RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 XCL2Q9UBD3 114 aa10.98□□□□□ -0.65
SMPDL3A-201ENST00000368440 PRAC2D3DTV9 90 aa10.98□□□□□ -0.65
SMPDL3A-201ENST00000368440 SRP19P09132 144 aaKnown RBP10.98□□□□□ -0.65
SMPDL3A-201ENST00000368440 ATP5G3P48201 142 aa10.98□□□□□ -0.65
SMPDL3A-201ENST00000368440 AMTNQ6UX39 209 aa10.98□□□□□ -0.65
SMPDL3A-201ENST00000368440 RPUSD4Q96CM3 377 aaKnown RBP10.98□□□□□ -0.65
SMPDL3A-201ENST00000368440 PAXXQ9BUH6 204 aa10.98□□□□□ -0.65
SMPDL3A-201ENST00000368440 ZNF253O75346 499 aa10.97□□□□□ -0.65
SMPDL3A-201ENST00000368440 UBE2L3P68036 154 aaKnown RBP10.97□□□□□ -0.65
SMPDL3A-201ENST00000368440 MEF2BQ02080 365 aaPredicted RBP10.97□□□□□ -0.65
SMPDL3A-201ENST00000368440 OR8A1Q8NGG7 326 aa10.97□□□□□ -0.65
SMPDL3A-201ENST00000368440 OR11H2Q8NH07 326 aa10.97□□□□□ -0.65
SMPDL3A-201ENST00000368440 CLUHP3Q96NS8 147 aa10.97□□□□□ -0.65
SMPDL3A-201ENST00000368440 YTHDF2Q9Y5A9 579 aaKnown RBP10.97□□□□□ -0.65
SMPDL3A-201ENST00000368440 DNAH7Q8WXX0 4024 aa10.97□□□□□ -0.65
SMPDL3A-201ENST00000368440 C11orf94C9JXX5 98 aa10.96□□□□□ -0.65
SMPDL3A-201ENST00000368440 NUTF2P61970 127 aaKnown RBP10.96□□□□□ -0.65
SMPDL3A-201ENST00000368440 PSG9Q00887 426 aa10.96□□□□□ -0.65
SMPDL3A-201ENST00000368440 HIST1H1AQ02539 215 aaPredicted RBP10.96□□□□□ -0.65
SMPDL3A-201ENST00000368440 PQLC2Q6ZP29 291 aa10.96□□□□□ -0.65
SMPDL3A-201ENST00000368440 EXOC3-AS1Q8N2X6 119 aa10.96□□□□□ -0.65
SMPDL3A-201ENST00000368440 A0A0J9YWU9 116 aa10.95□□□□□ -0.66
SMPDL3A-201ENST00000368440 M0R3E3 92 aa10.95□□□□□ -0.66
SMPDL3A-201ENST00000368440 NBEAP1P0C6P0 100 aa10.95□□□□□ -0.66
SMPDL3A-201ENST00000368440 SOHLH1Q5JUK2 328 aa10.95□□□□□ -0.66
SMPDL3A-201ENST00000368440 SEC11CQ9BY50 192 aa10.95□□□□□ -0.66
SMPDL3A-201ENST00000368440 DUSP14O95147 198 aaKnown RBP10.95□□□□□ -0.66
SMPDL3A-201ENST00000368440 PDE6HQ13956 83 aa10.95□□□□□ -0.66
SMPDL3A-201ENST00000368440 ZNF674Q2M3X9 581 aa10.95□□□□□ -0.66
SMPDL3A-201ENST00000368440 ATRAIDQ6UW56 229 aa10.94□□□□□ -0.66
SMPDL3A-201ENST00000368440 C1QTNF4Q9BXJ3 329 aa10.94□□□□□ -0.66
SMPDL3A-201ENST00000368440 TMEM167BQ9NRX6 74 aa10.94□□□□□ -0.66
SMPDL3A-201ENST00000368440 X6R8D5 127 aa10.94□□□□□ -0.66
SMPDL3A-201ENST00000368440 FAM74A7A6NL05 159 aa10.93□□□□□ -0.66
SMPDL3A-201ENST00000368440 M0R2Z0 102 aa10.93□□□□□ -0.66
SMPDL3A-201ENST00000368440 PMS2P11Q13670 270 aa10.93□□□□□ -0.66
SMPDL3A-201ENST00000368440 SPINK13Q1W4C9 94 aa10.93□□□□□ -0.66
SMPDL3A-201ENST00000368440 CCDC28AQ8IWP9 274 aa10.93□□□□□ -0.66
SMPDL3A-201ENST00000368440 MUC7Q8TAX7 377 aa10.93□□□□□ -0.66
SMPDL3A-201ENST00000368440 SMDT1Q9H4I9 107 aa10.93□□□□□ -0.66
SMPDL3A-201ENST00000368440 CARHSP1Q9Y2V2 147 aaKnown RBP10.93□□□□□ -0.66
SMPDL3A-201ENST00000368440 DEFB4AO15263 64 aa10.93□□□□□ -0.66
SMPDL3A-201ENST00000368440 C10orf91Q5T1B1 145 aa10.93□□□□□ -0.66
SMPDL3A-201ENST00000368440 SVBPQ8N300 66 aa10.92□□□□□ -0.66
SMPDL3A-201ENST00000368440 Q8NAQ8 132 aa10.92□□□□□ -0.66
SMPDL3A-201ENST00000368440 MRPL53Q96EL3 112 aaKnown RBP10.92□□□□□ -0.66
SMPDL3A-201ENST00000368440 M0R036 132 aa10.91□□□□□ -0.66
SMPDL3A-201ENST00000368440 CRXO43186 299 aaPredicted RBP10.91□□□□□ -0.66
SMPDL3A-201ENST00000368440 TAGLN2P37802 199 aaKnown RBP10.91□□□□□ -0.66
SMPDL3A-201ENST00000368440 RANP62826 216 aaKnown RBP10.91□□□□□ -0.66
SMPDL3A-201ENST00000368440 AAMDCQ9H7C9 122 aa10.91□□□□□ -0.66
SMPDL3A-201ENST00000368440 TRAV12-2A0A075B6T6 113 aa10.91□□□□□ -0.66
SMPDL3A-201ENST00000368440 IGHV4-28A0A0C4DH34 117 aa10.91□□□□□ -0.66
SMPDL3A-201ENST00000368440 SCO2A0A1W2PP80 73 aa10.91□□□□□ -0.66
SMPDL3A-201ENST00000368440 SUMO1P63165 101 aaKnown RBP10.91□□□□□ -0.66
SMPDL3A-201ENST00000368440 ZNF705AQ6ZN79 300 aaPredicted RBP10.91□□□□□ -0.66
SMPDL3A-201ENST00000368440 C1orf158Q8N1D5 194 aa10.91□□□□□ -0.66
SMPDL3A-201ENST00000368440 OR10J6PQ8NGY7 276 aa10.91□□□□□ -0.66
SMPDL3A-201ENST00000368440 Q9H3A6 140 aa10.91□□□□□ -0.66
SMPDL3A-201ENST00000368440 PRELID1Q9Y255 219 aa10.91□□□□□ -0.66
SMPDL3A-201ENST00000368440 CSMD3Q7Z407 3707 aa10.91□□□□□ -0.66
SMPDL3A-201ENST00000368440 IGHV3OR16-12A0A075B7B8 117 aa10.9□□□□□ -0.66
SMPDL3A-201ENST00000368440 GGTLC3B5MD39 225 aa10.9□□□□□ -0.66
SMPDL3A-201ENST00000368440 NPIPB6E9PJ23 425 aa10.9□□□□□ -0.66
SMPDL3A-201ENST00000368440 RBMY1A1P0DJD3 496 aaKnown RBP10.9□□□□□ -0.66
SMPDL3A-201ENST00000368440 RBMY1CP0DJD4 496 aa10.9□□□□□ -0.66
SMPDL3A-201ENST00000368440 ERCC8Q13216 396 aa10.9□□□□□ -0.66
SMPDL3A-201ENST00000368440 RBMY1FQ15415 496 aaKnown RBP10.9□□□□□ -0.66
SMPDL3A-201ENST00000368440 DERL1Q9BUN8 251 aa10.9□□□□□ -0.66
SMPDL3A-201ENST00000368440 IGKV2-40A0A087WW87 121 aaPredicted RBP10.89□□□□□ -0.67
SMPDL3A-201ENST00000368440 ZNF727A8MUV8 499 aa10.89□□□□□ -0.67
SMPDL3A-201ENST00000368440 PDE6DO43924 150 aa10.89□□□□□ -0.67
SMPDL3A-201ENST00000368440 IGKV2D-40P01614 121 aaPredicted RBP10.89□□□□□ -0.67
SMPDL3A-201ENST00000368440 AKR1C3P42330 323 aa10.89□□□□□ -0.67
SMPDL3A-201ENST00000368440 KIR3DS1Q14943 382 aa10.89□□□□□ -0.67
SMPDL3A-201ENST00000368440 ZFAND6Q6FIF0 208 aa10.89□□□□□ -0.67
SMPDL3A-201ENST00000368440 IL17DQ8TAD2 202 aa10.89□□□□□ -0.67
SMPDL3A-201ENST00000368440 IGF2BP2-AS1Q96M15 143 aa10.89□□□□□ -0.67
SMPDL3A-201ENST00000368440 SMIM7Q9BQ49 75 aa10.89□□□□□ -0.67
SMPDL3A-201ENST00000368440 NKX6-2Q9C056 277 aaPredicted RBP10.89□□□□□ -0.67
SMPDL3A-201ENST00000368440 PARLQ9H300 379 aa10.89□□□□□ -0.67
SMPDL3A-201ENST00000368440 C11orf68Q9H3H3 251 aaKnown RBP10.89□□□□□ -0.67
SMPDL3A-201ENST00000368440 CT45A10P0DMU9 189 aa10.89□□□□□ -0.67
SMPDL3A-201ENST00000368440 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.89□□□□□ -0.67
SMPDL3A-201ENST00000368440 PPP1R14DQ9NXH3 145 aa10.89□□□□□ -0.67
SMPDL3A-201ENST00000368440 RPH3ALQ9UNE2 315 aa10.89□□□□□ -0.67
SMPDL3A-201ENST00000368440 TMEM250H0YL14 139 aa10.88□□□□□ -0.67
SMPDL3A-201ENST00000368440 SNAPINO95295 136 aa10.88□□□□□ -0.67
SMPDL3A-201ENST00000368440 AMBPP02760 352 aa10.88□□□□□ -0.67
SMPDL3A-201ENST00000368440 MIFP14174 115 aa10.88□□□□□ -0.67
SMPDL3A-201ENST00000368440 CLRN3Q8NCR9 226 aa10.88□□□□□ -0.67
SMPDL3A-201ENST00000368440 SUN5Q8TC36 379 aa10.88□□□□□ -0.67
SMPDL3A-201ENST00000368440 NIPSNAP3BQ9BS92 247 aa10.88□□□□□ -0.67
SMPDL3A-201ENST00000368440 F6UZH7 168 aa10.87□□□□□ -0.67
SMPDL3A-201ENST00000368440 C3orf84H3BNL1 204 aa10.87□□□□□ -0.67
SMPDL3A-201ENST00000368440 INSP01308 110 aa10.87□□□□□ -0.67
SMPDL3A-201ENST00000368440 LYPD1Q8N2G4 141 aa10.87□□□□□ -0.67
SMPDL3A-201ENST00000368440 VGLL1Q99990 258 aa10.87□□□□□ -0.67
SMPDL3A-201ENST00000368440 AGPAT4-IT1Q9H0P7 198 aa10.87□□□□□ -0.67
SMPDL3A-201ENST00000368440 STARD9Q9P2P6 4700 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms