RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 SSR2P43308 183 aa2.68□□□□□ -1.98
CCDC88A-206ENST00000430086 GNG4P50150 75 aa2.68□□□□□ -1.98
CCDC88A-206ENST00000430086 DSCR4P56555 118 aaPredicted RBP2.68□□□□□ -1.98
CCDC88A-206ENST00000430086 MEIG1Q5JSS6 88 aa2.68□□□□□ -1.98
CCDC88A-206ENST00000430086 LINC00311Q8N616 119 aa2.68□□□□□ -1.98
CCDC88A-206ENST00000430086 C14orf144Q96I85 54 aa2.68□□□□□ -1.98
CCDC88A-206ENST00000430086 SDF2Q99470 211 aa2.68□□□□□ -1.98
CCDC88A-206ENST00000430086 SPANXDQ9BXN6 97 aa2.68□□□□□ -1.98
CCDC88A-206ENST00000430086 CST11Q9H112 138 aa2.68□□□□□ -1.98
CCDC88A-206ENST00000430086 FRMPD1Q5SYB0 1578 aa2.68□□□□□ -1.98
CCDC88A-206ENST00000430086 SBF1O95248 1867 aa2.68□□□□□ -1.98
CCDC88A-206ENST00000430086 SCN9AQ15858 1988 aa2.68□□□□□ -1.98
CCDC88A-206ENST00000430086 SCN8AQ9UQD0 1980 aa2.68□□□□□ -1.98
CCDC88A-206ENST00000430086 FANCMQ8IYD8 2048 aa2.68□□□□□ -1.98
CCDC88A-206ENST00000430086 CDK5RAP2Q96SN8 1893 aa2.67□□□□□ -1.98
CCDC88A-206ENST00000430086 BCL9LQ86UU0 1499 aa2.67□□□□□ -1.98
CCDC88A-206ENST00000430086 ZNF705FA8MVS1 300 aaPredicted RBP2.67□□□□□ -1.98
CCDC88A-206ENST00000430086 E7EUB6 86 aa2.67□□□□□ -1.98
CCDC88A-206ENST00000430086 SNAPC5O75971 98 aa2.67□□□□□ -1.98
CCDC88A-206ENST00000430086 ELOBQ15370 118 aa2.67□□□□□ -1.98
CCDC88A-206ENST00000430086 CCSMST1Q4G0I0 132 aa2.67□□□□□ -1.98
CCDC88A-206ENST00000430086 ARPINQ7Z6K5 226 aa2.67□□□□□ -1.98
CCDC88A-206ENST00000430086 ZNF431Q8TF32 576 aaPredicted RBP2.67□□□□□ -1.98
CCDC88A-206ENST00000430086 PP6455Q8WZ26 134 aa2.67□□□□□ -1.98
CCDC88A-206ENST00000430086 Q96M85 177 aa2.67□□□□□ -1.98
CCDC88A-206ENST00000430086 NABP2Q9BQ15 211 aa2.67□□□□□ -1.98
CCDC88A-206ENST00000430086 SNRNP25Q9BV90 132 aaKnown RBP2.67□□□□□ -1.98
CCDC88A-206ENST00000430086 SCN3BQ9NY72 215 aa2.67□□□□□ -1.98
CCDC88A-206ENST00000430086 MPC1Q9Y5U8 109 aa2.67□□□□□ -1.98
CCDC88A-206ENST00000430086 LHFPL6Q9Y693 200 aa2.67□□□□□ -1.98
CCDC88A-206ENST00000430086 HEATR5AQ86XA9 2040 aa2.67□□□□□ -1.98
CCDC88A-206ENST00000430086 SEC16AO15027 2179 aa2.67□□□□□ -1.98
CCDC88A-206ENST00000430086 MALRD1Q5VYJ5 2156 aa2.67□□□□□ -1.98
CCDC88A-206ENST00000430086 SLIT2O94813 1529 aa2.67□□□□□ -1.98
CCDC88A-206ENST00000430086 IGKV3D-11A0A0A0MRZ8 115 aa2.66□□□□□ -1.98
CCDC88A-206ENST00000430086 ZNF736B4DX44 427 aaPredicted RBP2.66□□□□□ -1.98
CCDC88A-206ENST00000430086 E7EQL1 145 aa2.66□□□□□ -1.98
CCDC88A-206ENST00000430086 ERC2-IT1O76042 136 aa2.66□□□□□ -1.98
CCDC88A-206ENST00000430086 IGLV1-51P01701 117 aa2.66□□□□□ -1.98
CCDC88A-206ENST00000430086 CD3DP04234 171 aa2.66□□□□□ -1.98
CCDC88A-206ENST00000430086 C1orf134Q5TEV5 83 aa2.66□□□□□ -1.98
CCDC88A-206ENST00000430086 KRTAP5-7Q6L8G8 165 aa2.66□□□□□ -1.98
CCDC88A-206ENST00000430086 BRD3OSQ6XYD6 125 aa2.66□□□□□ -1.98
CCDC88A-206ENST00000430086 OTOSQ8NHW6 89 aa2.66□□□□□ -1.98
CCDC88A-206ENST00000430086 SFT2D1Q8WV19 159 aa2.66□□□□□ -1.98
CCDC88A-206ENST00000430086 PSMF1Q92530 271 aa2.66□□□□□ -1.98
CCDC88A-206ENST00000430086 TVP23CQ96ET8 276 aa2.66□□□□□ -1.98
CCDC88A-206ENST00000430086 NAA38Q9BRA0 125 aaKnown RBP2.66□□□□□ -1.98
CCDC88A-206ENST00000430086 POLEQ07864 2286 aa2.65□□□□□ -1.99
CCDC88A-206ENST00000430086 IGHV1-24A0A0C4DH33 117 aa2.65□□□□□ -1.99
CCDC88A-206ENST00000430086 C3orf85A0A1B0GTC6 90 aa2.65□□□□□ -1.99
CCDC88A-206ENST00000430086 TCRBV4S1A1TA0A5B7 111 aa2.65□□□□□ -1.99
CCDC88A-206ENST00000430086 HYPMO75409 117 aa2.65□□□□□ -1.99
CCDC88A-206ENST00000430086 CD14P08571 375 aa2.65□□□□□ -1.99
CCDC88A-206ENST00000430086 PPP3R1P63098 170 aa2.65□□□□□ -1.99
CCDC88A-206ENST00000430086 BTG2P78543 158 aa2.65□□□□□ -1.99
CCDC88A-206ENST00000430086 SMIM7Q9BQ49 75 aa2.65□□□□□ -1.99
CCDC88A-206ENST00000430086 COA4Q9NYJ1 87 aa2.65□□□□□ -1.99
CCDC88A-206ENST00000430086 LSM2Q9Y333 95 aaKnown RBP2.65□□□□□ -1.99
CCDC88A-206ENST00000430086 RGS12O14924 1447 aa2.65□□□□□ -1.99
CCDC88A-206ENST00000430086 TRAV12-2A0A075B6T6 113 aa2.64□□□□□ -1.99
CCDC88A-206ENST00000430086 A0A087WSZ3 146 aa2.64□□□□□ -1.99
CCDC88A-206ENST00000430086 TRAV10A0A0B4J240 114 aa2.64□□□□□ -1.99
CCDC88A-206ENST00000430086 TRAV12-1A0A0B4J245 112 aa2.64□□□□□ -1.99
CCDC88A-206ENST00000430086 IFITM5A6NNB3 132 aa2.64□□□□□ -1.99
CCDC88A-206ENST00000430086 M0R2P5 195 aa2.64□□□□□ -1.99
CCDC88A-206ENST00000430086 HIST1H1DP16402 221 aaKnown RBP2.64□□□□□ -1.99
CCDC88A-206ENST00000430086 CASC2Q6XLA1 102 aa2.64□□□□□ -1.99
CCDC88A-206ENST00000430086 KRTAP13-1Q8IUC0 172 aa2.64□□□□□ -1.99
CCDC88A-206ENST00000430086 C4orf3Q8WVX3 66 aa2.64□□□□□ -1.99
CCDC88A-206ENST00000430086 DPH3Q96FX2 82 aa2.64□□□□□ -1.99
CCDC88A-206ENST00000430086 BOKQ9UMX3 212 aaPredicted RBP2.64□□□□□ -1.99
CCDC88A-206ENST00000430086 ANAPC1Q9H1A4 1944 aa2.64□□□□□ -1.99
CCDC88A-206ENST00000430086 MYO5AQ9Y4I1 1855 aaKnown RBP2.63□□□□□ -1.99
CCDC88A-206ENST00000430086 CUL9Q8IWT3 2517 aa2.63□□□□□ -1.99
CCDC88A-206ENST00000430086 M0R129 80 aa2.63□□□□□ -1.99
CCDC88A-206ENST00000430086 TPPP2P59282 170 aa2.63□□□□□ -1.99
CCDC88A-206ENST00000430086 Q6ZUT4 128 aa2.63□□□□□ -1.99
CCDC88A-206ENST00000430086 GTF2H5Q6ZYL4 71 aa2.63□□□□□ -1.99
CCDC88A-206ENST00000430086 C8orf59Q8N0T1 100 aaPredicted RBP2.63□□□□□ -1.99
CCDC88A-206ENST00000430086 ATP6V0E2Q8NHE4 81 aa2.63□□□□□ -1.99
CCDC88A-206ENST00000430086 TIMM21Q9BVV7 248 aa2.63□□□□□ -1.99
CCDC88A-206ENST00000430086 NAA60Q9H7X0 242 aa2.63□□□□□ -1.99
CCDC88A-206ENST00000430086 SMARCA4P51532 1647 aa2.63□□□□□ -1.99
CCDC88A-206ENST00000430086 MBD5Q9P267 1494 aa2.63□□□□□ -1.99
CCDC88A-206ENST00000430086 MYO16Q9Y6X6 1858 aa2.62□□□□□ -1.99
CCDC88A-206ENST00000430086 SHROOM3Q8TF72 1996 aa2.62□□□□□ -1.99
CCDC88A-206ENST00000430086 LOC107984156A0A0G2JMH3 177 aa2.62□□□□□ -1.99
CCDC88A-206ENST00000430086 A0A1W2PNN7 141 aa2.62□□□□□ -1.99
CCDC88A-206ENST00000430086 B4DSR2 109 aa2.62□□□□□ -1.99
CCDC88A-206ENST00000430086 EDF1O60869 148 aaKnown RBP2.62□□□□□ -1.99
CCDC88A-206ENST00000430086 CD2P06729 351 aa2.62□□□□□ -1.99
CCDC88A-206ENST00000430086 ATP11AUNQ6ZP68 121 aa2.62□□□□□ -1.99
CCDC88A-206ENST00000430086 ARL17AQ8IVW1 177 aa2.62□□□□□ -1.99
CCDC88A-206ENST00000430086 NOP16Q9Y3C1 178 aaKnown RBP2.62□□□□□ -1.99
CCDC88A-206ENST00000430086 CACNA1DQ01668 2161 aa2.61□□□□□ -1.99
CCDC88A-206ENST00000430086 SHANK1Q9Y566 2161 aa2.61□□□□□ -1.99
CCDC88A-206ENST00000430086 COL5A1P20908 1838 aaPredicted RBP2.61□□□□□ -1.99
CCDC88A-206ENST00000430086 RTEL1-TNFRSF6BF6WH68 1400 aa2.61□□□□□ -1.99
CCDC88A-206ENST00000430086 VPS8Q8N3P4 1428 aa2.61□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms