RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 CYTL1Q9NRR1 136 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 SLC35D1Q9NTN3 355 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 ANXA10Q9UJ72 324 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 ASPMQ8IZT6 3477 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 A0A0A6YYD4 124 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 TGIF2-C20orf24A0A0A6YYL0 155 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 TEX13DA0A0J9YY54 714 aaPredicted RBP0.92□□□□□ -2.26
LINC00643-201ENST00000334389 TMEM272A0A1B0GTI8 110 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 A0A1W2PPK0 400 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 CRYM-AS1A6NIL9 109 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 GPR31O00270 319 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 BCL2L11O43521 198 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 PFN1P07737 140 aaKnown RBP0.92□□□□□ -2.26
LINC00643-201ENST00000334389 LINC00869P0C866 280 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 DUX4L4P0CJ87 422 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 RAB3BP20337 219 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 CA6P23280 308 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 MYL9P24844 172 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 S100GP29377 79 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 DDTP30046 118 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 LEPP41159 167 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 MTCP1P56278 107 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 TMEM50BP56557 158 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 TAS2R19P59542 299 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 NCS1P62166 190 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 BAXQ07812 192 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 FCN2Q15485 313 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 NNATQ16517 81 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 RPEL1Q2QD12 228 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 EIF5AL1Q6IS14 154 aaKnown RBP0.92□□□□□ -2.26
LINC00643-201ENST00000334389 FAM231DQ6ZW35 169 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 SSX6Q7RTT6 188 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 NOTCH2NLQ7Z3S9 236 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 FAM19A3Q7Z5A8 133 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 TMEM17Q86X19 198 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 BAP18Q8IXM2 172 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 LGI3Q8N145 548 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 ZNF676Q8N7Q3 588 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 NUDT10Q8NFP7 164 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 OR5D18Q8NGL1 313 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 PLPPR1Q8TBJ4 325 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 C7orf33Q8WU49 177 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 OTULINQ96BN8 352 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 FAM3DQ96BQ1 224 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 BTF3L4Q96K17 158 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 CCL13Q99616 98 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 THTPAQ9BU02 230 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 PDCD10Q9BUL8 212 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 C1QTNF6Q9BXI9 259 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 TMEM59Q9BXS4 323 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 MRPL32Q9BYC8 188 aaKnown RBP0.92□□□□□ -2.26
LINC00643-201ENST00000334389 FXYD6Q9H0Q3 95 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 AP5S1Q9NUS5 200 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 C11orf21Q9P2W6 132 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 RABAC1Q9UI14 185 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 TNFSF18Q9UNG2 199 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 F11RQ9Y624 299 aaKnown RBP0.92□□□□□ -2.26
LINC00643-201ENST00000334389 MYO7BQ6PIF6 2116 aa0.92□□□□□ -2.26
LINC00643-201ENST00000334389 FCGBPQ9Y6R7 5405 aaPredicted RBP0.91□□□□□ -2.26
LINC00643-201ENST00000334389 TRAV14DV4A0A0A6YYC5 116 aa0.91□□□□□ -2.26
LINC00643-201ENST00000334389 TRAV4A0A0B4J268 109 aa0.91□□□□□ -2.26
LINC00643-201ENST00000334389 IGLC7A0M8Q6 106 aa0.91□□□□□ -2.26
LINC00643-201ENST00000334389 C17orf51A8MQB3 221 aa0.91□□□□□ -2.26
LINC00643-201ENST00000334389 C11orf98E9PRG8 122 aa0.91□□□□□ -2.26
LINC00643-201ENST00000334389 I3L2K1 104 aa0.91□□□□□ -2.26
LINC00643-201ENST00000334389 PPP1R2P9O14990 202 aa0.91□□□□□ -2.26
LINC00643-201ENST00000334389 CDRT1O95170 752 aa0.91□□□□□ -2.26
LINC00643-201ENST00000334389 FGF7P21781 194 aa0.91□□□□□ -2.26
LINC00643-201ENST00000334389 PRKACGP22612 351 aa0.91□□□□□ -2.26
LINC00643-201ENST00000334389 OR10J1P30954 320 aa0.91□□□□□ -2.26
LINC00643-201ENST00000334389 TNFSF8P32971 234 aa0.91□□□□□ -2.26
LINC00643-201ENST00000334389 OR1E2P47887 323 aa0.91□□□□□ -2.26
LINC00643-201ENST00000334389 SUB1P53999 127 aaKnown RBP eCLIP0.91□□□□□ -2.26
LINC00643-201ENST00000334389 FGF8P55075 233 aaPredicted RBP0.91□□□□□ -2.26
LINC00643-201ENST00000334389 ACSM3Q53FZ2 586 aa0.91□□□□□ -2.26
LINC00643-201ENST00000334389 LINC00483Q53H64 154 aa0.91□□□□□ -2.26
LINC00643-201ENST00000334389 PYY3Q5JQD4 70 aa0.91□□□□□ -2.26
LINC00643-201ENST00000334389 TMEM78Q5T7P6 136 aa0.91□□□□□ -2.26
LINC00643-201ENST00000334389 RASL11AQ6T310 242 aa0.91□□□□□ -2.26
LINC00643-201ENST00000334389 SCXQ7RTU7 201 aa0.91□□□□□ -2.26
LINC00643-201ENST00000334389 KRTAP13-1Q8IUC0 172 aa0.91□□□□□ -2.26
LINC00643-201ENST00000334389 SVBPQ8N300 66 aa0.91□□□□□ -2.26
LINC00643-201ENST00000334389 C10orf53Q8N6V4 93 aa0.91□□□□□ -2.26
LINC00643-201ENST00000334389 OR11H4Q8NGC9 324 aa0.91□□□□□ -2.26
LINC00643-201ENST00000334389 RNASE11Q8TAA1 199 aaKnown RBP0.91□□□□□ -2.26
LINC00643-201ENST00000334389 DYNLRB2Q8TF09 96 aa0.91□□□□□ -2.26
LINC00643-201ENST00000334389 CCDC107Q8WV48 283 aa0.91□□□□□ -2.26
LINC00643-201ENST00000334389 C22orf15Q8WYQ4 148 aa0.91□□□□□ -2.26
LINC00643-201ENST00000334389 SEC22AQ96IW7 307 aa0.91□□□□□ -2.26
LINC00643-201ENST00000334389 PGLYRP4Q96LB8 373 aa0.91□□□□□ -2.26
LINC00643-201ENST00000334389 C2orf48Q96LS8 159 aa0.91□□□□□ -2.26
LINC00643-201ENST00000334389 SGK494Q96LW2 274 aa0.91□□□□□ -2.26
LINC00643-201ENST00000334389 MS4A10Q96PG2 267 aa0.91□□□□□ -2.26
LINC00643-201ENST00000334389 EMC6Q9BV81 110 aa0.91□□□□□ -2.26
LINC00643-201ENST00000334389 SAMD10Q9BYL1 202 aa0.91□□□□□ -2.26
LINC00643-201ENST00000334389 CTDSP1Q9GZU7 261 aa0.91□□□□□ -2.26
LINC00643-201ENST00000334389 RPP21Q9H633 154 aaKnown RBP0.91□□□□□ -2.26
LINC00643-201ENST00000334389 TXNL4BQ9NX01 149 aaKnown RBP0.91□□□□□ -2.26
LINC00643-201ENST00000334389 LINC00527Q9UJ94 153 aa0.91□□□□□ -2.26
LINC00643-201ENST00000334389 SSR3Q9UNL2 185 aa0.91□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms