RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 ODF3BA8MYP8 253 aa10.41□□□□□ -0.74
VPS54-203ENST00000409558 UQCR10Q9UDW1 63 aa10.41□□□□□ -0.74
VPS54-203ENST00000409558 IGHV4-39P01824 125 aa10.4□□□□□ -0.74
VPS54-203ENST00000409558 Q6ZS46 218 aa10.4□□□□□ -0.74
VPS54-203ENST00000409558 WIPF2Q8TF74 440 aaPredicted RBP10.4□□□□□ -0.74
VPS54-203ENST00000409558 SMAD5-AS1Q9Y6J3 95 aa10.4□□□□□ -0.74
VPS54-203ENST00000409558 CBY3A6NI87 242 aa10.4□□□□□ -0.74
VPS54-203ENST00000409558 NPFFO15130 113 aa10.4□□□□□ -0.74
VPS54-203ENST00000409558 TCF21O43680 179 aa10.4□□□□□ -0.74
VPS54-203ENST00000409558 NDUFA3O95167 84 aa10.4□□□□□ -0.74
VPS54-203ENST00000409558 PLP1P60201 277 aa10.4□□□□□ -0.74
VPS54-203ENST00000409558 BLCAPP62952 87 aa10.4□□□□□ -0.74
VPS54-203ENST00000409558 ITLN2Q8WWU7 325 aaPredicted RBP10.4□□□□□ -0.74
VPS54-203ENST00000409558 LAMTOR2Q9Y2Q5 125 aa10.4□□□□□ -0.74
VPS54-203ENST00000409558 TRAV26-2A0A0B4J265 109 aa10.4□□□□□ -0.74
VPS54-203ENST00000409558 IGHV2-70DA0A0C4DH43 119 aa10.4□□□□□ -0.74
VPS54-203ENST00000409558 HSBP1L1C9JCN9 74 aa10.4□□□□□ -0.74
VPS54-203ENST00000409558 F6UB75 175 aa10.39□□□□□ -0.75
VPS54-203ENST00000409558 IGF1P05019 195 aa10.39□□□□□ -0.75
VPS54-203ENST00000409558 DNLZQ5SXM8 178 aa10.39□□□□□ -0.75
VPS54-203ENST00000409558 NPBQ8NG41 125 aa10.39□□□□□ -0.75
VPS54-203ENST00000409558 KLK15Q9H2R5 256 aa10.39□□□□□ -0.75
VPS54-203ENST00000409558 CENPVL3A0A0U1RRI6 287 aa10.39□□□□□ -0.75
VPS54-203ENST00000409558 TM4SF20Q53R12 229 aa10.39□□□□□ -0.75
VPS54-203ENST00000409558 PRELID3AQ96N28 172 aa10.39□□□□□ -0.75
VPS54-203ENST00000409558 C20orf144Q9BQM9 153 aa10.39□□□□□ -0.75
VPS54-203ENST00000409558 NAA38Q9BRA0 125 aaKnown RBP10.39□□□□□ -0.75
VPS54-203ENST00000409558 C2orf70A6NJV1 201 aa10.39□□□□□ -0.75
VPS54-203ENST00000409558 GOSR1O95249 250 aa10.39□□□□□ -0.75
VPS54-203ENST00000409558 ESDP10768 282 aa10.39□□□□□ -0.75
VPS54-203ENST00000409558 FAM162BQ5T6X4 162 aa10.39□□□□□ -0.75
VPS54-203ENST00000409558 TMEM208Q9BTX3 173 aa10.39□□□□□ -0.75
VPS54-203ENST00000409558 MAP1LC3CQ9BXW4 147 aa10.39□□□□□ -0.75
VPS54-203ENST00000409558 SIRPDQ9H106 197 aa10.39□□□□□ -0.75
VPS54-203ENST00000409558 TRAV30A0A087WSZ9 112 aa10.39□□□□□ -0.75
VPS54-203ENST00000409558 H3BUX3 64 aa10.39□□□□□ -0.75
VPS54-203ENST00000409558 LMO4P61968 165 aa10.39□□□□□ -0.75
VPS54-203ENST00000409558 C16orf92Q96LL3 132 aa10.39□□□□□ -0.75
VPS54-203ENST00000409558 PRR25Q96S07 402 aa10.39□□□□□ -0.75
VPS54-203ENST00000409558 JMJD1CQ15652 2540 aa10.38□□□□□ -0.75
VPS54-203ENST00000409558 SYS1-DBNDD2H3BUS1 97 aa10.38□□□□□ -0.75
VPS54-203ENST00000409558 KLHDC1Q8N7A1 406 aa10.38□□□□□ -0.75
VPS54-203ENST00000409558 RNF5Q99942 180 aa10.38□□□□□ -0.75
VPS54-203ENST00000409558 A0A087X0K7 114 aa10.38□□□□□ -0.75
VPS54-203ENST00000409558 PRSS57Q6UWY2 283 aa10.38□□□□□ -0.75
VPS54-203ENST00000409558 FER1L6-AS1Q8NA97 138 aa10.38□□□□□ -0.75
VPS54-203ENST00000409558 TMEM14CQ9P0S9 112 aa10.38□□□□□ -0.75
VPS54-203ENST00000409558 PRRC2AP48634 2157 aaKnown RBP10.38□□□□□ -0.75
VPS54-203ENST00000409558 WI2-2373I1.2A0A1W2PRP0 233 aa10.38□□□□□ -0.75
VPS54-203ENST00000409558 CCL19Q99731 98 aa10.38□□□□□ -0.75
VPS54-203ENST00000409558 ZFP30Q9Y2G7 519 aa10.38□□□□□ -0.75
VPS54-203ENST00000409558 MPV17L2Q567V2 206 aa10.37□□□□□ -0.75
VPS54-203ENST00000409558 ATP5L2Q7Z4Y8 100 aa10.37□□□□□ -0.75
VPS54-203ENST00000409558 TTC9CQ8N5M4 171 aa10.37□□□□□ -0.75
VPS54-203ENST00000409558 TRAV9-2A0A087WT02 112 aa10.37□□□□□ -0.75
VPS54-203ENST00000409558 NUDT3O95989 172 aa10.37□□□□□ -0.75
VPS54-203ENST00000409558 TSPOP30536 169 aa10.37□□□□□ -0.75
VPS54-203ENST00000409558 NDFIP1Q9BT67 221 aa10.37□□□□□ -0.75
VPS54-203ENST00000409558 FOXE3Q13461 319 aa10.37□□□□□ -0.75
VPS54-203ENST00000409558 C20orf202A1L168 122 aa10.37□□□□□ -0.75
VPS54-203ENST00000409558 UNQ9165/PRO28630Q6UXU0 137 aa10.37□□□□□ -0.75
VPS54-203ENST00000409558 ZNF738Q8NE65 137 aa10.37□□□□□ -0.75
VPS54-203ENST00000409558 CCDC140Q96MF4 163 aa10.37□□□□□ -0.75
VPS54-203ENST00000409558 FBN2P35556 2912 aa10.36□□□□□ -0.75
VPS54-203ENST00000409558 IGHV4-30-2A0A087WSY4 118 aa10.36□□□□□ -0.75
VPS54-203ENST00000409558 EDN2P20800 178 aa10.36□□□□□ -0.75
VPS54-203ENST00000409558 UBE2E1P51965 193 aa10.36□□□□□ -0.75
VPS54-203ENST00000409558 ZNF492Q9P255 531 aa10.36□□□□□ -0.75
VPS54-203ENST00000409558 TEX15Q9BXT5 2789 aa10.36□□□□□ -0.75
VPS54-203ENST00000409558 M0R381 172 aa10.36□□□□□ -0.75
VPS54-203ENST00000409558 SCGB2A1O75556 95 aa10.36□□□□□ -0.75
VPS54-203ENST00000409558 NPYP01303 97 aa10.36□□□□□ -0.75
VPS54-203ENST00000409558 KIR3DS1Q14943 382 aa10.36□□□□□ -0.75
VPS54-203ENST00000409558 AGRNO00468 2067 aa10.36□□□□□ -0.75
VPS54-203ENST00000409558 CACNG7P62955 275 aa10.36□□□□□ -0.75
VPS54-203ENST00000409558 ATP5G2Q06055 141 aa10.36□□□□□ -0.75
VPS54-203ENST00000409558 MRPS12O15235 138 aaKnown RBP10.35□□□□□ -0.75
VPS54-203ENST00000409558 NMUP48645 174 aa10.35□□□□□ -0.75
VPS54-203ENST00000409558 COL5A1-AS1Q5SY13 56 aa10.35□□□□□ -0.75
VPS54-203ENST00000409558 METTL26Q96S19 204 aa10.35□□□□□ -0.75
VPS54-203ENST00000409558 GOLT1BQ9Y3E0 138 aa10.35□□□□□ -0.75
VPS54-203ENST00000409558 HTN1P15515 57 aa10.35□□□□□ -0.75
VPS54-203ENST00000409558 DTX2Q86UW9 622 aa10.35□□□□□ -0.75
VPS54-203ENST00000409558 PSG9Q00887 426 aa10.35□□□□□ -0.75
VPS54-203ENST00000409558 MRPL51Q4U2R6 128 aaKnown RBP10.35□□□□□ -0.75
VPS54-203ENST00000409558 C10orf99Q6UWK7 81 aa10.35□□□□□ -0.75
VPS54-203ENST00000409558 NF1P21359 2839 aa10.35□□□□□ -0.75
VPS54-203ENST00000409558 TTTY13Q9BZ97 58 aa10.34□□□□□ -0.75
VPS54-203ENST00000409558 TMEM191AQ9H0A3 160 aa10.34□□□□□ -0.75
VPS54-203ENST00000409558 SIGLEC8Q9NYZ4 499 aa10.34□□□□□ -0.75
VPS54-203ENST00000409558 RNF24Q9Y225 148 aa10.34□□□□□ -0.75
VPS54-203ENST00000409558 CTRLP40313 264 aa10.34□□□□□ -0.75
VPS54-203ENST00000409558 TMEM78Q5T7P6 136 aa10.34□□□□□ -0.75
VPS54-203ENST00000409558 TRAV41A0A0B4J266 112 aa10.34□□□□□ -0.75
VPS54-203ENST00000409558 ARL3P36405 182 aa10.34□□□□□ -0.75
VPS54-203ENST00000409558 VAMP3Q15836 100 aa10.34□□□□□ -0.75
VPS54-203ENST00000409558 S100A7AQ86SG5 101 aa10.34□□□□□ -0.75
VPS54-203ENST00000409558 AGPAT4-IT1Q9H0P7 198 aa10.34□□□□□ -0.75
VPS54-203ENST00000409558 H3BVH4 76 aa10.34□□□□□ -0.75
VPS54-203ENST00000409558 HAX1O00165 279 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 82.2 ms