RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 PRAC2D3DTV9 90 aa11.83□□□□□ -0.52
SF3A1-204ENST00000447376 C9orf62Q8N4C0 152 aa11.83□□□□□ -0.52
SF3A1-204ENST00000447376 TMED6Q8WW62 240 aa11.83□□□□□ -0.52
SF3A1-204ENST00000447376 MAP1LC3B2A6NCE7 125 aa11.82□□□□□ -0.52
SF3A1-204ENST00000447376 PGPA6NDG6 321 aa11.82□□□□□ -0.52
SF3A1-204ENST00000447376 NPIPB6E9PJ23 425 aa11.82□□□□□ -0.52
SF3A1-204ENST00000447376 SPART-AS1P0CW21 52 aa11.82□□□□□ -0.52
SF3A1-204ENST00000447376 LEPP41159 167 aa11.82□□□□□ -0.52
SF3A1-204ENST00000447376 RAB5CP51148 216 aa11.82□□□□□ -0.52
SF3A1-204ENST00000447376 EMP1P54849 157 aa11.82□□□□□ -0.52
SF3A1-204ENST00000447376 ZNF726P1Q15940 193 aa11.82□□□□□ -0.52
SF3A1-204ENST00000447376 ARL6IP6Q8N6S5 226 aa11.82□□□□□ -0.52
SF3A1-204ENST00000447376 FAM213BQ8TBF2 198 aa11.82□□□□□ -0.52
SF3A1-204ENST00000447376 SUN5Q8TC36 379 aa11.82□□□□□ -0.52
SF3A1-204ENST00000447376 LINC00477Q96M19 166 aa11.82□□□□□ -0.52
SF3A1-204ENST00000447376 MAP1LC3BQ9GZQ8 125 aa11.82□□□□□ -0.52
SF3A1-204ENST00000447376 TRAV12-2A0A075B6T6 113 aa11.81□□□□□ -0.52
SF3A1-204ENST00000447376 LOC102723971A0A1B0GUV8 181 aa11.81□□□□□ -0.52
SF3A1-204ENST00000447376 TMEM78Q5T7P6 136 aa11.81□□□□□ -0.52
SF3A1-204ENST00000447376 SSX7Q7RTT5 188 aa11.81□□□□□ -0.52
SF3A1-204ENST00000447376 C1orf158Q8N1D5 194 aa11.81□□□□□ -0.52
SF3A1-204ENST00000447376 ODF3Q96PU9 254 aa11.81□□□□□ -0.52
SF3A1-204ENST00000447376 LINC01587Q99440 93 aa11.81□□□□□ -0.52
SF3A1-204ENST00000447376 LCE6AA0A183 80 aa11.8□□□□□ -0.52
SF3A1-204ENST00000447376 C9orf47Q6ZRZ4 202 aa11.8□□□□□ -0.52
SF3A1-204ENST00000447376 C2CD4CQ8TF44 421 aa11.8□□□□□ -0.52
SF3A1-204ENST00000447376 C20orf144Q9BQM9 153 aa11.8□□□□□ -0.52
SF3A1-204ENST00000447376 NKX6-2Q9C056 277 aaPredicted RBP11.8□□□□□ -0.52
SF3A1-204ENST00000447376 CSMD3Q7Z407 3707 aa11.8□□□□□ -0.52
SF3A1-204ENST00000447376 TRAV10A0A0B4J240 114 aa11.79□□□□□ -0.52
SF3A1-204ENST00000447376 A0A1W2PRE2 83 aa11.79□□□□□ -0.52
SF3A1-204ENST00000447376 RBAKDNA6NC62 111 aa11.79□□□□□ -0.52
SF3A1-204ENST00000447376 TEX46H3BTG2 121 aa11.79□□□□□ -0.52
SF3A1-204ENST00000447376 SLC25A5P05141 298 aaKnown RBP11.79□□□□□ -0.52
SF3A1-204ENST00000447376 PRB4P10163 310 aaPredicted RBP11.79□□□□□ -0.52
SF3A1-204ENST00000447376 FHITP49789 147 aa11.79□□□□□ -0.52
SF3A1-204ENST00000447376 FGF8P55075 233 aaPredicted RBP11.79□□□□□ -0.52
SF3A1-204ENST00000447376 SFT2D1Q8WV19 159 aa11.79□□□□□ -0.52
SF3A1-204ENST00000447376 IGKV2-40A0A087WW87 121 aaPredicted RBP11.78□□□□□ -0.52
SF3A1-204ENST00000447376 DIRC3C9JPN6 131 aa11.78□□□□□ -0.52
SF3A1-204ENST00000447376 K7EQM0 130 aa11.78□□□□□ -0.52
SF3A1-204ENST00000447376 CRXO43186 299 aaPredicted RBP11.78□□□□□ -0.52
SF3A1-204ENST00000447376 IGKV2D-40P01614 121 aaPredicted RBP11.78□□□□□ -0.52
SF3A1-204ENST00000447376 H2AFB1P0C5Y9 115 aa11.78□□□□□ -0.52
SF3A1-204ENST00000447376 CT45A10P0DMU9 189 aa11.78□□□□□ -0.52
SF3A1-204ENST00000447376 C5orf17Q8NAS9 161 aa11.78□□□□□ -0.52
SF3A1-204ENST00000447376 MBD3L1Q8WWY6 194 aa11.78□□□□□ -0.52
SF3A1-204ENST00000447376 NIPSNAP3BQ9BS92 247 aa11.78□□□□□ -0.52
SF3A1-204ENST00000447376 AGPAT4-IT1Q9H0P7 198 aa11.78□□□□□ -0.52
SF3A1-204ENST00000447376 STARD9Q9P2P6 4700 aa11.77□□□□□ -0.53
SF3A1-204ENST00000447376 SERTM2A0A1B0GWG4 89 aa11.77□□□□□ -0.53
SF3A1-204ENST00000447376 H7BYZ3 331 aa11.77□□□□□ -0.53
SF3A1-204ENST00000447376 HTN1P15515 57 aa11.77□□□□□ -0.53
SF3A1-204ENST00000447376 ZNF138P52744 262 aa11.77□□□□□ -0.53
SF3A1-204ENST00000447376 TCTAP57738 103 aa11.77□□□□□ -0.53
SF3A1-204ENST00000447376 TAS2R60P59551 318 aa11.77□□□□□ -0.53
SF3A1-204ENST00000447376 SUMO1P63165 101 aaKnown RBP11.77□□□□□ -0.53
SF3A1-204ENST00000447376 ERCC8Q13216 396 aa11.77□□□□□ -0.53
SF3A1-204ENST00000447376 Q6ZTC4 211 aa11.77□□□□□ -0.53
SF3A1-204ENST00000447376 CCDC28AQ8IWP9 274 aa11.77□□□□□ -0.53
SF3A1-204ENST00000447376 PLA2G2EQ9NZK7 142 aa11.77□□□□□ -0.53
SF3A1-204ENST00000447376 RPH3ALQ9UNE2 315 aa11.77□□□□□ -0.53
SF3A1-204ENST00000447376 TRBV7-9A0A0J9YWB2 115 aa11.76□□□□□ -0.53
SF3A1-204ENST00000447376 ZNF705GA8MUZ8 300 aaPredicted RBP11.76□□□□□ -0.53
SF3A1-204ENST00000447376 J3KRW8 73 aa11.76□□□□□ -0.53
SF3A1-204ENST00000447376 NMBP08949 121 aa11.76□□□□□ -0.53
SF3A1-204ENST00000447376 SULT1A2P50226 295 aa11.76□□□□□ -0.53
SF3A1-204ENST00000447376 PPT1P50897 306 aa11.76□□□□□ -0.53
SF3A1-204ENST00000447376 NKX2-5P52952 324 aaPredicted RBP11.76□□□□□ -0.53
SF3A1-204ENST00000447376 FAM222AQ5U5X8 452 aa11.76□□□□□ -0.53
SF3A1-204ENST00000447376 C16orf74Q96GX8 76 aa11.76□□□□□ -0.53
SF3A1-204ENST00000447376 VGLL1Q99990 258 aa11.76□□□□□ -0.53
SF3A1-204ENST00000447376 TMPRSS5Q9H3S3 457 aa11.76□□□□□ -0.53
SF3A1-204ENST00000447376 CELA1Q9UNI1 258 aa11.76□□□□□ -0.53
SF3A1-204ENST00000447376 YTHDF2Q9Y5A9 579 aaKnown RBP11.76□□□□□ -0.53
SF3A1-204ENST00000447376 KMT2CQ8NEZ4 4911 aaKnown RBP11.76□□□□□ -0.53
SF3A1-204ENST00000447376 IFNA7P01567 189 aa11.75□□□□□ -0.53
SF3A1-204ENST00000447376 UBE2G2P60604 165 aa11.75□□□□□ -0.53
SF3A1-204ENST00000447376 ZNF493Q6ZR52 646 aa11.75□□□□□ -0.53
SF3A1-204ENST00000447376 GOLT1AQ6ZVE7 132 aa11.75□□□□□ -0.53
SF3A1-204ENST00000447376 ZNF492Q9P255 531 aa11.75□□□□□ -0.53
SF3A1-204ENST00000447376 DKK2Q9UBU2 259 aa11.75□□□□□ -0.53
SF3A1-204ENST00000447376 LENEPQ9Y5L5 61 aa11.75□□□□□ -0.53
SF3A1-204ENST00000447376 ARL2-SNX15V9GYD0 113 aa11.75□□□□□ -0.53
SF3A1-204ENST00000447376 TENM2Q9NT68 2774 aa11.75□□□□□ -0.53
SF3A1-204ENST00000447376 DEFB131BA0A096LNP1 70 aa11.74□□□□□ -0.53
SF3A1-204ENST00000447376 LYRM9A8MSI8 78 aa11.74□□□□□ -0.53
SF3A1-204ENST00000447376 IGLL5B9A064 214 aa11.74□□□□□ -0.53
SF3A1-204ENST00000447376 GPX1P07203 203 aa11.74□□□□□ -0.53
SF3A1-204ENST00000447376 DAD1P61803 113 aa11.74□□□□□ -0.53
SF3A1-204ENST00000447376 GFI1BQ5VTD9 330 aa11.74□□□□□ -0.53
SF3A1-204ENST00000447376 EPDR1Q9UM22 224 aa11.74□□□□□ -0.53
SF3A1-204ENST00000447376 TRAV12-3A0A0B4J271 114 aa11.73□□□□□ -0.53
SF3A1-204ENST00000447376 FBLL1A6NHQ2 334 aaKnown RBP11.73□□□□□ -0.53
SF3A1-204ENST00000447376 FAM74A7A6NL05 159 aa11.73□□□□□ -0.53
SF3A1-204ENST00000447376 GGTLC3B5MD39 225 aa11.73□□□□□ -0.53
SF3A1-204ENST00000447376 F6UZH7 168 aa11.73□□□□□ -0.53
SF3A1-204ENST00000447376 TCRAP04437 139 aa11.73□□□□□ -0.53
SF3A1-204ENST00000447376 CRISP2P16562 243 aa11.73□□□□□ -0.53
SF3A1-204ENST00000447376 C12orf74Q32Q52 190 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 146.6 ms