RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 KIR2DL5BQ8NHK3 375 aa1.81□□□□□ -2.12
VPS13A-208ENST00000423463 PPP1R1CQ8WVI7 109 aa1.81□□□□□ -2.12
VPS13A-208ENST00000423463 ASB13Q8WXK3 278 aa1.81□□□□□ -2.12
VPS13A-208ENST00000423463 PPP1R14BQ96C90 147 aa1.81□□□□□ -2.12
VPS13A-208ENST00000423463 GPR82Q96P67 336 aa1.81□□□□□ -2.12
VPS13A-208ENST00000423463 TM2D3Q9BRN9 247 aa1.81□□□□□ -2.12
VPS13A-208ENST00000423463 PYGO2Q9BRQ0 406 aa1.81□□□□□ -2.12
VPS13A-208ENST00000423463 RNF126Q9BV68 326 aa1.81□□□□□ -2.12
VPS13A-208ENST00000423463 PBDC1Q9BVG4 233 aa1.81□□□□□ -2.12
VPS13A-208ENST00000423463 TMEM147Q9BVK8 224 aa1.81□□□□□ -2.12
VPS13A-208ENST00000423463 GGTLC1Q9BX51 225 aa1.81□□□□□ -2.12
VPS13A-208ENST00000423463 MS4A6AQ9H2W1 248 aa1.81□□□□□ -2.12
VPS13A-208ENST00000423463 UQCC1Q9NVA1 299 aa1.81□□□□□ -2.12
VPS13A-208ENST00000423463 U3KQK5 164 aa1.81□□□□□ -2.12
VPS13A-208ENST00000423463 VWFP04275 2813 aa1.81□□□□□ -2.12
VPS13A-208ENST00000423463 PKD1L1Q8TDX9 2849 aa1.81□□□□□ -2.12
VPS13A-208ENST00000423463 ANK2Q01484 3957 aa1.8□□□□□ -2.12
VPS13A-208ENST00000423463 IGKV3-7A0A075B6H7 116 aa1.8□□□□□ -2.12
VPS13A-208ENST00000423463 ZNF98A6NK75 572 aa1.8□□□□□ -2.12
VPS13A-208ENST00000423463 AGPAT2O15120 278 aa1.8□□□□□ -2.12
VPS13A-208ENST00000423463 ATP6V1G1O75348 118 aa1.8□□□□□ -2.12
VPS13A-208ENST00000423463 OR5G3P0C626 314 aa1.8□□□□□ -2.12
VPS13A-208ENST00000423463 LINC00869P0C866 280 aa1.8□□□□□ -2.12
VPS13A-208ENST00000423463 GATA1P15976 413 aaPredicted RBP1.8□□□□□ -2.12
VPS13A-208ENST00000423463 ORM2P19652 201 aa1.8□□□□□ -2.12
VPS13A-208ENST00000423463 GATA2P23769 480 aaPredicted RBP1.8□□□□□ -2.12
VPS13A-208ENST00000423463 ID1P41134 155 aa1.8□□□□□ -2.12
VPS13A-208ENST00000423463 GALR1P47211 349 aa1.8□□□□□ -2.12
VPS13A-208ENST00000423463 RPL29P47914 159 aaKnown RBP1.8□□□□□ -2.12
VPS13A-208ENST00000423463 TFPI2P48307 235 aa1.8□□□□□ -2.12
VPS13A-208ENST00000423463 CAMLGP49069 296 aa1.8□□□□□ -2.12
VPS13A-208ENST00000423463 MEOX2P50222 304 aa1.8□□□□□ -2.12
VPS13A-208ENST00000423463 APOC4P55056 127 aa1.8□□□□□ -2.12
VPS13A-208ENST00000423463 SSTP61278 116 aa1.8□□□□□ -2.12
VPS13A-208ENST00000423463 HERV-K104P63124 156 aa1.8□□□□□ -2.12
VPS13A-208ENST00000423463 EWSR1Q01844 656 aaKnown RBP eCLIP1.8□□□□□ -2.12
VPS13A-208ENST00000423463 BAXQ07812 192 aa1.8□□□□□ -2.12
VPS13A-208ENST00000423463 CD300CQ08708 224 aa1.8□□□□□ -2.12
VPS13A-208ENST00000423463 Q6ZRG5 221 aa1.8□□□□□ -2.12
VPS13A-208ENST00000423463 OR8I2Q8N0Y5 310 aa1.8□□□□□ -2.12
VPS13A-208ENST00000423463 STXBP6Q8NFX7 210 aa1.8□□□□□ -2.12
VPS13A-208ENST00000423463 OR1B1Q8NGR6 318 aa1.8□□□□□ -2.12
VPS13A-208ENST00000423463 DCANP1Q8TF63 244 aa1.8□□□□□ -2.12
VPS13A-208ENST00000423463 MRPL53Q96EL3 112 aaKnown RBP1.8□□□□□ -2.12
VPS13A-208ENST00000423463 SHANK2-AS3Q9BTD1 123 aa1.8□□□□□ -2.12
VPS13A-208ENST00000423463 NRN1Q9NPD7 142 aa1.8□□□□□ -2.12
VPS13A-208ENST00000423463 OR5AC2Q9NZP5 309 aa1.8□□□□□ -2.12
VPS13A-208ENST00000423463 HIGD1AQ9Y241 93 aa1.8□□□□□ -2.12
VPS13A-208ENST00000423463 H3BRN7 92 aa1.8□□□□□ -2.12
VPS13A-208ENST00000423463 GIPP09681 153 aaPredicted RBP1.8□□□□□ -2.12
VPS13A-208ENST00000423463 RPL7P18124 248 aaKnown RBP1.8□□□□□ -2.12
VPS13A-208ENST00000423463 CXCL3P19876 107 aa1.8□□□□□ -2.12
VPS13A-208ENST00000423463 RPL12P30050 165 aaKnown RBP1.8□□□□□ -2.12
VPS13A-208ENST00000423463 DEFB131AP59861 70 aa1.8□□□□□ -2.12
VPS13A-208ENST00000423463 SNRPD3P62318 126 aaKnown RBP1.8□□□□□ -2.12
VPS13A-208ENST00000423463 FGL1Q08830 312 aa1.8□□□□□ -2.12
VPS13A-208ENST00000423463 SPATA31B1PQ5VZV4 182 aa1.8□□□□□ -2.12
VPS13A-208ENST00000423463 MORN3Q6PF18 240 aaPredicted RBP1.8□□□□□ -2.12
VPS13A-208ENST00000423463 PATE2Q6UY27 113 aa1.8□□□□□ -2.12
VPS13A-208ENST00000423463 OR11H7Q8NGC8 314 aa1.8□□□□□ -2.12
VPS13A-208ENST00000423463 OR5C1Q8NGR4 320 aa1.8□□□□□ -2.12
VPS13A-208ENST00000423463 OR1L4Q8NGR5 311 aa1.8□□□□□ -2.12
VPS13A-208ENST00000423463 RCHY1Q96PM5 261 aa1.8□□□□□ -2.12
VPS13A-208ENST00000423463 MGST2Q99735 147 aa1.8□□□□□ -2.12
VPS13A-208ENST00000423463 RSG1Q9BU20 258 aa1.8□□□□□ -2.12
VPS13A-208ENST00000423463 SLC25A39Q9BZJ4 359 aaPredicted RBP1.8□□□□□ -2.12
VPS13A-208ENST00000423463 ARL6Q9H0F7 186 aa1.8□□□□□ -2.12
VPS13A-208ENST00000423463 KCNIP2Q9NS61 270 aa1.8□□□□□ -2.12
VPS13A-208ENST00000423463 SLC39A9Q9NUM3 307 aa1.8□□□□□ -2.12
VPS13A-208ENST00000423463 TP53TG1Q9Y2A0 90 aa1.8□□□□□ -2.12
VPS13A-208ENST00000423463 HSPB11Q9Y547 144 aa1.8□□□□□ -2.12
VPS13A-208ENST00000423463 ISLRO14498 428 aa1.79□□□□□ -2.12
VPS13A-208ENST00000423463 COX7A2P2O60397 106 aa1.79□□□□□ -2.12
VPS13A-208ENST00000423463 IFNA5P01569 189 aa1.79□□□□□ -2.12
VPS13A-208ENST00000423463 ZNF688P0C7X2 276 aa1.79□□□□□ -2.12
VPS13A-208ENST00000423463 FGF7P21781 194 aa1.79□□□□□ -2.12
VPS13A-208ENST00000423463 PSMB3P49720 205 aa1.79□□□□□ -2.12
VPS13A-208ENST00000423463 TMEM41BQ5BJD5 291 aa1.79□□□□□ -2.12
VPS13A-208ENST00000423463 C10orf113Q5VZT2 155 aa1.79□□□□□ -2.12
VPS13A-208ENST00000423463 MIC13Q5XKP0 118 aa1.79□□□□□ -2.12
VPS13A-208ENST00000423463 APRG1Q8IVJ8 170 aa1.79□□□□□ -2.12
VPS13A-208ENST00000423463 Q8N377 158 aa1.79□□□□□ -2.12
VPS13A-208ENST00000423463 FAM24BQ8N5W8 94 aa1.79□□□□□ -2.12
VPS13A-208ENST00000423463 ZNF709Q8N972 641 aa1.79□□□□□ -2.12
VPS13A-208ENST00000423463 SCGB1C1Q8TD33 95 aa1.79□□□□□ -2.12
VPS13A-208ENST00000423463 TMEM37Q8WXS4 190 aa1.79□□□□□ -2.12
VPS13A-208ENST00000423463 PFDN5Q99471 154 aa1.79□□□□□ -2.12
VPS13A-208ENST00000423463 ATP5SQ99766 215 aa1.79□□□□□ -2.12
VPS13A-208ENST00000423463 PARD6GQ9BYG4 376 aaPredicted RBP1.79□□□□□ -2.12
VPS13A-208ENST00000423463 WDR61Q9GZS3 305 aaKnown RBP1.79□□□□□ -2.12
VPS13A-208ENST00000423463 WFDC10AQ9H1F0 79 aa1.79□□□□□ -2.12
VPS13A-208ENST00000423463 ARV1Q9H2C2 271 aa1.79□□□□□ -2.12
VPS13A-208ENST00000423463 CLEC5AQ9NY25 188 aa1.79□□□□□ -2.12
VPS13A-208ENST00000423463 DOK5Q9P104 306 aa1.79□□□□□ -2.12
VPS13A-208ENST00000423463 MBD2Q9UBB5 411 aa1.79□□□□□ -2.12
VPS13A-208ENST00000423463 UBE2L5PA0A1B0GUS4 154 aa1.79□□□□□ -2.12
VPS13A-208ENST00000423463 C17orf112F2Z3M2 114 aa1.79□□□□□ -2.12
VPS13A-208ENST00000423463 CXCL2P19875 107 aa1.79□□□□□ -2.12
VPS13A-208ENST00000423463 B2MP61769 119 aa1.79□□□□□ -2.12
VPS13A-208ENST00000423463 NUTF2P61970 127 aaKnown RBP1.79□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 124.1 ms