RNA–Protein interactions for RNA: ENST00000380285.7

SNX1-202, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 8,119 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-202ENST00000380285 PRR25Q96S07 402 aa7.71□□□□□ -1.18
SNX1-202ENST00000380285 SIGLEC8Q9NYZ4 499 aa7.71□□□□□ -1.18
SNX1-202ENST00000380285 A0A0U1RRA0 63 aa7.71□□□□□ -1.18
SNX1-202ENST00000380285 B4DSR2 109 aa7.71□□□□□ -1.18
SNX1-202ENST00000380285 HOXD3P31249 432 aaPredicted RBP7.71□□□□□ -1.18
SNX1-202ENST00000380285 CYYR1Q96J86 154 aa7.71□□□□□ -1.18
SNX1-202ENST00000380285 TANC2Q9HCD6 1990 aa7.71□□□□□ -1.18
SNX1-202ENST00000380285 C5orf63A6NC05 138 aa7.71□□□□□ -1.18
SNX1-202ENST00000380285 FCN3O75636 299 aa7.71□□□□□ -1.18
SNX1-202ENST00000380285 RPL32P62910 135 aaKnown RBP7.71□□□□□ -1.18
SNX1-202ENST00000380285 LINC00479Q96M42 142 aa7.71□□□□□ -1.18
SNX1-202ENST00000380285 C1orf159Q96HA4 380 aa7.71□□□□□ -1.18
SNX1-202ENST00000380285 RHPN1-AS1Q9BWJ2 59 aa7.71□□□□□ -1.18
SNX1-202ENST00000380285 LENEPQ9Y5L5 61 aa7.71□□□□□ -1.18
SNX1-202ENST00000380285 ACACAQ13085 2346 aa7.71□□□□□ -1.18
SNX1-202ENST00000380285 FGF6P10767 208 aa7.7□□□□□ -1.18
SNX1-202ENST00000380285 RBMY1FQ15415 496 aaKnown RBP7.7□□□□□ -1.18
SNX1-202ENST00000380285 SMIM2Q9BVW6 85 aa7.7□□□□□ -1.18
SNX1-202ENST00000380285 IGLV3-1P01715 115 aa7.7□□□□□ -1.18
SNX1-202ENST00000380285 FOXG1P55316 489 aaPredicted RBP7.7□□□□□ -1.18
SNX1-202ENST00000380285 NPC2P61916 151 aa7.7□□□□□ -1.18
SNX1-202ENST00000380285 ETDBQ3ZM63 59 aa7.7□□□□□ -1.18
SNX1-202ENST00000380285 RNF144BQ7Z419 303 aa7.7□□□□□ -1.18
SNX1-202ENST00000380285 SPACA3Q8IXA5 215 aa7.7□□□□□ -1.18
SNX1-202ENST00000380285 EP300Q09472 2414 aaPredicted RBP7.7□□□□□ -1.18
SNX1-202ENST00000380285 RBAKDNA6NC62 111 aa7.7□□□□□ -1.18
SNX1-202ENST00000380285 OXLD1Q5BKU9 147 aa7.7□□□□□ -1.18
SNX1-202ENST00000380285 SSC4DQ8WTU2 575 aa7.7□□□□□ -1.18
SNX1-202ENST00000380285 RNF166Q96A37 237 aaPredicted RBP7.7□□□□□ -1.18
SNX1-202ENST00000380285 SHANK1Q9Y566 2161 aa7.7□□□□□ -1.18
SNX1-202ENST00000380285 HTN3P15516 51 aa7.7□□□□□ -1.18
SNX1-202ENST00000380285 DEFB125Q8N687 156 aa7.7□□□□□ -1.18
SNX1-202ENST00000380285 Q8NFD4 153 aa7.7□□□□□ -1.18
SNX1-202ENST00000380285 ROS1P08922 2347 aa7.7□□□□□ -1.18
SNX1-202ENST00000380285 TMEM131Q92545 1883 aa7.7□□□□□ -1.18
SNX1-202ENST00000380285 LTAP01374 205 aa7.7□□□□□ -1.18
SNX1-202ENST00000380285 FXYD7P58549 80 aa7.7□□□□□ -1.18
SNX1-202ENST00000380285 ZNF493Q6ZR52 646 aa7.7□□□□□ -1.18
SNX1-202ENST00000380285 MRPL53Q96EL3 112 aaKnown RBP7.7□□□□□ -1.18
SNX1-202ENST00000380285 IGLC7A0M8Q6 106 aa7.7□□□□□ -1.18
SNX1-202ENST00000380285 RHOHQ15669 191 aa7.7□□□□□ -1.18
SNX1-202ENST00000380285 TRIOBPQ9H2D6 2365 aa7.7□□□□□ -1.18
SNX1-202ENST00000380285 TCF15Q12870 199 aa7.69□□□□□ -1.18
SNX1-202ENST00000380285 IGHV2-70DA0A0C4DH43 119 aa7.69□□□□□ -1.18
SNX1-202ENST00000380285 TMEM213A2RRL7 107 aa7.69□□□□□ -1.18
SNX1-202ENST00000380285 GAGE12JA6NER3 117 aa7.69□□□□□ -1.18
SNX1-202ENST00000380285 GAGE7O76087 117 aa7.69□□□□□ -1.18
SNX1-202ENST00000380285 GAGE12FP0CL80 117 aa7.69□□□□□ -1.18
SNX1-202ENST00000380285 GAGE12GP0CL81 117 aa7.69□□□□□ -1.18
SNX1-202ENST00000380285 GAGE12IP0CL82 117 aa7.69□□□□□ -1.18
SNX1-202ENST00000380285 GAGE4Q13068 117 aa7.69□□□□□ -1.18
SNX1-202ENST00000380285 H3BQ85 93 aa7.69□□□□□ -1.18
SNX1-202ENST00000380285 GVINP1Q7Z2Y8 2422 aa7.69□□□□□ -1.18
SNX1-202ENST00000380285 SPTAN1Q13813 2472 aaKnown RBP7.69□□□□□ -1.18
SNX1-202ENST00000380285 AZU1P20160 251 aa7.69□□□□□ -1.18
SNX1-202ENST00000380285 HERVK_113P63121 156 aa7.69□□□□□ -1.18
SNX1-202ENST00000380285 UBE2E1P51965 193 aa7.69□□□□□ -1.18
SNX1-202ENST00000380285 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.68□□□□□ -1.189e-7■■■■□ 23.5
SNX1-202ENST00000380285 TEX36Q5VZQ5 186 aa7.68□□□□□ -1.18
SNX1-202ENST00000380285 SVIPQ8NHG7 77 aa7.68□□□□□ -1.18
SNX1-202ENST00000380285 FXYD5Q96DB9 178 aa7.68□□□□□ -1.18
SNX1-202ENST00000380285 TRBV25-1A0A075B6N4 114 aa7.68□□□□□ -1.18
SNX1-202ENST00000380285 TANC1Q9C0D5 1861 aa7.68□□□□□ -1.18
SNX1-202ENST00000380285 NDUFA4O00483 81 aa7.68□□□□□ -1.18
SNX1-202ENST00000380285 NPYP01303 97 aa7.68□□□□□ -1.18
SNX1-202ENST00000380285 Q0VFX4 171 aa7.68□□□□□ -1.18
SNX1-202ENST00000380285 ANKRD29Q8N6D5 301 aa7.68□□□□□ -1.18
SNX1-202ENST00000380285 Q6ZVH6 145 aa7.68□□□□□ -1.18
SNX1-202ENST00000380285 COL6A6A6NMZ7 2263 aa7.68□□□□□ -1.18
SNX1-202ENST00000380285 A0A1B0GUS0 222 aa7.68□□□□□ -1.18
SNX1-202ENST00000380285 PIP4P2Q8N4L2 257 aa7.68□□□□□ -1.18
SNX1-202ENST00000380285 ZNF114Q8NC26 417 aa7.68□□□□□ -1.18
SNX1-202ENST00000380285 DENND4CQ5VZ89 1909 aa7.68□□□□□ -1.18
SNX1-202ENST00000380285 IGHV1-69DA0A0B4J2H0 117 aa7.68□□□□□ -1.18
SNX1-202ENST00000380285 SDHAF1A6NFY7 115 aa7.68□□□□□ -1.18
SNX1-202ENST00000380285 C8orf49Q96NF6 230 aa7.68□□□□□ -1.18
SNX1-202ENST00000380285 ZNF581Q9P0T4 197 aa7.68□□□□□ -1.18
SNX1-202ENST00000380285 GAGE5Q13069 117 aa7.67□□□□□ -1.18
SNX1-202ENST00000380285 GAGE6Q13070 117 aa7.67□□□□□ -1.18
SNX1-202ENST00000380285 PKDREJQ9NTG1 2253 aa7.67□□□□□ -1.18
SNX1-202ENST00000380285 A0A087WWL8 130 aa7.67□□□□□ -1.18
SNX1-202ENST00000380285 PRR20EP86478 221 aa7.67□□□□□ -1.18
SNX1-202ENST00000380285 PRR20CP86479 221 aa7.67□□□□□ -1.18
SNX1-202ENST00000380285 PRR20DP86480 221 aa7.67□□□□□ -1.18
SNX1-202ENST00000380285 PRR20BP86481 221 aa7.67□□□□□ -1.18
SNX1-202ENST00000380285 PRR20AP86496 221 aa7.67□□□□□ -1.18
SNX1-202ENST00000380285 MRPL35Q9NZE8 188 aaKnown RBP7.67□□□□□ -1.18
SNX1-202ENST00000380285 IGKV1-39P01597 117 aa7.67□□□□□ -1.18
SNX1-202ENST00000380285 IGKV1D-39P04432 117 aa7.67□□□□□ -1.18
SNX1-202ENST00000380285 TMEM258P61165 79 aa7.67□□□□□ -1.18
SNX1-202ENST00000380285 NDPQ00604 133 aa7.67□□□□□ -1.18
SNX1-202ENST00000380285 C12orf74Q32Q52 190 aa7.67□□□□□ -1.18
SNX1-202ENST00000380285 HAPLN4Q86UW8 402 aa7.67□□□□□ -1.18
SNX1-202ENST00000380285 TRAV13-1A0A0B4J241 112 aa7.67□□□□□ -1.18
SNX1-202ENST00000380285 SUMO4Q6EEV6 95 aa7.67□□□□□ -1.18
SNX1-202ENST00000380285 NDUFA12Q9UI09 145 aa7.67□□□□□ -1.18
SNX1-202ENST00000380285 J3QQQ9 107 aa7.67□□□□□ -1.18
SNX1-202ENST00000380285 NDUFS7O75251 213 aa7.67□□□□□ -1.18
SNX1-202ENST00000380285 MRAPQ8TCY5 172 aa7.67□□□□□ -1.18
SNX1-202ENST00000380285 ABCA4P78363 2273 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms