RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 FAM181BA6NEQ2 426 aa6.51□□□□□ -1.37
CD44-208ENST00000428726 NDUFA3O95167 84 aa6.51□□□□□ -1.37
CD44-208ENST00000428726 CTSGP08311 255 aa6.51□□□□□ -1.37
CD44-208ENST00000428726 PF4V1P10720 104 aa6.51□□□□□ -1.37
CD44-208ENST00000428726 CRIP1P50238 77 aa6.51□□□□□ -1.37
CD44-208ENST00000428726 RASL11AQ6T310 242 aa6.51□□□□□ -1.37
CD44-208ENST00000428726 C1orf122Q6ZSJ8 110 aa6.51□□□□□ -1.37
CD44-208ENST00000428726 C5orf17Q8NAS9 161 aa6.51□□□□□ -1.37
CD44-208ENST00000428726 GRAMD2BQ96HH9 432 aa6.51□□□□□ -1.37
CD44-208ENST00000428726 GPR82Q96P67 336 aa6.51□□□□□ -1.37
CD44-208ENST00000428726 DUX3Q96PT4 197 aa6.51□□□□□ -1.37
CD44-208ENST00000428726 C20orf144Q9BQM9 153 aa6.51□□□□□ -1.37
CD44-208ENST00000428726 C1RLQ9NZP8 487 aa6.51□□□□□ -1.37
CD44-208ENST00000428726 ODF3BA8MYP8 253 aa6.51□□□□□ -1.37
CD44-208ENST00000428726 ORM1P02763 201 aa6.51□□□□□ -1.37
CD44-208ENST00000428726 HIST1H1EP10412 219 aaKnown RBP6.51□□□□□ -1.37
CD44-208ENST00000428726 TSPOP30536 169 aa6.51□□□□□ -1.37
CD44-208ENST00000428726 ZNF80P51504 273 aaPredicted RBP6.51□□□□□ -1.37
CD44-208ENST00000428726 MFAP4P55083 255 aa6.51□□□□□ -1.37
CD44-208ENST00000428726 DTX2Q86UW9 622 aa6.51□□□□□ -1.37
CD44-208ENST00000428726 BPIFA4PQ86YQ2 179 aa6.51□□□□□ -1.37
CD44-208ENST00000428726 MBD6Q96DN6 1003 aa6.51□□□□□ -1.37
CD44-208ENST00000428726 TMEM14CQ9P0S9 112 aa6.51□□□□□ -1.37
CD44-208ENST00000428726 A0A087X0K7 114 aa6.5□□□□□ -1.37
CD44-208ENST00000428726 UNQ9165/PRO28630Q6UXU0 137 aa6.5□□□□□ -1.37
CD44-208ENST00000428726 ZNF562Q6V9R5 426 aa6.5□□□□□ -1.37
CD44-208ENST00000428726 OR4B1Q8NGF8 309 aa6.5□□□□□ -1.37
CD44-208ENST00000428726 FMC1Q96HJ9 113 aa6.5□□□□□ -1.37
CD44-208ENST00000428726 SIRPDQ9H106 197 aa6.5□□□□□ -1.37
CD44-208ENST00000428726 PRORYQ9H606 182 aa6.5□□□□□ -1.37
CD44-208ENST00000428726 HIF1ANQ9NWT6 349 aa6.5□□□□□ -1.37
CD44-208ENST00000428726 UQCR10Q9UDW1 63 aa6.5□□□□□ -1.37
CD44-208ENST00000428726 IGHV2-70DA0A0C4DH43 119 aa6.5□□□□□ -1.37
CD44-208ENST00000428726 CHEK1O14757 476 aa6.5□□□□□ -1.37
CD44-208ENST00000428726 NPFFO15130 113 aa6.5□□□□□ -1.37
CD44-208ENST00000428726 NUDT3O95989 172 aa6.5□□□□□ -1.37
CD44-208ENST00000428726 GATA1P15976 413 aaPredicted RBP6.5□□□□□ -1.37
CD44-208ENST00000428726 RELQ04864 619 aaPredicted RBP6.5□□□□□ -1.37
CD44-208ENST00000428726 TM4SF20Q53R12 229 aa6.5□□□□□ -1.37
CD44-208ENST00000428726 OR10J3Q5JRS4 329 aa6.5□□□□□ -1.37
CD44-208ENST00000428726 CCDC144NLQ6NUI1 221 aa6.5□□□□□ -1.37
CD44-208ENST00000428726 TMEM190Q8WZ59 177 aa6.5□□□□□ -1.37
CD44-208ENST00000428726 PSG8Q9UQ74 426 aa6.5□□□□□ -1.37
CD44-208ENST00000428726 OR4C46A6NHA9 309 aa6.5□□□□□ -1.37
CD44-208ENST00000428726 OOSP1A8MZH6 123 aa6.5□□□□□ -1.37
CD44-208ENST00000428726 TOMM40O96008 361 aa6.5□□□□□ -1.37
CD44-208ENST00000428726 EVI2AP22794 236 aa6.5□□□□□ -1.37
CD44-208ENST00000428726 OTORQ9NRC9 128 aa6.5□□□□□ -1.37
CD44-208ENST00000428726 MRPL27Q9P0M9 148 aaKnown RBP6.5□□□□□ -1.37
CD44-208ENST00000428726 TRBV19A0A075B6N1 114 aa6.49□□□□□ -1.37
CD44-208ENST00000428726 K7EMI3 77 aa6.49□□□□□ -1.37
CD44-208ENST00000428726 TGFAP01135 160 aa6.49□□□□□ -1.37
CD44-208ENST00000428726 TRGV3P03979 118 aa6.49□□□□□ -1.37
CD44-208ENST00000428726 SFTPCP11686 197 aa6.49□□□□□ -1.37
CD44-208ENST00000428726 HTN1P15515 57 aa6.49□□□□□ -1.37
CD44-208ENST00000428726 CTRLP40313 264 aa6.49□□□□□ -1.37
CD44-208ENST00000428726 URB1-AS1Q96HZ7 61 aa6.49□□□□□ -1.37
CD44-208ENST00000428726 MLST8Q9BVC4 326 aa6.49□□□□□ -1.37
CD44-208ENST00000428726 SMAD5-AS1Q9Y6J3 95 aa6.49□□□□□ -1.37
CD44-208ENST00000428726 TRAV30A0A087WSZ9 112 aa6.49□□□□□ -1.37
CD44-208ENST00000428726 RNF223E7ERA6 249 aa6.49□□□□□ -1.37
CD44-208ENST00000428726 SMAD7O15105 426 aaKnown RBP6.49□□□□□ -1.37
CD44-208ENST00000428726 IGLV2-11P01706 119 aa6.49□□□□□ -1.37
CD44-208ENST00000428726 LOXL1Q08397 574 aaPredicted RBP6.49□□□□□ -1.37
CD44-208ENST00000428726 SIGLEC15Q6ZMC9 328 aa6.49□□□□□ -1.37
CD44-208ENST00000428726 Q86TA4 180 aa6.49□□□□□ -1.37
CD44-208ENST00000428726 AMN1Q8IY45 258 aa6.49□□□□□ -1.37
CD44-208ENST00000428726 AJUBAQ96IF1 538 aa6.49□□□□□ -1.37
CD44-208ENST00000428726 ZNF414Q96IQ9 312 aa6.49□□□□□ -1.37
CD44-208ENST00000428726 ALKBH7Q9BT30 221 aaPredicted RBP6.49□□□□□ -1.37
CD44-208ENST00000428726 RPP21Q9H633 154 aaKnown RBP6.49□□□□□ -1.37
CD44-208ENST00000428726 IGLV11-55A0A075B6I3 123 aa6.48□□□□□ -1.37
CD44-208ENST00000428726 M0QZK8 103 aa6.48□□□□□ -1.37
CD44-208ENST00000428726 LTAP01374 205 aa6.48□□□□□ -1.37
CD44-208ENST00000428726 MINOS1Q5TGZ0 78 aa6.48□□□□□ -1.37
CD44-208ENST00000428726 S100A7AQ86SG5 101 aa6.48□□□□□ -1.37
CD44-208ENST00000428726 SHANK2-AS3Q9BTD1 123 aa6.48□□□□□ -1.37
CD44-208ENST00000428726 ZNF492Q9P255 531 aa6.48□□□□□ -1.37
CD44-208ENST00000428726 ZFP30Q9Y2G7 519 aa6.48□□□□□ -1.37
CD44-208ENST00000428726 MINOS1-NBL1R4GNA1 71 aa6.48□□□□□ -1.37
CD44-208ENST00000428726 BTF3P20290 206 aaKnown RBP6.48□□□□□ -1.37
CD44-208ENST00000428726 OR4C5Q8NGB2 326 aa6.48□□□□□ -1.37
CD44-208ENST00000428726 OR8A1Q8NGG7 326 aa6.48□□□□□ -1.37
CD44-208ENST00000428726 C18orf15Q96N68 181 aa6.48□□□□□ -1.37
CD44-208ENST00000428726 TRAV26-2A0A0B4J265 109 aa6.47□□□□□ -1.37
CD44-208ENST00000428726 A8MWL6 223 aa6.47□□□□□ -1.37
CD44-208ENST00000428726 LEPROTL1O95214 131 aa6.47□□□□□ -1.37
CD44-208ENST00000428726 IGHV4-59P01825 116 aa6.47□□□□□ -1.37
CD44-208ENST00000428726 PRM2P04554 102 aa6.47□□□□□ -1.37
CD44-208ENST00000428726 EBI3Q14213 229 aa6.47□□□□□ -1.37
CD44-208ENST00000428726 CT83Q5H943 113 aa6.47□□□□□ -1.37
CD44-208ENST00000428726 KHDC1LQ5JSQ8 128 aa6.47□□□□□ -1.37
CD44-208ENST00000428726 LYZL1Q6UWQ5 148 aa6.47□□□□□ -1.37
CD44-208ENST00000428726 PRSS57Q6UWY2 283 aa6.47□□□□□ -1.37
CD44-208ENST00000428726 ATP5L2Q7Z4Y8 100 aa6.47□□□□□ -1.37
CD44-208ENST00000428726 CCDC140Q96MF4 163 aa6.47□□□□□ -1.37
CD44-208ENST00000428726 AAMDCQ9H7C9 122 aa6.47□□□□□ -1.37
CD44-208ENST00000428726 BEX4Q9NWD9 120 aaPredicted RBP6.47□□□□□ -1.37
CD44-208ENST00000428726 SETXQ7Z333 2677 aaKnown RBP6.47□□□□□ -1.37
CD44-208ENST00000428726 IGHV1-24A0A0C4DH33 117 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms