RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 CYTL1Q9NRR1 136 aa10.07□□□□□ -0.8
LIMS1-201ENST00000332345 RBAKDNA6NC62 111 aa10.06□□□□□ -0.8
LIMS1-201ENST00000332345 ZNF705GA8MUZ8 300 aaPredicted RBP10.06□□□□□ -0.8
LIMS1-201ENST00000332345 H7BYZ3 331 aa10.06□□□□□ -0.8
LIMS1-201ENST00000332345 CXorf1O96002 111 aa10.06□□□□□ -0.8
LIMS1-201ENST00000332345 SLC25A5P05141 298 aaKnown RBP10.06□□□□□ -0.8
LIMS1-201ENST00000332345 ARL14EPLP0DKL9 152 aa10.06□□□□□ -0.8
LIMS1-201ENST00000332345 ARL6IP6Q8N6S5 226 aa10.06□□□□□ -0.8
LIMS1-201ENST00000332345 CMTM2Q8TAZ6 248 aa10.06□□□□□ -0.8
LIMS1-201ENST00000332345 KMT2CQ8NEZ4 4911 aaKnown RBP10.06□□□□□ -0.8
LIMS1-201ENST00000332345 IGKV2-40A0A087WW87 121 aaPredicted RBP10.05□□□□□ -0.8
LIMS1-201ENST00000332345 KANTRA0A1W2PQU2 76 aa10.05□□□□□ -0.8
LIMS1-201ENST00000332345 IGKV2D-40P01614 121 aaPredicted RBP10.05□□□□□ -0.8
LIMS1-201ENST00000332345 NMBP08949 121 aa10.05□□□□□ -0.8
LIMS1-201ENST00000332345 HTN1P15515 57 aa10.05□□□□□ -0.8
LIMS1-201ENST00000332345 GCHFRP30047 84 aa10.05□□□□□ -0.8
LIMS1-201ENST00000332345 GFI1BQ5VTD9 330 aa10.05□□□□□ -0.8
LIMS1-201ENST00000332345 HYLS1Q96M11 299 aa10.05□□□□□ -0.8
LIMS1-201ENST00000332345 VGLL1Q99990 258 aa10.05□□□□□ -0.8
LIMS1-201ENST00000332345 NIPSNAP3BQ9BS92 247 aa10.05□□□□□ -0.8
LIMS1-201ENST00000332345 TMEM167BQ9NRX6 74 aa10.05□□□□□ -0.8
LIMS1-201ENST00000332345 TRAV10A0A0B4J240 114 aa10.04□□□□□ -0.8
LIMS1-201ENST00000332345 DIRC3C9JPN6 131 aa10.04□□□□□ -0.8
LIMS1-201ENST00000332345 J3KRW8 73 aa10.04□□□□□ -0.8
LIMS1-201ENST00000332345 J3QL48 77 aa10.04□□□□□ -0.8
LIMS1-201ENST00000332345 GPX1P07203 203 aa10.04□□□□□ -0.8
LIMS1-201ENST00000332345 ZNF138P52744 262 aa10.04□□□□□ -0.8
LIMS1-201ENST00000332345 EIF5AP63241 154 aaKnown RBP10.04□□□□□ -0.8
LIMS1-201ENST00000332345 KIR3DS1Q14943 382 aa10.04□□□□□ -0.8
LIMS1-201ENST00000332345 C12orf74Q32Q52 190 aa10.04□□□□□ -0.8
LIMS1-201ENST00000332345 FAM222AQ5U5X8 452 aa10.04□□□□□ -0.8
LIMS1-201ENST00000332345 ZNF493Q6ZR52 646 aa10.04□□□□□ -0.8
LIMS1-201ENST00000332345 CCDC28AQ8IWP9 274 aa10.04□□□□□ -0.8
LIMS1-201ENST00000332345 SUN5Q8TC36 379 aa10.04□□□□□ -0.8
LIMS1-201ENST00000332345 C2CD4CQ8TF44 421 aa10.04□□□□□ -0.8
LIMS1-201ENST00000332345 ST6GAL2Q96JF0 529 aa10.04□□□□□ -0.8
LIMS1-201ENST00000332345 FAM19A4Q96LR4 140 aa10.04□□□□□ -0.8
LIMS1-201ENST00000332345 ZNF492Q9P255 531 aa10.04□□□□□ -0.8
LIMS1-201ENST00000332345 DKK2Q9UBU2 259 aa10.04□□□□□ -0.8
LIMS1-201ENST00000332345 CELA1Q9UNI1 258 aa10.04□□□□□ -0.8
LIMS1-201ENST00000332345 YTHDF2Q9Y5A9 579 aaKnown RBP10.04□□□□□ -0.8
LIMS1-201ENST00000332345 TRAV12-3A0A0B4J271 114 aa10.03□□□□□ -0.8
LIMS1-201ENST00000332345 TRBV7-9A0A0J9YWB2 115 aa10.03□□□□□ -0.8
LIMS1-201ENST00000332345 CTXND1A0A1B0GTU2 59 aa10.03□□□□□ -0.8
LIMS1-201ENST00000332345 PRM2P04554 102 aa10.03□□□□□ -0.8
LIMS1-201ENST00000332345 CRISP2P16562 243 aa10.03□□□□□ -0.8
LIMS1-201ENST00000332345 AZU1P20160 251 aa10.03□□□□□ -0.8
LIMS1-201ENST00000332345 Q6ZTC4 211 aa10.03□□□□□ -0.8
LIMS1-201ENST00000332345 TCTE3Q8IZS6 198 aa10.03□□□□□ -0.8
LIMS1-201ENST00000332345 ZNF471Q9BX82 626 aaPredicted RBP10.03□□□□□ -0.8
LIMS1-201ENST00000332345 LYSTQ99698 3801 aa10.02□□□□□ -0.8
LIMS1-201ENST00000332345 LCE6AA0A183 80 aa10.02□□□□□ -0.81
LIMS1-201ENST00000332345 C7orf71A4D174 169 aa10.02□□□□□ -0.81
LIMS1-201ENST00000332345 LYRM9A8MSI8 78 aa10.02□□□□□ -0.81
LIMS1-201ENST00000332345 KLLNB2CW77 178 aa10.02□□□□□ -0.81
LIMS1-201ENST00000332345 BCL2L11O43521 198 aa10.02□□□□□ -0.81
LIMS1-201ENST00000332345 PFDN1O60925 122 aa10.02□□□□□ -0.81
LIMS1-201ENST00000332345 SEC11BP0C7V7 166 aa10.02□□□□□ -0.81
LIMS1-201ENST00000332345 RNASE4P34096 147 aaKnown RBP10.02□□□□□ -0.81
LIMS1-201ENST00000332345 TCTAP57738 103 aa10.02□□□□□ -0.81
LIMS1-201ENST00000332345 TMUB2Q71RG4 321 aa10.02□□□□□ -0.81
LIMS1-201ENST00000332345 IQCF2Q8IXL9 164 aa10.02□□□□□ -0.81
LIMS1-201ENST00000332345 C16orf74Q96GX8 76 aa10.02□□□□□ -0.81
LIMS1-201ENST00000332345 PYGO2Q9BRQ0 406 aa10.02□□□□□ -0.81
LIMS1-201ENST00000332345 LENEPQ9Y5L5 61 aa10.02□□□□□ -0.81
LIMS1-201ENST00000332345 DEFB131BA0A096LNP1 70 aa10.01□□□□□ -0.81
LIMS1-201ENST00000332345 ZNF767PQ75MW2 155 aa10.01□□□□□ -0.81
LIMS1-201ENST00000332345 TMEM263Q8WUH6 116 aaKnown RBP10.01□□□□□ -0.81
LIMS1-201ENST00000332345 TMED6Q8WW62 240 aa10.01□□□□□ -0.81
LIMS1-201ENST00000332345 RPH3ALQ9UNE2 315 aa10.01□□□□□ -0.81
LIMS1-201ENST00000332345 TIMM8BQ9Y5J9 83 aaPredicted RBP10.01□□□□□ -0.81
LIMS1-201ENST00000332345 SERTM2A0A1B0GWG4 89 aa10□□□□□ -0.81
LIMS1-201ENST00000332345 IGLL5B9A064 214 aa10□□□□□ -0.81
LIMS1-201ENST00000332345 UMAD1C9J7I0 102 aa10□□□□□ -0.81
LIMS1-201ENST00000332345 K7EQM0 130 aa10□□□□□ -0.81
LIMS1-201ENST00000332345 ZNF324O75467 553 aaPredicted RBP10□□□□□ -0.81
LIMS1-201ENST00000332345 DAD1P61803 113 aa10□□□□□ -0.81
LIMS1-201ENST00000332345 SUMO1P63165 101 aaKnown RBP10□□□□□ -0.81
LIMS1-201ENST00000332345 CD300CQ08708 224 aa10□□□□□ -0.81
LIMS1-201ENST00000332345 ZNF726P1Q15940 193 aa10□□□□□ -0.81
LIMS1-201ENST00000332345 GOLT1AQ6ZVE7 132 aa10□□□□□ -0.81
LIMS1-201ENST00000332345 SSX7Q7RTT5 188 aa10□□□□□ -0.81
LIMS1-201ENST00000332345 C5orf17Q8NAS9 161 aa10□□□□□ -0.81
LIMS1-201ENST00000332345 STOML3Q8TAV4 291 aa10□□□□□ -0.81
LIMS1-201ENST00000332345 DYNC2H1Q8NCM8 4307 aaKnown RBP9.99□□□□□ -0.81
LIMS1-201ENST00000332345 PLECQ15149 4684 aaKnown RBP9.99□□□□□ -0.81
LIMS1-201ENST00000332345 hCG_2014768A0A024R1R8 64 aa9.99□□□□□ -0.81
LIMS1-201ENST00000332345 A0A1W2PRE2 83 aa9.99□□□□□ -0.81
LIMS1-201ENST00000332345 C1QBP02746 253 aa9.99□□□□□ -0.81
LIMS1-201ENST00000332345 TPT1P13693 172 aaKnown RBP9.99□□□□□ -0.81
LIMS1-201ENST00000332345 BTN1A1Q13410 526 aa9.99□□□□□ -0.81
LIMS1-201ENST00000332345 AKAP14Q86UN6 197 aa9.99□□□□□ -0.81
LIMS1-201ENST00000332345 ZFAND2AQ8N6M9 145 aa9.99□□□□□ -0.81
LIMS1-201ENST00000332345 RNASE8Q8TDE3 154 aaKnown RBP9.99□□□□□ -0.81
LIMS1-201ENST00000332345 NKX6-2Q9C056 277 aaPredicted RBP9.99□□□□□ -0.81
LIMS1-201ENST00000332345 PLAC8L1A1L4L8 177 aa9.98□□□□□ -0.81
LIMS1-201ENST00000332345 SNURFLB1AK76 121 aa9.98□□□□□ -0.81
LIMS1-201ENST00000332345 LGALSLQ3ZCW2 172 aaPredicted RBP9.98□□□□□ -0.81
LIMS1-201ENST00000332345 Q8TAT8 98 aa9.98□□□□□ -0.81
LIMS1-201ENST00000332345 LINC00467Q9BRT7 94 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms