RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 DKK2Q9UBU2 259 aa9.34□□□□□ -0.91
MSH6-204ENST00000445503 VMO1Q7Z5L0 202 aa9.34□□□□□ -0.91
MSH6-204ENST00000445503 LYPD1Q8N2G4 141 aa9.34□□□□□ -0.91
MSH6-204ENST00000445503 PRR25Q96S07 402 aa9.34□□□□□ -0.91
MSH6-204ENST00000445503 GATA1P15976 413 aaPredicted RBP9.34□□□□□ -0.91
MSH6-204ENST00000445503 OR2K2Q8NGT1 345 aa9.34□□□□□ -0.91
MSH6-204ENST00000445503 SCRT2Q9NQ03 307 aa9.34□□□□□ -0.91
MSH6-204ENST00000445503 NCOR2Q9Y618 2525 aa9.33□□□□□ -0.92
MSH6-204ENST00000445503 CSPG4Q6UVK1 2322 aa9.33□□□□□ -0.92
MSH6-204ENST00000445503 NDUFA3O95167 84 aa9.33□□□□□ -0.92
MSH6-204ENST00000445503 OCIAD2Q56VL3 154 aa9.33□□□□□ -0.92
MSH6-204ENST00000445503 PCP2Q8IVA1 136 aa9.33□□□□□ -0.92
MSH6-204ENST00000445503 C8orf31Q8N9H6 132 aa9.33□□□□□ -0.92
MSH6-204ENST00000445503 METTL26Q96S19 204 aa9.33□□□□□ -0.92
MSH6-204ENST00000445503 TTTY13Q9BZ97 58 aa9.33□□□□□ -0.92
MSH6-204ENST00000445503 NHP2Q9NX24 153 aaKnown RBP9.33□□□□□ -0.92
MSH6-204ENST00000445503 F5H697 171 aa9.33□□□□□ -0.92
MSH6-204ENST00000445503 DEFB125Q8N687 156 aa9.33□□□□□ -0.92
MSH6-204ENST00000445503 VKORC1Q9BQB6 163 aa9.33□□□□□ -0.92
MSH6-204ENST00000445503 RAI1Q7Z5J4 1906 aaPredicted RBP9.33□□□□□ -0.92
MSH6-204ENST00000445503 A0A0G2JLM5 398 aa9.33□□□□□ -0.92
MSH6-204ENST00000445503 SEC11AP67812 179 aa9.33□□□□□ -0.92
MSH6-204ENST00000445503 SMIM13P0DJ93 91 aa9.32□□□□□ -0.92
MSH6-204ENST00000445503 SAMD13Q5VXD3 122 aa9.32□□□□□ -0.92
MSH6-204ENST00000445503 GLMPQ8WWB7 406 aa9.32□□□□□ -0.92
MSH6-204ENST00000445503 SPRY2O43597 315 aa9.32□□□□□ -0.92
MSH6-204ENST00000445503 CRIP1P50238 77 aa9.32□□□□□ -0.92
MSH6-204ENST00000445503 RNF5Q99942 180 aa9.32□□□□□ -0.92
MSH6-204ENST00000445503 ZNF562Q6V9R5 426 aa9.32□□□□□ -0.92
MSH6-204ENST00000445503 TMEM219Q86XT9 240 aa9.32□□□□□ -0.92
MSH6-204ENST00000445503 TMEM158Q8WZ71 300 aa9.32□□□□□ -0.92
MSH6-204ENST00000445503 ASPMQ8IZT6 3477 aa9.32□□□□□ -0.92
MSH6-204ENST00000445503 SMAD7O15105 426 aaKnown RBP9.31□□□□□ -0.92
MSH6-204ENST00000445503 FSTL3O95633 263 aa9.31□□□□□ -0.92
MSH6-204ENST00000445503 LY6EQ16553 131 aa9.31□□□□□ -0.92
MSH6-204ENST00000445503 LINC01545Q5VT33 79 aa9.31□□□□□ -0.92
MSH6-204ENST00000445503 HIST1H4GQ99525 98 aa9.31□□□□□ -0.92
MSH6-204ENST00000445503 G3V318 75 aa9.31□□□□□ -0.92
MSH6-204ENST00000445503 IGLV2-11P01706 119 aa9.31□□□□□ -0.92
MSH6-204ENST00000445503 HSD52Q0P140 79 aa9.31□□□□□ -0.92
MSH6-204ENST00000445503 TRAV26-2A0A0B4J265 109 aa9.31□□□□□ -0.92
MSH6-204ENST00000445503 NDUFS7O75251 213 aa9.31□□□□□ -0.92
MSH6-204ENST00000445503 SFTA2Q6UW10 78 aa9.31□□□□□ -0.92
MSH6-204ENST00000445503 SCGB1D4Q6XE38 83 aa9.31□□□□□ -0.92
MSH6-204ENST00000445503 IL17RELQ6ZVW7 336 aa9.31□□□□□ -0.92
MSH6-204ENST00000445503 K7EMI3 77 aa9.31□□□□□ -0.92
MSH6-204ENST00000445503 IGHV3-11P01762 117 aa9.31□□□□□ -0.92
MSH6-204ENST00000445503 BOD1L2Q8IYS8 172 aa9.31□□□□□ -0.92
MSH6-204ENST00000445503 H3BVH4 76 aa9.3□□□□□ -0.92
MSH6-204ENST00000445503 ZC2HC1BQ5TFG8 222 aa9.3□□□□□ -0.92
MSH6-204ENST00000445503 ZNF502Q8TBZ5 544 aa9.3□□□□□ -0.92
MSH6-204ENST00000445503 TNFRSF6BO95407 300 aa9.3□□□□□ -0.92
MSH6-204ENST00000445503 DSCAML1Q8TD84 2053 aa9.3□□□□□ -0.92
MSH6-204ENST00000445503 CACNA1AO00555 2505 aa9.3□□□□□ -0.92
MSH6-204ENST00000445503 PRTN3P24158 256 aa9.3□□□□□ -0.92
MSH6-204ENST00000445503 SMAGPQ0VAQ4 97 aa9.3□□□□□ -0.92
MSH6-204ENST00000445503 PDE6HQ13956 83 aa9.3□□□□□ -0.92
MSH6-204ENST00000445503 WFDC12Q8WWY7 111 aa9.3□□□□□ -0.92
MSH6-204ENST00000445503 SMIM17P0DL12 118 aa9.29□□□□□ -0.92
MSH6-204ENST00000445503 DYNAPQ8N1N2 210 aa9.29□□□□□ -0.92
MSH6-204ENST00000445503 Q8NA96 180 aa9.29□□□□□ -0.92
MSH6-204ENST00000445503 PTPRBP23467 1997 aa9.29□□□□□ -0.92
MSH6-204ENST00000445503 ADGRG4Q8IZF6 3080 aa9.29□□□□□ -0.92
MSH6-204ENST00000445503 CRYGBP07316 175 aa9.29□□□□□ -0.92
MSH6-204ENST00000445503 OR4X2Q8NGF9 303 aa9.29□□□□□ -0.92
MSH6-204ENST00000445503 JKAMPQ9P055 326 aa9.29□□□□□ -0.92
MSH6-204ENST00000445503 PHLDA3Q9Y5J5 127 aa9.29□□□□□ -0.92
MSH6-204ENST00000445503 PRAC2D3DTV9 90 aa9.29□□□□□ -0.92
MSH6-204ENST00000445503 IGKCP01834 107 aa9.29□□□□□ -0.92
MSH6-204ENST00000445503 SAP30O75446 220 aa9.28□□□□□ -0.92
MSH6-204ENST00000445503 ZNF80P51504 273 aaPredicted RBP9.28□□□□□ -0.92
MSH6-204ENST00000445503 ATP5G2Q06055 141 aa9.28□□□□□ -0.92
MSH6-204ENST00000445503 SRSF9Q13242 221 aaKnown RBP eCLIP9.28□□□□□ -0.92
MSH6-204ENST00000445503 EEF1AKMT3Q96AZ1 226 aa9.28□□□□□ -0.92
MSH6-204ENST00000445503 NXT2Q9NPJ8 142 aaKnown RBP9.28□□□□□ -0.92
MSH6-204ENST00000445503 TRGV3P03979 118 aa9.28□□□□□ -0.92
MSH6-204ENST00000445503 TRAV40A0A0B4J280 105 aa9.28□□□□□ -0.92
MSH6-204ENST00000445503 DPM2O94777 84 aa9.28□□□□□ -0.92
MSH6-204ENST00000445503 SAMD5Q5TGI4 173 aa9.28□□□□□ -0.92
MSH6-204ENST00000445503 OR9G4Q8NGQ1 327 aa9.28□□□□□ -0.92
MSH6-204ENST00000445503 FANCD2OSQ96PS1 177 aa9.28□□□□□ -0.92
MSH6-204ENST00000445503 NPIPB6E9PJ23 425 aa9.27□□□□□ -0.92
MSH6-204ENST00000445503 K7ERJ3 54 aa9.27□□□□□ -0.92
MSH6-204ENST00000445503 ATP6V0E1O15342 81 aa9.27□□□□□ -0.92
MSH6-204ENST00000445503 PPBPP02775 128 aa9.27□□□□□ -0.92
MSH6-204ENST00000445503 SRD5A1P18405 259 aa9.27□□□□□ -0.92
MSH6-204ENST00000445503 MRGPRG-AS1Q2M3A8 158 aa9.27□□□□□ -0.92
MSH6-204ENST00000445503 LGALS9BQ3B8N2 356 aa9.27□□□□□ -0.92
MSH6-204ENST00000445503 LGALS9CQ6DKI2 356 aa9.27□□□□□ -0.92
MSH6-204ENST00000445503 IGKV3-20P01619 116 aa9.27□□□□□ -0.93
MSH6-204ENST00000445503 LCNL1Q6ZST4 164 aa9.27□□□□□ -0.93
MSH6-204ENST00000445503 SRSF8Q9BRL6 282 aaKnown RBP9.27□□□□□ -0.93
MSH6-204ENST00000445503 OR10J6PQ8NGY7 276 aa9.27□□□□□ -0.93
MSH6-204ENST00000445503 SVIPQ8NHG7 77 aa9.27□□□□□ -0.93
MSH6-204ENST00000445503 SORL1Q92673 2214 aa9.27□□□□□ -0.93
MSH6-204ENST00000445503 HTN1P15515 57 aa9.27□□□□□ -0.93
MSH6-204ENST00000445503 SCGB3A1Q96QR1 104 aa9.27□□□□□ -0.93
MSH6-204ENST00000445503 IGLV11-55A0A075B6I3 123 aa9.26□□□□□ -0.93
MSH6-204ENST00000445503 TMEM8BA6NDV4 472 aa9.26□□□□□ -0.93
MSH6-204ENST00000445503 K7EP13 123 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms