RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 TRBV19A0A075B6N1 114 aa10.27□□□□□ -0.77
CCDC88C-204ENST00000389857 RSPO3Q9BXY4 272 aaPredicted RBP10.27□□□□□ -0.77
CCDC88C-204ENST00000389857 REG4Q9BYZ8 158 aa10.27□□□□□ -0.77
CCDC88C-204ENST00000389857 ABCA4P78363 2273 aa10.27□□□□□ -0.77
CCDC88C-204ENST00000389857 hADV29S1A0JD25 119 aa10.27□□□□□ -0.77
CCDC88C-204ENST00000389857 ZDBF2Q9HCK1 2354 aa10.27□□□□□ -0.77
CCDC88C-204ENST00000389857 IGHV1-24A0A0C4DH33 117 aa10.27□□□□□ -0.77
CCDC88C-204ENST00000389857 LINC00205P59089 165 aa10.27□□□□□ -0.77
CCDC88C-204ENST00000389857 MLANAQ16655 118 aa10.27□□□□□ -0.77
CCDC88C-204ENST00000389857 SDHAF1A6NFY7 115 aa10.26□□□□□ -0.77
CCDC88C-204ENST00000389857 F8W1H4 67 aa10.26□□□□□ -0.77
CCDC88C-204ENST00000389857 LINC00479Q96M42 142 aa10.26□□□□□ -0.77
CCDC88C-204ENST00000389857 SMIM2Q9BVW6 85 aa10.26□□□□□ -0.77
CCDC88C-204ENST00000389857 C9orf118A6NHY6 69 aa10.26□□□□□ -0.77
CCDC88C-204ENST00000389857 PLXNA3P51805 1871 aa10.26□□□□□ -0.77
CCDC88C-204ENST00000389857 TMEM14CQ9P0S9 112 aa10.26□□□□□ -0.77
CCDC88C-204ENST00000389857 DOCK9Q9BZ29 2069 aa10.26□□□□□ -0.77
CCDC88C-204ENST00000389857 TICRRQ7Z2Z1 1910 aa10.26□□□□□ -0.77
CCDC88C-204ENST00000389857 FGF6P10767 208 aa10.26□□□□□ -0.77
CCDC88C-204ENST00000389857 ALPK2Q86TB3 2170 aa10.26□□□□□ -0.77
CCDC88C-204ENST00000389857 MRPL51Q4U2R6 128 aaKnown RBP10.26□□□□□ -0.77
CCDC88C-204ENST00000389857 ANGP03950 147 aaKnown RBP10.25□□□□□ -0.77
CCDC88C-204ENST00000389857 IFITM1P13164 125 aa10.25□□□□□ -0.77
CCDC88C-204ENST00000389857 A0A0G2JRQ6 117 aa10.25□□□□□ -0.77
CCDC88C-204ENST00000389857 C5orf63A6NC05 138 aa10.25□□□□□ -0.77
CCDC88C-204ENST00000389857 NXPH4O95158 308 aa10.25□□□□□ -0.77
CCDC88C-204ENST00000389857 NDUFA12Q9UI09 145 aa10.25□□□□□ -0.77
CCDC88C-204ENST00000389857 H3BRN7 92 aa10.25□□□□□ -0.77
CCDC88C-204ENST00000389857 IGF2BP2-AS1Q96M15 143 aa10.25□□□□□ -0.77
CCDC88C-204ENST00000389857 ANXA2RQ3ZCQ2 193 aa10.25□□□□□ -0.77
CCDC88C-204ENST00000389857 ZNF664Q8N3J9 261 aa10.25□□□□□ -0.77
CCDC88C-204ENST00000389857 NCOR1P1Q9H4R4 102 aa10.25□□□□□ -0.77
CCDC88C-204ENST00000389857 MORN5Q5VZ52 161 aa10.24□□□□□ -0.77
CCDC88C-204ENST00000389857 BOD1L2Q8IYS8 172 aa10.24□□□□□ -0.77
CCDC88C-204ENST00000389857 C5orf24Q7Z6I8 188 aa10.24□□□□□ -0.77
CCDC88C-204ENST00000389857 C18orf32Q8TCD1 76 aa10.24□□□□□ -0.77
CCDC88C-204ENST00000389857 FNDC1Q4ZHG4 1894 aaPredicted RBP10.24□□□□□ -0.77
CCDC88C-204ENST00000389857 IGHV3-38A0A0C4DH36 116 aa10.24□□□□□ -0.77
CCDC88C-204ENST00000389857 K7ENP7 123 aa10.24□□□□□ -0.77
CCDC88C-204ENST00000389857 SIP14410 1827 aa10.24□□□□□ -0.77
CCDC88C-204ENST00000389857 UBE2BP63146 152 aa10.24□□□□□ -0.77
CCDC88C-204ENST00000389857 CEND1Q8N111 149 aa10.24□□□□□ -0.77
CCDC88C-204ENST00000389857 TRAV12-2A0A075B6T6 113 aa10.24□□□□□ -0.77
CCDC88C-204ENST00000389857 TSC2P49815 1807 aa10.24□□□□□ -0.77
CCDC88C-204ENST00000389857 MYLKQ15746 1914 aa10.23□□□□□ -0.77
CCDC88C-204ENST00000389857 SMIM27A0A1W2PRY6 76 aa10.23□□□□□ -0.77
CCDC88C-204ENST00000389857 PRO1854Q9UHT4 67 aa10.23□□□□□ -0.77
CCDC88C-204ENST00000389857 LTBP1Q14766 1721 aa10.23□□□□□ -0.77
CCDC88C-204ENST00000389857 TRAV26-2A0A0B4J265 109 aa10.23□□□□□ -0.77
CCDC88C-204ENST00000389857 PYY3Q5JQD4 70 aa10.23□□□□□ -0.77
CCDC88C-204ENST00000389857 LGALS9BQ3B8N2 356 aa10.23□□□□□ -0.77
CCDC88C-204ENST00000389857 LGALS9CQ6DKI2 356 aa10.23□□□□□ -0.77
CCDC88C-204ENST00000389857 LMO1P25800 156 aa10.23□□□□□ -0.77
CCDC88C-204ENST00000389857 SDK2Q58EX2 2172 aa10.23□□□□□ -0.77
CCDC88C-204ENST00000389857 Q6ZRM9 215 aa10.22□□□□□ -0.77
CCDC88C-204ENST00000389857 PRR25Q96S07 402 aa10.22□□□□□ -0.77
CCDC88C-204ENST00000389857 SPANXCQ9NY87 97 aa10.22□□□□□ -0.77
CCDC88C-204ENST00000389857 FAM186AA6NE01 2351 aa10.22□□□□□ -0.77
CCDC88C-204ENST00000389857 G3V318 75 aa10.22□□□□□ -0.77
CCDC88C-204ENST00000389857 POLR3KQ9Y2Y1 108 aaPredicted RBP10.22□□□□□ -0.77
CCDC88C-204ENST00000389857 RHOHQ15669 191 aa10.22□□□□□ -0.77
CCDC88C-204ENST00000389857 CR1LQ2VPA4 569 aa10.22□□□□□ -0.77
CCDC88C-204ENST00000389857 PYGO2Q9BRQ0 406 aa10.22□□□□□ -0.77
CCDC88C-204ENST00000389857 ZNF581Q9P0T4 197 aa10.22□□□□□ -0.77
CCDC88C-204ENST00000389857 DKK4Q9UBT3 224 aa10.22□□□□□ -0.77
CCDC88C-204ENST00000389857 TRIOBPQ9H2D6 2365 aa10.22□□□□□ -0.77
CCDC88C-204ENST00000389857 TEX36Q5VZQ5 186 aa10.22□□□□□ -0.77
CCDC88C-204ENST00000389857 IGHV7-4-1A0A0J9YVY3 117 aa10.21□□□□□ -0.77
CCDC88C-204ENST00000389857 CFHR4Q92496 578 aa10.21□□□□□ -0.77
CCDC88C-204ENST00000389857 ATP6V0BQ99437 205 aa10.21□□□□□ -0.77
CCDC88C-204ENST00000389857 C20orf78Q9BR46 151 aa10.21□□□□□ -0.77
CCDC88C-204ENST00000389857 H3BUA1 57 aa10.21□□□□□ -0.77
CCDC88C-204ENST00000389857 LINC00311Q8N616 119 aa10.21□□□□□ -0.77
CCDC88C-204ENST00000389857 ZNRD1Q9P1U0 126 aa10.21□□□□□ -0.77
CCDC88C-204ENST00000389857 HLA-DMBP28068 263 aa10.21□□□□□ -0.77
CCDC88C-204ENST00000389857 TMEM258P61165 79 aa10.21□□□□□ -0.77
CCDC88C-204ENST00000389857 MRPL53Q96EL3 112 aaKnown RBP10.21□□□□□ -0.78
CCDC88C-204ENST00000389857 CARD19Q96LW7 228 aa10.21□□□□□ -0.78
CCDC88C-204ENST00000389857 C20orf144Q9BQM9 153 aa10.21□□□□□ -0.78
CCDC88C-204ENST00000389857 NCKAP5O14513 1909 aa10.21□□□□□ -0.78
CCDC88C-204ENST00000389857 MGAMO43451 1857 aa10.21□□□□□ -0.78
CCDC88C-204ENST00000389857 DOCK7Q96N67 2140 aa10.21□□□□□ -0.78
CCDC88C-204ENST00000389857 TRAV12-1A0A0B4J245 112 aa10.21□□□□□ -0.78
CCDC88C-204ENST00000389857 COX8AP10176 69 aa10.21□□□□□ -0.78
CCDC88C-204ENST00000389857 EGR2P11161 476 aaPredicted RBP10.21□□□□□ -0.78
CCDC88C-204ENST00000389857 MAPK1IP1LQ8NDC0 245 aa10.21□□□□□ -0.78
CCDC88C-204ENST00000389857 FAM231DQ6ZW35 169 aa10.21□□□□□ -0.78
CCDC88C-204ENST00000389857 TSSC4Q9Y5U2 329 aaPredicted RBP10.21□□□□□ -0.78
CCDC88C-204ENST00000389857 RNF144BQ7Z419 303 aa10.2□□□□□ -0.78
CCDC88C-204ENST00000389857 IGKV2D-24A0A075B6R9 120 aa10.2□□□□□ -0.78
CCDC88C-204ENST00000389857 GTF3C1Q12789 2109 aa10.2□□□□□ -0.78
CCDC88C-204ENST00000389857 IGKV1-39P01597 117 aa10.2□□□□□ -0.78
CCDC88C-204ENST00000389857 IGKV1D-39P04432 117 aa10.2□□□□□ -0.78
CCDC88C-204ENST00000389857 PLXND1Q9Y4D7 1925 aa10.2□□□□□ -0.78
CCDC88C-204ENST00000389857 C17orf58Q2M2W7 97 aa10.2□□□□□ -0.78
CCDC88C-204ENST00000389857 FOXI2Q6ZQN5 318 aa10.2□□□□□ -0.78
CCDC88C-204ENST00000389857 F8VRH5 84 aa10.19□□□□□ -0.78
CCDC88C-204ENST00000389857 ELANEP08246 267 aa10.19□□□□□ -0.78
CCDC88C-204ENST00000389857 A8MWP6 167 aa10.19□□□□□ -0.78
CCDC88C-204ENST00000389857 NBL1P41271 181 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms