RNA–Protein interactions for RNA: ENST00000345512.7

PTPRU-201, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRU, Length 4,470 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-201ENST00000345512 CHAC1Q9BUX1 264 aa12.29□□□□□ -0.44
PTPRU-201ENST00000345512 H3BRM9 83 aa12.29□□□□□ -0.44
PTPRU-201ENST00000345512 CHTOPQ9Y3Y2 248 aaKnown RBP12.29□□□□□ -0.44
PTPRU-201ENST00000345512 ORMDL2Q53FV1 153 aa12.29□□□□□ -0.44
PTPRU-201ENST00000345512 DEFB104AQ8WTQ1 72 aa12.29□□□□□ -0.44
PTPRU-201ENST00000345512 VGLL1Q99990 258 aa12.29□□□□□ -0.44
PTPRU-201ENST00000345512 TRAV40A0A0B4J280 105 aa12.29□□□□□ -0.44
PTPRU-201ENST00000345512 C9orf118A6NHY6 69 aa12.29□□□□□ -0.44
PTPRU-201ENST00000345512 INS-IGF2F8WCM5 200 aa12.29□□□□□ -0.44
PTPRU-201ENST00000345512 FAM106AQ4KMX7 169 aa12.29□□□□□ -0.44
PTPRU-201ENST00000345512 TRAV21A0A0B4J279 112 aa12.28□□□□□ -0.44
PTPRU-201ENST00000345512 M0R1W7 72 aa12.28□□□□□ -0.44
PTPRU-201ENST00000345512 PPP1R17O96001 155 aa12.28□□□□□ -0.44
PTPRU-201ENST00000345512 CTRLP40313 264 aa12.28□□□□□ -0.44
PTPRU-201ENST00000345512 PAX8Q06710 450 aa12.28□□□□□ -0.44
PTPRU-201ENST00000345512 SIGLEC15Q6ZMC9 328 aa12.28□□□□□ -0.44
PTPRU-201ENST00000345512 TMEM219Q86XT9 240 aa12.28□□□□□ -0.44
PTPRU-201ENST00000345512 MBD6Q96DN6 1003 aa12.28□□□□□ -0.44
PTPRU-201ENST00000345512 TP73-AS1Q9UF72 201 aa12.28□□□□□ -0.44
PTPRU-201ENST00000345512 TGFAP01135 160 aa12.28□□□□□ -0.44
PTPRU-201ENST00000345512 KLRB1Q12918 225 aa12.28□□□□□ -0.44
PTPRU-201ENST00000345512 LINC01559Q495D7 138 aa12.28□□□□□ -0.44
PTPRU-201ENST00000345512 SYT8Q8NBV8 401 aa12.28□□□□□ -0.44
PTPRU-201ENST00000345512 HLA-DMBP28068 263 aa12.27□□□□□ -0.44
PTPRU-201ENST00000345512 DKK2Q9UBU2 259 aa12.27□□□□□ -0.44
PTPRU-201ENST00000345512 A0A1B0GXF2 115 aa12.27□□□□□ -0.45
PTPRU-201ENST00000345512 I3L2K1 104 aa12.27□□□□□ -0.45
PTPRU-201ENST00000345512 TMEM8BA6NDV4 472 aa12.27□□□□□ -0.45
PTPRU-201ENST00000345512 ZNF815PA8K554 130 aa12.27□□□□□ -0.45
PTPRU-201ENST00000345512 SMAGPQ0VAQ4 97 aa12.27□□□□□ -0.45
PTPRU-201ENST00000345512 ANKRD39Q53RE8 183 aa12.27□□□□□ -0.45
PTPRU-201ENST00000345512 PIP4P1Q86T03 277 aa12.27□□□□□ -0.45
PTPRU-201ENST00000345512 CYSLTR1Q9Y271 337 aa12.27□□□□□ -0.45
PTPRU-201ENST00000345512 DOPEY2Q9Y3R5 2298 aa12.27□□□□□ -0.45
PTPRU-201ENST00000345512 MINOS1Q5TGZ0 78 aa12.27□□□□□ -0.45
PTPRU-201ENST00000345512 LINC01545Q5VT33 79 aa12.27□□□□□ -0.45
PTPRU-201ENST00000345512 C22orf34Q6ZV56 151 aa12.27□□□□□ -0.45
PTPRU-201ENST00000345512 IL17RELQ6ZVW7 336 aa12.27□□□□□ -0.45
PTPRU-201ENST00000345512 ZNF256Q9Y2P7 627 aaPredicted RBP12.27□□□□□ -0.45
PTPRU-201ENST00000345512 MINOS1-NBL1R4GNA1 71 aa12.27□□□□□ -0.45
PTPRU-201ENST00000345512 OOSP1A8MZH6 123 aa12.26□□□□□ -0.45
PTPRU-201ENST00000345512 K7EIM0 57 aa12.26□□□□□ -0.45
PTPRU-201ENST00000345512 CD300EQ496F6 205 aaPredicted RBP12.26□□□□□ -0.45
PTPRU-201ENST00000345512 C19orf71A6NCJ1 209 aa12.26□□□□□ -0.45
PTPRU-201ENST00000345512 K7EP13 123 aa12.26□□□□□ -0.45
PTPRU-201ENST00000345512 EGR2P11161 476 aaPredicted RBP12.26□□□□□ -0.45
PTPRU-201ENST00000345512 SCRT2Q9NQ03 307 aa12.26□□□□□ -0.45
PTPRU-201ENST00000345512 NDUFS7O75251 213 aa12.26□□□□□ -0.45
PTPRU-201ENST00000345512 RPL13AP40429 203 aaKnown RBP12.26□□□□□ -0.45
PTPRU-201ENST00000345512 CLEC2AQ6UVW9 174 aa12.26□□□□□ -0.45
PTPRU-201ENST00000345512 HOXA3O43365 443 aaPredicted RBP12.25□□□□□ -0.45
PTPRU-201ENST00000345512 PCP2Q8IVA1 136 aa12.25□□□□□ -0.45
PTPRU-201ENST00000345512 C14orf178Q8N769 122 aaPredicted RBP12.25□□□□□ -0.45
PTPRU-201ENST00000345512 WFDC12Q8WWY7 111 aa12.25□□□□□ -0.45
PTPRU-201ENST00000345512 TAX1BP3O14907 124 aa12.25□□□□□ -0.45
PTPRU-201ENST00000345512 SRD5A1P18405 259 aa12.25□□□□□ -0.45
PTPRU-201ENST00000345512 GAGE13Q4V321 117 aa12.25□□□□□ -0.45
PTPRU-201ENST00000345512 LINC00574Q9H8X3 128 aa12.25□□□□□ -0.45
PTPRU-201ENST00000345512 BEX4Q9NWD9 120 aaPredicted RBP12.25□□□□□ -0.45
PTPRU-201ENST00000345512 SHISA9B4DS77 424 aa12.24□□□□□ -0.45
PTPRU-201ENST00000345512 CRYGCP07315 174 aa12.24□□□□□ -0.45
PTPRU-201ENST00000345512 PRSS22Q9GZN4 317 aa12.24□□□□□ -0.45
PTPRU-201ENST00000345512 CDKN1BP46527 198 aa12.24□□□□□ -0.45
PTPRU-201ENST00000345512 PAX2Q02962 417 aa12.24□□□□□ -0.45
PTPRU-201ENST00000345512 DPF1Q92782 380 aa12.24□□□□□ -0.45
PTPRU-201ENST00000345512 SIGMAR1Q99720 223 aa12.24□□□□□ -0.45
PTPRU-201ENST00000345512 TLN1Q9Y490 2541 aaKnown RBP12.23□□□□□ -0.45
PTPRU-201ENST00000345512 CEACAM4O75871 244 aa12.23□□□□□ -0.45
PTPRU-201ENST00000345512 CD7P09564 240 aa12.23□□□□□ -0.45
PTPRU-201ENST00000345512 MLST8Q9BVC4 326 aa12.23□□□□□ -0.45
PTPRU-201ENST00000345512 TRAV26-2A0A0B4J265 109 aa12.23□□□□□ -0.45
PTPRU-201ENST00000345512 TRAV41A0A0B4J266 112 aa12.23□□□□□ -0.45
PTPRU-201ENST00000345512 TEX22C9J3V5 150 aa12.23□□□□□ -0.45
PTPRU-201ENST00000345512 PLNP26678 52 aa12.23□□□□□ -0.45
PTPRU-201ENST00000345512 G3V318 75 aa12.23□□□□□ -0.45
PTPRU-201ENST00000345512 GTSF1LQ9H1H1 148 aa12.23□□□□□ -0.45
PTPRU-201ENST00000345512 ATP6V0E1O15342 81 aa12.23□□□□□ -0.45
PTPRU-201ENST00000345512 DTX2Q86UW9 622 aa12.23□□□□□ -0.45
PTPRU-201ENST00000345512 H7C1H1 209 aa12.22□□□□□ -0.45
PTPRU-201ENST00000345512 K7EP34 96 aa12.22□□□□□ -0.45
PTPRU-201ENST00000345512 MSRB1Q9NZV6 116 aa12.22□□□□□ -0.45
PTPRU-201ENST00000345512 PAX1P15863 534 aa12.22□□□□□ -0.45
PTPRU-201ENST00000345512 A0A1B0GV72 72 aa12.22□□□□□ -0.45
PTPRU-201ENST00000345512 IGLV1-47P01700 117 aa12.21□□□□□ -0.45
PTPRU-201ENST00000345512 MRPL35Q9NZE8 188 aaKnown RBP12.21□□□□□ -0.45
PTPRU-201ENST00000345512 SAA4P35542 130 aa12.21□□□□□ -0.45
PTPRU-201ENST00000345512 SNRPD3P62318 126 aaKnown RBP12.21□□□□□ -0.45
PTPRU-201ENST00000345512 ADAMTSL5Q6ZMM2 481 aa12.21□□□□□ -0.45
PTPRU-201ENST00000345512 LCNL1Q6ZST4 164 aa12.21□□□□□ -0.45
PTPRU-201ENST00000345512 Q8N8P6 123 aa12.21□□□□□ -0.45
PTPRU-201ENST00000345512 GATA1P15976 413 aaPredicted RBP12.21□□□□□ -0.46
PTPRU-201ENST00000345512 ATP5J2P56134 94 aa12.21□□□□□ -0.46
PTPRU-201ENST00000345512 PIMREGQ9BSJ6 248 aa12.21□□□□□ -0.46
PTPRU-201ENST00000345512 OVOL1O14753 267 aa12.21□□□□□ -0.46
PTPRU-201ENST00000345512 C9orf139Q6ZV77 190 aa12.21□□□□□ -0.46
PTPRU-201ENST00000345512 A0A1W2PPM0 123 aa12.2□□□□□ -0.46
PTPRU-201ENST00000345512 DPH3P1Q9H4G8 78 aa12.2□□□□□ -0.46
PTPRU-201ENST00000345512 K7ERJ3 54 aa12.2□□□□□ -0.46
PTPRU-201ENST00000345512 DYNAPQ8N1N2 210 aa12.2□□□□□ -0.46
PTPRU-201ENST00000345512 NPFFR1Q9GZQ6 430 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 106.2 ms