RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 CSN1S1P47710 185 aa6.46□□□□□ -1.37
SYNE1-214ENST00000454018 CAMPP49913 170 aa6.46□□□□□ -1.37
SYNE1-214ENST00000454018 BLOC1S1P78537 153 aa6.46□□□□□ -1.37
SYNE1-214ENST00000454018 ICAM4Q14773 271 aa6.46□□□□□ -1.37
SYNE1-214ENST00000454018 ZNF124Q15973 351 aa6.46□□□□□ -1.37
SYNE1-214ENST00000454018 SERTAD4-AS1Q5TG53 156 aa6.46□□□□□ -1.37
SYNE1-214ENST00000454018 TRPT1Q86TN4 253 aaKnown RBP6.46□□□□□ -1.37
SYNE1-214ENST00000454018 EXOC3-AS1Q8N2X6 119 aa6.46□□□□□ -1.37
SYNE1-214ENST00000454018 CMTM2Q8TAZ6 248 aa6.46□□□□□ -1.37
SYNE1-214ENST00000454018 RXFP4Q8TDU9 374 aa6.46□□□□□ -1.37
SYNE1-214ENST00000454018 NKX6-2Q9C056 277 aaPredicted RBP6.46□□□□□ -1.37
SYNE1-214ENST00000454018 LOC102724200A0A096LPH7 203 aaPredicted RBP6.45□□□□□ -1.38
SYNE1-214ENST00000454018 KIR2DL5BA0A0G2JN68 375 aa6.45□□□□□ -1.38
SYNE1-214ENST00000454018 KIR2DL5BA0A0G2JPC4 375 aa6.45□□□□□ -1.38
SYNE1-214ENST00000454018 KNCNA6PVL3 124 aa6.45□□□□□ -1.38
SYNE1-214ENST00000454018 H3BMM0 161 aa6.45□□□□□ -1.38
SYNE1-214ENST00000454018 M0R3E3 92 aa6.45□□□□□ -1.38
SYNE1-214ENST00000454018 DUSP14O95147 198 aaKnown RBP6.45□□□□□ -1.38
SYNE1-214ENST00000454018 APOC4P55056 127 aa6.45□□□□□ -1.38
SYNE1-214ENST00000454018 ZNF674Q2M3X9 581 aa6.45□□□□□ -1.38
SYNE1-214ENST00000454018 GDF5OSQ5U4N7 250 aa6.45□□□□□ -1.38
SYNE1-214ENST00000454018 KIR2DL5AQ8N109 375 aa6.45□□□□□ -1.38
SYNE1-214ENST00000454018 ARL6IP6Q8N6S5 226 aa6.45□□□□□ -1.38
SYNE1-214ENST00000454018 C5orf17Q8NAS9 161 aa6.45□□□□□ -1.38
SYNE1-214ENST00000454018 ZNF680Q8NEM1 530 aa6.45□□□□□ -1.38
SYNE1-214ENST00000454018 OR8A1Q8NGG7 326 aa6.45□□□□□ -1.38
SYNE1-214ENST00000454018 KIR2DL5BQ8NHK3 375 aa6.45□□□□□ -1.38
SYNE1-214ENST00000454018 TCEAL7Q9BRU2 100 aa6.45□□□□□ -1.38
SYNE1-214ENST00000454018 TMPRSS5Q9H3S3 457 aa6.45□□□□□ -1.38
SYNE1-214ENST00000454018 MANBALQ9NQG1 85 aa6.45□□□□□ -1.38
SYNE1-214ENST00000454018 A0A1B0GV50 99 aa6.45□□□□□ -1.38
SYNE1-214ENST00000454018 RBAKDNA6NC62 111 aa6.45□□□□□ -1.38
SYNE1-214ENST00000454018 RBMY1BA6NDE4 496 aaKnown RBP6.45□□□□□ -1.38
SYNE1-214ENST00000454018 RBMY1EA6NEQ0 496 aaKnown RBP6.45□□□□□ -1.38
SYNE1-214ENST00000454018 FAM74A7A6NL05 159 aa6.45□□□□□ -1.38
SYNE1-214ENST00000454018 A8MTW9 85 aa6.45□□□□□ -1.38
SYNE1-214ENST00000454018 ZNF705FA8MVS1 300 aaPredicted RBP6.45□□□□□ -1.38
SYNE1-214ENST00000454018 GGTLC3B5MD39 225 aa6.45□□□□□ -1.38
SYNE1-214ENST00000454018 F6UB75 175 aa6.45□□□□□ -1.38
SYNE1-214ENST00000454018 IFNA1P01562 189 aa6.45□□□□□ -1.38
SYNE1-214ENST00000454018 RBMY1DP0C7P1 496 aaKnown RBP6.45□□□□□ -1.38
SYNE1-214ENST00000454018 CNN1P51911 297 aaKnown RBP6.45□□□□□ -1.38
SYNE1-214ENST00000454018 DEFB1P60022 68 aa6.45□□□□□ -1.38
SYNE1-214ENST00000454018 UBE2G2P60604 165 aa6.45□□□□□ -1.38
SYNE1-214ENST00000454018 NUTF2P61970 127 aaKnown RBP6.45□□□□□ -1.38
SYNE1-214ENST00000454018 HIST1H1AQ02539 215 aaPredicted RBP6.45□□□□□ -1.38
SYNE1-214ENST00000454018 DEFB121Q5J5C9 76 aa6.45□□□□□ -1.38
SYNE1-214ENST00000454018 MORN3Q6PF18 240 aaPredicted RBP6.45□□□□□ -1.38
SYNE1-214ENST00000454018 LINC00322Q6ZN03 302 aaPredicted RBP6.45□□□□□ -1.38
SYNE1-214ENST00000454018 OR10J6PQ8NGY7 276 aa6.45□□□□□ -1.38
SYNE1-214ENST00000454018 YTHDF2Q9Y5A9 579 aaKnown RBP6.45□□□□□ -1.38
SYNE1-214ENST00000454018 SERTM2A0A1B0GWG4 89 aa6.44□□□□□ -1.38
SYNE1-214ENST00000454018 PGPA6NDG6 321 aa6.44□□□□□ -1.38
SYNE1-214ENST00000454018 NPIPB6E9PJ23 425 aa6.44□□□□□ -1.38
SYNE1-214ENST00000454018 SLC25A5P05141 298 aaKnown RBP6.44□□□□□ -1.38
SYNE1-214ENST00000454018 RPL35AP18077 110 aaKnown RBP6.44□□□□□ -1.38
SYNE1-214ENST00000454018 TAGLN2P37802 199 aaKnown RBP6.44□□□□□ -1.38
SYNE1-214ENST00000454018 Q6ZSN1 163 aa6.44□□□□□ -1.38
SYNE1-214ENST00000454018 OR4B1Q8NGF8 309 aa6.44□□□□□ -1.38
SYNE1-214ENST00000454018 LYPD6BQ8NI32 183 aa6.44□□□□□ -1.38
SYNE1-214ENST00000454018 B9D2Q9BPU9 175 aa6.44□□□□□ -1.38
SYNE1-214ENST00000454018 IGKV2-40A0A087WW87 121 aaPredicted RBP6.43□□□□□ -1.38
SYNE1-214ENST00000454018 PRAC2D3DTV9 90 aa6.43□□□□□ -1.38
SYNE1-214ENST00000454018 K7EQM0 130 aa6.43□□□□□ -1.38
SYNE1-214ENST00000454018 IGKV2D-40P01614 121 aaPredicted RBP6.43□□□□□ -1.38
SYNE1-214ENST00000454018 PET117Q6UWS5 81 aa6.43□□□□□ -1.38
SYNE1-214ENST00000454018 C9orf47Q6ZRZ4 202 aa6.43□□□□□ -1.38
SYNE1-214ENST00000454018 ODF3Q96PU9 254 aa6.43□□□□□ -1.38
SYNE1-214ENST00000454018 TXNDC17Q9BRA2 123 aa6.43□□□□□ -1.38
SYNE1-214ENST00000454018 ATG101Q9BSB4 218 aa6.43□□□□□ -1.38
SYNE1-214ENST00000454018 C1QTNF4Q9BXJ3 329 aa6.43□□□□□ -1.38
SYNE1-214ENST00000454018 GNG13Q9P2W3 67 aa6.43□□□□□ -1.38
SYNE1-214ENST00000454018 RPH3ALQ9UNE2 315 aa6.43□□□□□ -1.38
SYNE1-214ENST00000454018 USP17L23D6RBM5 183 aa6.42□□□□□ -1.38
SYNE1-214ENST00000454018 CA1P00915 261 aaPredicted RBP6.42□□□□□ -1.38
SYNE1-214ENST00000454018 IGKV3-20P01619 116 aa6.42□□□□□ -1.38
SYNE1-214ENST00000454018 TCRAP04437 139 aa6.42□□□□□ -1.38
SYNE1-214ENST00000454018 ZNF705DP0CH99 300 aaPredicted RBP6.42□□□□□ -1.38
SYNE1-214ENST00000454018 ZNF705BP0CI00 300 aaPredicted RBP6.42□□□□□ -1.38
SYNE1-214ENST00000454018 BCL2P10415 239 aa6.42□□□□□ -1.38
SYNE1-214ENST00000454018 GNG5P63218 68 aa6.42□□□□□ -1.38
SYNE1-214ENST00000454018 HAGHQ16775 308 aa6.42□□□□□ -1.38
SYNE1-214ENST00000454018 TMEM78Q5T7P6 136 aa6.42□□□□□ -1.38
SYNE1-214ENST00000454018 CST9LP1Q5W188 147 aa6.42□□□□□ -1.38
SYNE1-214ENST00000454018 AMTNQ6UX39 209 aa6.42□□□□□ -1.38
SYNE1-214ENST00000454018 ZNF767PQ75MW2 155 aa6.42□□□□□ -1.38
SYNE1-214ENST00000454018 CYB561D1Q8N8Q1 229 aa6.42□□□□□ -1.38
SYNE1-214ENST00000454018 HIST1H2BAQ96A08 127 aa6.42□□□□□ -1.38
SYNE1-214ENST00000454018 CSTL1Q9H114 145 aa6.42□□□□□ -1.38
SYNE1-214ENST00000454018 PRKDCP78527 4128 aaKnown RBP6.42□□□□□ -1.38
SYNE1-214ENST00000454018 TRAV34A0A0B4J273 112 aa6.41□□□□□ -1.38
SYNE1-214ENST00000454018 TRBV7-9A0A0J9YWB2 115 aa6.41□□□□□ -1.38
SYNE1-214ENST00000454018 GAGE12BA1L429 117 aa6.41□□□□□ -1.38
SYNE1-214ENST00000454018 GAGE12HA6NDE8 117 aa6.41□□□□□ -1.38
SYNE1-214ENST00000454018 FBLL1A6NHQ2 334 aaKnown RBP6.41□□□□□ -1.38
SYNE1-214ENST00000454018 C11orf94C9JXX5 98 aa6.41□□□□□ -1.38
SYNE1-214ENST00000454018 F6UZH7 168 aa6.41□□□□□ -1.38
SYNE1-214ENST00000454018 PEX7O00628 323 aa6.41□□□□□ -1.38
SYNE1-214ENST00000454018 AMBPP02760 352 aa6.41□□□□□ -1.38
SYNE1-214ENST00000454018 TSPOP30536 169 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms