RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 CEND1Q8N111 149 aa4.31□□□□□ -1.72
CLK1-202ENST00000409403 SMIM20Q8N5G0 67 aa4.31□□□□□ -1.72
CLK1-202ENST00000409403 GATD1Q8NB37 220 aa4.31□□□□□ -1.72
CLK1-202ENST00000409403 DLX4Q92988 240 aaPredicted RBP4.31□□□□□ -1.72
CLK1-202ENST00000409403 TSACCQ96A04 125 aaPredicted RBP4.31□□□□□ -1.72
CLK1-202ENST00000409403 ZC2HC1AQ96GY0 325 aa4.31□□□□□ -1.72
CLK1-202ENST00000409403 COQ2Q96H96 371 aa4.31□□□□□ -1.72
CLK1-202ENST00000409403 DEPPQ9NTK1 212 aa4.31□□□□□ -1.72
CLK1-202ENST00000409403 AMMECR1Q9Y4X0 333 aaPredicted RBP4.31□□□□□ -1.72
CLK1-202ENST00000409403 INSIG2Q9Y5U4 225 aa4.31□□□□□ -1.72
CLK1-202ENST00000409403 VPS13CQ709C8 3753 aa4.31□□□□□ -1.72
CLK1-202ENST00000409403 TRAV24A0A0B4J272 114 aa4.3□□□□□ -1.72
CLK1-202ENST00000409403 LILRA5A6NI73 299 aa4.3□□□□□ -1.72
CLK1-202ENST00000409403 FABP5P3A8MUU1 101 aa4.3□□□□□ -1.72
CLK1-202ENST00000409403 SNAI2O43623 268 aa4.3□□□□□ -1.72
CLK1-202ENST00000409403 FCN3O75636 299 aa4.3□□□□□ -1.72
CLK1-202ENST00000409403 HBDP02042 147 aa4.3□□□□□ -1.72
CLK1-202ENST00000409403 APOHP02749 345 aaPredicted RBP4.3□□□□□ -1.72
CLK1-202ENST00000409403 MPV17P39210 176 aa4.3□□□□□ -1.72
CLK1-202ENST00000409403 NMUP48645 174 aa4.3□□□□□ -1.72
CLK1-202ENST00000409403 FOXA3P55318 350 aaPredicted RBP4.3□□□□□ -1.72
CLK1-202ENST00000409403 BRWD1-AS2P59051 145 aa4.3□□□□□ -1.72
CLK1-202ENST00000409403 GNG3P63215 75 aa4.3□□□□□ -1.72
CLK1-202ENST00000409403 UBE2L3P68036 154 aaKnown RBP4.3□□□□□ -1.72
CLK1-202ENST00000409403 EIF4EBP1Q13541 118 aaPredicted RBP4.3□□□□□ -1.72
CLK1-202ENST00000409403 OR1C1Q15619 314 aa4.3□□□□□ -1.72
CLK1-202ENST00000409403 POU2AF1Q16633 256 aa4.3□□□□□ -1.72
CLK1-202ENST00000409403 RRN3P1Q2M238 152 aa4.3□□□□□ -1.72
CLK1-202ENST00000409403 OR1L4Q8NGR5 311 aa4.3□□□□□ -1.72
CLK1-202ENST00000409403 SLC37A2Q8TED4 501 aa4.3□□□□□ -1.72
CLK1-202ENST00000409403 PHLDA1Q8WV24 401 aaPredicted RBP4.3□□□□□ -1.72
CLK1-202ENST00000409403 SSMEM1Q8WWF3 244 aa4.3□□□□□ -1.72
CLK1-202ENST00000409403 FMC1Q96HJ9 113 aa4.3□□□□□ -1.72
CLK1-202ENST00000409403 NABP2Q9BQ15 211 aa4.3□□□□□ -1.72
CLK1-202ENST00000409403 OR2H1Q9GZK4 316 aa4.3□□□□□ -1.72
CLK1-202ENST00000409403 CXXC4Q9H2H0 198 aa4.3□□□□□ -1.72
CLK1-202ENST00000409403 NHP2Q9NX24 153 aaKnown RBP4.3□□□□□ -1.72
CLK1-202ENST00000409403 PRO0461Q9UI25 63 aa4.3□□□□□ -1.72
CLK1-202ENST00000409403 POLDIP2Q9Y2S7 368 aa4.3□□□□□ -1.72
CLK1-202ENST00000409403 MPC1Q9Y5U8 109 aa4.3□□□□□ -1.72
CLK1-202ENST00000409403 ALPK2Q86TB3 2170 aa4.3□□□□□ -1.72
CLK1-202ENST00000409403 PCLOQ9Y6V0 5065 aa4.3□□□□□ -1.72
CLK1-202ENST00000409403 TMEM30CPA0ZSE6 113 aa4.29□□□□□ -1.72
CLK1-202ENST00000409403 J3QT63 122 aa4.29□□□□□ -1.72
CLK1-202ENST00000409403 FOXH1O75593 365 aa4.29□□□□□ -1.72
CLK1-202ENST00000409403 SNCGO76070 127 aa4.29□□□□□ -1.72
CLK1-202ENST00000409403 MT-ATP8P03928 68 aa4.29□□□□□ -1.72
CLK1-202ENST00000409403 LIFP15018 202 aa4.29□□□□□ -1.72
CLK1-202ENST00000409403 MYOD1P15172 320 aa4.29□□□□□ -1.72
CLK1-202ENST00000409403 DUTP33316 252 aaKnown RBP4.29□□□□□ -1.72
CLK1-202ENST00000409403 LINC00205P59089 165 aa4.29□□□□□ -1.72
CLK1-202ENST00000409403 ATP5G2Q06055 141 aa4.29□□□□□ -1.72
CLK1-202ENST00000409403 DEFB109BQ30KR1 87 aa4.29□□□□□ -1.72
CLK1-202ENST00000409403 TTC32Q5I0X7 151 aa4.29□□□□□ -1.72
CLK1-202ENST00000409403 ATP1A1-AS1Q5TC04 95 aa4.29□□□□□ -1.72
CLK1-202ENST00000409403 SLC25A48Q6ZT89 311 aaKnown RBP4.29□□□□□ -1.72
CLK1-202ENST00000409403 Q75L30 129 aa4.29□□□□□ -1.72
CLK1-202ENST00000409403 MIR17HGQ75NE6 70 aa4.29□□□□□ -1.72
CLK1-202ENST00000409403 SH2D6Q7Z4S9 175 aa4.29□□□□□ -1.72
CLK1-202ENST00000409403 OR8A1Q8NGG7 326 aa4.29□□□□□ -1.72
CLK1-202ENST00000409403 CCL4L1Q8NHW4 92 aa4.29□□□□□ -1.72
CLK1-202ENST00000409403 NRGNQ92686 78 aa4.29□□□□□ -1.72
CLK1-202ENST00000409403 PRELID3AQ96N28 172 aa4.29□□□□□ -1.72
CLK1-202ENST00000409403 U3KQA8 63 aa4.29□□□□□ -1.72
CLK1-202ENST00000409403 LRP4O75096 1905 aa4.29□□□□□ -1.72
CLK1-202ENST00000409403 SVEP1Q4LDE5 3571 aa4.29□□□□□ -1.72
CLK1-202ENST00000409403 OOEPA6NGQ2 149 aa4.29□□□□□ -1.72
CLK1-202ENST00000409403 M0QXV9 152 aa4.29□□□□□ -1.72
CLK1-202ENST00000409403 SLC25A5P05141 298 aaKnown RBP4.29□□□□□ -1.72
CLK1-202ENST00000409403 ZNF688P0C7X2 276 aa4.29□□□□□ -1.72
CLK1-202ENST00000409403 IFITM1P13164 125 aa4.29□□□□□ -1.72
CLK1-202ENST00000409403 ZNF32P17041 273 aa4.29□□□□□ -1.72
CLK1-202ENST00000409403 TNFRSF4P43489 277 aa4.29□□□□□ -1.72
CLK1-202ENST00000409403 FXYD2P54710 66 aa4.29□□□□□ -1.72
CLK1-202ENST00000409403 NDUFV3P56181 108 aaKnown RBP4.29□□□□□ -1.72
CLK1-202ENST00000409403 CACNG7P62955 275 aa4.29□□□□□ -1.72
CLK1-202ENST00000409403 TEN1Q86WV5 123 aa4.29□□□□□ -1.72
CLK1-202ENST00000409403 RBMXL3Q8N7X1 1067 aaKnown RBP4.29□□□□□ -1.72
CLK1-202ENST00000409403 IFI27L1Q96BM0 104 aa4.29□□□□□ -1.72
CLK1-202ENST00000409403 ZNF714Q96N38 554 aa4.29□□□□□ -1.72
CLK1-202ENST00000409403 C20orf78Q9BR46 151 aa4.29□□□□□ -1.72
CLK1-202ENST00000409403 B4GALT7Q9UBV7 327 aa4.29□□□□□ -1.72
CLK1-202ENST00000409403 KLF12Q9Y4X4 402 aa4.29□□□□□ -1.72
CLK1-202ENST00000409403 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.28□□□□□ -1.724e-7■■■■□ 22.2
CLK1-202ENST00000409403 FER1L5A0AVI2 2057 aa4.28□□□□□ -1.72
CLK1-202ENST00000409403 MYO7BQ6PIF6 2116 aa4.28□□□□□ -1.72
CLK1-202ENST00000409403 TRBV20-1A0A075B6N2 111 aa4.28□□□□□ -1.72
CLK1-202ENST00000409403 TRAV5A0A0B4J249 113 aa4.28□□□□□ -1.72
CLK1-202ENST00000409403 A0A1B0GUT8 65 aa4.28□□□□□ -1.72
CLK1-202ENST00000409403 TMEM213A2RRL7 107 aa4.28□□□□□ -1.72
CLK1-202ENST00000409403 C17orf98A8MV24 154 aa4.28□□□□□ -1.72
CLK1-202ENST00000409403 TMEM178BH3BS89 294 aa4.28□□□□□ -1.72
CLK1-202ENST00000409403 EFNA2O43921 213 aa4.28□□□□□ -1.72
CLK1-202ENST00000409403 ATP5LO75964 103 aa4.28□□□□□ -1.72
CLK1-202ENST00000409403 LY6G6DO95868 133 aa4.28□□□□□ -1.72
CLK1-202ENST00000409403 IL4P05112 153 aa4.28□□□□□ -1.72
CLK1-202ENST00000409403 SP1P08047 785 aa4.28□□□□□ -1.72
CLK1-202ENST00000409403 EVI2AP22794 236 aa4.28□□□□□ -1.72
CLK1-202ENST00000409403 CA6P23280 308 aa4.28□□□□□ -1.72
CLK1-202ENST00000409403 CD27P26842 260 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms