RBP13.28□□□□□ -0.28
USP39-209ENST00000458268 PLAC8L1A1L4L8 177 aa13.27□□□□□ -0.29
USP39-209ENST00000458268 SNURFLB1AK76 121 aa13.27□□□□□ -0.29
USP39-209ENST00000458268 G3V3Q6 166 aa13.27□□□□□ -0.29
USP39-209ENST00000458268 ZNF138P52744 262 aa13.27□□□□□ -0.29
USP39-209ENST00000458268 FAM74A1Q5RGS3 127 aa13.27□□□□□ -0.29
USP39-209ENST00000458268 PRR9Q5T870 116 aa13.27□□□□□ -0.29
USP39-209ENST00000458268 LYPD1Q8N2G4 141 aa13.27□□□□□ -0.29
USP39-209ENST00000458268 RAB24Q969Q5 203 aa13.27□□□□□ -0.29
USP39-209ENST00000458268 OTORQ9NRC9 128 aa13.27□□□□□ -0.29
USP39-209ENST00000458268 CBY3A6NI87 242 aa13.26□□□□□ -0.29
USP39-209ENST00000458268 F5H768 121 aa13.26□□□□□ -0.29
USP39-209ENST00000458268 MBP02144 154 aa13.26□□□□□ -0.29
USP39-209ENST00000458268 GNG5P63218 68 aa13.26□□□□□ -0.29
USP39-209ENST00000458268 ZNF493Q6ZR52 646 aa13.26□□□□□ -0.29
USP39-209ENST00000458268 RNASE8Q8TDE3 154 aaKnown RBP13.26□□□□□ -0.29
USP39-209ENST00000458268 GNPNAT1Q96EK6 184 aaPredicted RBP13.26□□□□□ -0.29
USP39-209ENST00000458268 ACTR3CQ9C0K3 210 aaPredicted RBP13.26□□□□□ -0.29
USP39-209ENST00000458268 ZNF492Q9P255 531 aa13.26□□□□□ -0.29
USP39-209ENST00000458268 DIRC3C9JPN6 131 aa13.25□□□□□ -0.29
USP39-209ENST00000458268 RGS13O14921 159 aa13.25□□□□□ -0.29
USP39-209ENST00000458268 SERF2P84101 59 aa13.25□□□□□ -0.29
USP39-209ENST00000458268 TMEM88Q6PEY1 159 aa13.25□□□□□ -0.29
USP39-209ENST00000458268 GOLT1AQ6ZVE7 132 aa13.25□□□□□ -0.29
USP39-209ENST00000458268 RXFP4Q8TDU9 374 aa13.25□□□□□ -0.29
USP39-209ENST00000458268 PYGO2Q9BRQ0 406 aa13.25□□□□□ -0.29
USP39-209ENST00000458268 HYDINQ4G0P3 5121 aa13.25□□□□□ -0.29
USP39-209ENST00000458268 GAGE12BA1L429 117 aa13.24□□□□□ -0.29
USP39-209ENST00000458268 KLLNB2CW77 178 aa13.24□□□□□ -0.29
USP39-209ENST00000458268 GAGE7O76087 117 aa13.24□□□□□ -0.29
USP39-209ENST00000458268 GAGE12FP0CL80 117 aa13.24□□□□□ -0.29
USP39-209ENST00000458268 GAGE12GP0CL81 117 aa13.24□□□□□ -0.29
USP39-209ENST00000458268 GAGE12IP0CL82 117 aa13.24□□□□□ -0.29
USP39-209ENST00000458268 STAG3L2P0CL84 134 aa13.24□□□□□ -0.29
USP39-209ENST00000458268 STAG3L3P0CL85 134 aa13.24□□□□□ -0.29
USP39-209ENST00000458268 GCHFRP30047 84 aa13.24□□□□□ -0.29
USP39-209ENST00000458268 AKR1C8PQ5T2L2 129 aa13.24□□□□□ -0.29
USP39-209ENST00000458268 Q6ZQT7 251 aa13.24□□□□□ -0.29
USP39-209ENST00000458268 SSX7Q7RTT5 188 aa13.24□□□□□ -0.29
USP39-209ENST00000458268 UBE2DNLQ8IWF7 75 aa13.24□□□□□ -0.29
USP39-209ENST00000458268 ZFAND2AQ8N6M9 145 aa13.24□□□□□ -0.29
USP39-209ENST00000458268 FAM19A4Q96LR4 140 aa13.24□□□□□ -0.29
USP39-209ENST00000458268 SGK494Q96LW2 274 aa13.23□□□□□ -0.29
USP39-209ENST00000458268 GSN-AS1Q9NRJ2 163 aa13.23□□□□□ -0.29
USP39-209ENST00000458268 RBAKDNA6NC62 111 aa13.22□□□□□ -0.29
USP39-209ENST00000458268 ATP5G1P05496 136 aa13.22□□□□□ -0.29
USP39-209ENST00000458268 CRISP2P16562 243 aa13.22□□□□□ -0.29
USP39-209ENST00000458268 ATP5G3P48201 142 aa13.22□□□□□ -0.29
USP39-209ENST00000458268 MUC21Q5SSG8 566 aa13.22□□□□□ -0.29
USP39-209ENST00000458268 EIF4E3Q8N5X7 224 aaKnown RBP13.22□□□□□ -0.29
USP39-209ENST00000458268 ARPC5LQ9BPX5 153 aa13.22□□□□□ -0.29
USP39-209ENST00000458268 TRAV8-1A0A0A6YYK1 113 aa13.21□□□□□ -0.29
USP39-209ENST00000458268 TAAR5O14804 337 aa13.21□□□□□ -0.29
USP39-209ENST00000458268 CXorf1O96002 111 aa13.21□□□□□ -0.29
USP39-209ENST00000458268 NAGKQ9UJ70 344 aa13.21□□□□□ -0.29
USP39-209ENST00000458268 TP53TG3Q9ULZ0 132 aa13.21□□□□□ -0.29
USP39-209ENST00000458268 DNAH1Q9P2D7 4330 aa13.21□□□□□ -0.29
USP39-209ENST00000458268 F6UZH7 168 aa13.2□□□□□ -0.3
USP39-209ENST00000458268 ZNF324O75467 553 aaPredicted RBP13.2□□□□□ -0.3
USP39-209ENST00000458268 FGF8P55075 233 aaPredicted RBP13.2□□□□□ -0.3
USP39-209ENST00000458268 UBE2G2P60604 165 aa13.2□□□□□ -0.3
USP39-209ENST00000458268 OR5I1Q13606 314 aa13.2□□□□□ -0.3
USP39-209ENST00000458268 IGHV1OR15-1A0A075B7D0 117 aa13.19□□□□□ -0.3
USP39-209ENST00000458268 TRGV1A0A0A0MS02 117 aa13.19□□□□□ -0.3
USP39-209ENST00000458268 CTXND1A0A1B0GTU2 59 aa13.19□□□□□ -0.3
USP39-209ENST00000458268 NUDT3O95989 172 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms