RNA–Protein interactions for RNA: ENST00000345662.5

SPAST-202, Transcript of spastin, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SPAST, Length 5,116 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPAST-202ENST00000345662 LYPD2Q6UXB3 125 aa13.99□□□□□ -0.17
SPAST-202ENST00000345662 PCP2Q8IVA1 136 aa13.99□□□□□ -0.17
SPAST-202ENST00000345662 RPL36AP83881 106 aaKnown RBP13.99□□□□□ -0.17
SPAST-202ENST00000345662 TRPT1Q86TN4 253 aaKnown RBP13.99□□□□□ -0.17
SPAST-202ENST00000345662 LYPD6Q86Y78 171 aa13.99□□□□□ -0.17
SPAST-202ENST00000345662 RPL36ALQ969Q0 106 aaKnown RBP13.99□□□□□ -0.17
SPAST-202ENST00000345662 POLEQ07864 2286 aa13.99□□□□□ -0.17
SPAST-202ENST00000345662 IL17RELQ6ZVW7 336 aa13.99□□□□□ -0.17
SPAST-202ENST00000345662 THAP8Q8NA92 274 aa13.99□□□□□ -0.17
SPAST-202ENST00000345662 COX6B1P14854 86 aa13.98□□□□□ -0.17
SPAST-202ENST00000345662 C17orf58Q2M2W7 97 aa13.98□□□□□ -0.17
SPAST-202ENST00000345662 JPT2Q9H910 190 aa13.98□□□□□ -0.17
SPAST-202ENST00000345662 HLA-DMBP28068 263 aa13.98□□□□□ -0.17
SPAST-202ENST00000345662 ZNF625Q96I27 306 aaPredicted RBP13.98□□□□□ -0.17
SPAST-202ENST00000345662 LAMTOR3Q9UHA4 124 aa13.98□□□□□ -0.17
SPAST-202ENST00000345662 M0R1W7 72 aa13.98□□□□□ -0.17
SPAST-202ENST00000345662 DTX2Q86UW9 622 aa13.98□□□□□ -0.17
SPAST-202ENST00000345662 SMIM2Q9BVW6 85 aa13.98□□□□□ -0.17
SPAST-202ENST00000345662 PLXND1Q9Y4D7 1925 aa13.98□□□□□ -0.17
SPAST-202ENST00000345662 H3BRN7 92 aa13.97□□□□□ -0.17
SPAST-202ENST00000345662 TMEM105Q8N8V8 129 aa13.97□□□□□ -0.17
SPAST-202ENST00000345662 A0A087WX48 190 aa13.97□□□□□ -0.17
SPAST-202ENST00000345662 TRAV26-2A0A0B4J265 109 aa13.97□□□□□ -0.17
SPAST-202ENST00000345662 ZNF415Q09FC8 603 aa13.97□□□□□ -0.17
SPAST-202ENST00000345662 C1orf159Q96HA4 380 aa13.97□□□□□ -0.17
SPAST-202ENST00000345662 SCRT2Q9NQ03 307 aa13.97□□□□□ -0.17
SPAST-202ENST00000345662 MORN5Q5VZ52 161 aa13.97□□□□□ -0.17
SPAST-202ENST00000345662 B5MCH6 92 aa13.96□□□□□ -0.17
SPAST-202ENST00000345662 SSC4DQ8WTU2 575 aa13.96□□□□□ -0.17
SPAST-202ENST00000345662 K7EM74 188 aa13.96□□□□□ -0.17
SPAST-202ENST00000345662 ZNF134P52741 427 aa13.96□□□□□ -0.17
SPAST-202ENST00000345662 Q6ZR03 302 aa13.96□□□□□ -0.17
SPAST-202ENST00000345662 EFNA4P52798 201 aa13.96□□□□□ -0.17
SPAST-202ENST00000345662 POU2AF1Q16633 256 aa13.96□□□□□ -0.17
SPAST-202ENST00000345662 UTF1Q5T230 341 aa13.96□□□□□ -0.17
SPAST-202ENST00000345662 LINC01545Q5VT33 79 aa13.96□□□□□ -0.17
SPAST-202ENST00000345662 BOD1L2Q8IYS8 172 aa13.96□□□□□ -0.17
SPAST-202ENST00000345662 PRSS22Q9GZN4 317 aa13.96□□□□□ -0.17
SPAST-202ENST00000345662 TAX1BP3O14907 124 aa13.96□□□□□ -0.18
SPAST-202ENST00000345662 SHANK1Q9Y566 2161 aa13.96□□□□□ -0.18
SPAST-202ENST00000345662 TMEM219Q86XT9 240 aa13.95□□□□□ -0.18
SPAST-202ENST00000345662 MBD3L4A6NDZ8 208 aaPredicted RBP13.95□□□□□ -0.18
SPAST-202ENST00000345662 MBD3L3A6NE82 208 aaPredicted RBP13.95□□□□□ -0.18
SPAST-202ENST00000345662 MBD3L5A6NJ08 208 aaPredicted RBP13.95□□□□□ -0.18
SPAST-202ENST00000345662 FAM120AOSQ5T036 256 aa13.95□□□□□ -0.18
SPAST-202ENST00000345662 SH2D6Q7Z4S9 175 aa13.95□□□□□ -0.18
SPAST-202ENST00000345662 MBD3L2Q8NHZ7 208 aaPredicted RBP13.95□□□□□ -0.18
SPAST-202ENST00000345662 PROK2Q9HC23 129 aa13.95□□□□□ -0.18
SPAST-202ENST00000345662 MGAMO43451 1857 aa13.94□□□□□ -0.18
SPAST-202ENST00000345662 CHD3Q12873 2000 aaKnown RBP13.94□□□□□ -0.18
SPAST-202ENST00000345662 TRAV13-1A0A0B4J241 112 aa13.94□□□□□ -0.18
SPAST-202ENST00000345662 IGHG3P01860 377 aa13.94□□□□□ -0.18
SPAST-202ENST00000345662 IGLC1P0CG04 106 aa13.94□□□□□ -0.18
SPAST-202ENST00000345662 RHPN1-AS1Q9BWJ2 59 aa13.94□□□□□ -0.18
SPAST-202ENST00000345662 SS18L2Q9UHA2 77 aa13.94□□□□□ -0.18
SPAST-202ENST00000345662 ZNF503-AS2A6NEH8 195 aa13.94□□□□□ -0.18
SPAST-202ENST00000345662 FAM223BA6NKX1 122 aa13.94□□□□□ -0.18
SPAST-202ENST00000345662 FAM223AQ8IWN6 122 aa13.94□□□□□ -0.18
SPAST-202ENST00000345662 PF4P02776 101 aa13.94□□□□□ -0.18
SPAST-202ENST00000345662 NTN5Q8WTR8 489 aaPredicted RBP13.94□□□□□ -0.18
SPAST-202ENST00000345662 IGLL5B9A064 214 aa13.93□□□□□ -0.18
SPAST-202ENST00000345662 SOCS3O14543 225 aa13.93□□□□□ -0.18
SPAST-202ENST00000345662 GATA4P43694 442 aa13.93□□□□□ -0.18
SPAST-202ENST00000345662 LINC00173Q6ZV60 143 aa13.93□□□□□ -0.18
SPAST-202ENST00000345662 C15orf53Q8NAA6 179 aa13.93□□□□□ -0.18
SPAST-202ENST00000345662 USMG5Q96IX5 58 aa13.93□□□□□ -0.18
SPAST-202ENST00000345662 TRBV25-1A0A075B6N4 114 aa13.93□□□□□ -0.18
SPAST-202ENST00000345662 SDHAF1A6NFY7 115 aa13.93□□□□□ -0.18
SPAST-202ENST00000345662 DOPEY2Q9Y3R5 2298 aa13.93□□□□□ -0.18
SPAST-202ENST00000345662 ANKRD39Q53RE8 183 aa13.93□□□□□ -0.18
SPAST-202ENST00000345662 PRDM6Q9NQX0 595 aa13.93□□□□□ -0.18
SPAST-202ENST00000345662 VWC2LB2RUY7 222 aa13.93□□□□□ -0.18
SPAST-202ENST00000345662 MYO7BQ6PIF6 2116 aa13.92□□□□□ -0.18
SPAST-202ENST00000345662 YLPM1P49750 1951 aaKnown RBP13.92□□□□□ -0.18
SPAST-202ENST00000345662 NLRC5Q86WI3 1866 aa13.92□□□□□ -0.18
SPAST-202ENST00000345662 J3QQQ9 107 aa13.92□□□□□ -0.18
SPAST-202ENST00000345662 CARD19Q96LW7 228 aa13.92□□□□□ -0.18
SPAST-202ENST00000345662 HELZP42694 1942 aaKnown RBP13.92□□□□□ -0.18
SPAST-202ENST00000345662 C6orf226Q5I0X4 101 aa13.92□□□□□ -0.18
SPAST-202ENST00000345662 FOXI2Q6ZQN5 318 aa13.92□□□□□ -0.18
SPAST-202ENST00000345662 PLXNA2O75051 1894 aa13.92□□□□□ -0.18
SPAST-202ENST00000345662 DOCK10Q96BY6 2186 aa13.92□□□□□ -0.18
SPAST-202ENST00000345662 C20orf78Q9BR46 151 aa13.91□□□□□ -0.18
SPAST-202ENST00000345662 Q8TCH9 128 aa13.91□□□□□ -0.18
SPAST-202ENST00000345662 I3L3M4 83 aa13.91□□□□□ -0.18
SPAST-202ENST00000345662 LINC00311Q8N616 119 aa13.91□□□□□ -0.18
SPAST-202ENST00000345662 NDUFA12Q9UI09 145 aa13.91□□□□□ -0.18
SPAST-202ENST00000345662 PKDREJQ9NTG1 2253 aa13.91□□□□□ -0.18
SPAST-202ENST00000345662 TRACP01848 142 aa13.9□□□□□ -0.18
SPAST-202ENST00000345662 TRGV1A0A0A0MS02 117 aa13.9□□□□□ -0.18
SPAST-202ENST00000345662 TPSG1Q9NRR2 321 aa13.9□□□□□ -0.18
SPAST-202ENST00000345662 DKK1O94907 266 aa13.89□□□□□ -0.19
SPAST-202ENST00000345662 FAM110DQ8TAY7 271 aaPredicted RBP13.89□□□□□ -0.19
SPAST-202ENST00000345662 DOCK7Q96N67 2140 aa13.89□□□□□ -0.19
SPAST-202ENST00000345662 ANKRD29Q8N6D5 301 aa13.89□□□□□ -0.19
SPAST-202ENST00000345662 DAZ1Q9NQZ3 744 aaKnown RBP13.89□□□□□ -0.19
SPAST-202ENST00000345662 EP300Q09472 2414 aaPredicted RBP13.89□□□□□ -0.19
SPAST-202ENST00000345662 DUX4L9Q6RFH8 374 aaPredicted RBP13.89□□□□□ -0.19
SPAST-202ENST00000345662 SHISA9B4DS77 424 aa13.88□□□□□ -0.19
SPAST-202ENST00000345662 CFC1BP0CG36 223 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms