RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 KLF5Q13887 457 aaPredicted RBP12.4□□□□□ -0.43
PDLIM1-201ENST00000329399 FAM24BQ8N5W8 94 aa12.4□□□□□ -0.43
PDLIM1-201ENST00000329399 MCRIP2Q9BUT9 160 aaKnown RBP12.4□□□□□ -0.43
PDLIM1-201ENST00000329399 RHPN1-AS1Q9BWJ2 59 aa12.4□□□□□ -0.43
PDLIM1-201ENST00000329399 ZNF492Q9P255 531 aa12.4□□□□□ -0.43
PDLIM1-201ENST00000329399 APOHP02749 345 aaPredicted RBP12.39□□□□□ -0.43
PDLIM1-201ENST00000329399 SNRPCP09234 159 aaKnown RBP12.39□□□□□ -0.43
PDLIM1-201ENST00000329399 RAB5AP20339 215 aa12.39□□□□□ -0.43
PDLIM1-201ENST00000329399 IBA57Q5T440 356 aaKnown RBP12.39□□□□□ -0.43
PDLIM1-201ENST00000329399 COX8CQ7Z4L0 72 aa12.39□□□□□ -0.43
PDLIM1-201ENST00000329399 LINC00479Q96M42 142 aa12.39□□□□□ -0.43
PDLIM1-201ENST00000329399 PYGO2Q9BRQ0 406 aa12.39□□□□□ -0.43
PDLIM1-201ENST00000329399 PEMTQ9UBM1 199 aa12.39□□□□□ -0.43
PDLIM1-201ENST00000329399 MLXQ9UH92 298 aa12.39□□□□□ -0.43
PDLIM1-201ENST00000329399 PGPEP1LA6NFU8 196 aa12.38□□□□□ -0.43
PDLIM1-201ENST00000329399 ZNF207O43670 478 aaKnown RBP12.38□□□□□ -0.43
PDLIM1-201ENST00000329399 MGST1P10620 155 aaKnown RBP12.38□□□□□ -0.43
PDLIM1-201ENST00000329399 C9orf66Q5T8R8 295 aa12.38□□□□□ -0.43
PDLIM1-201ENST00000329399 LCN12Q6JVE5 192 aa12.38□□□□□ -0.43
PDLIM1-201ENST00000329399 Q86TA4 180 aa12.38□□□□□ -0.43
PDLIM1-201ENST00000329399 NRN1Q9NPD7 142 aa12.38□□□□□ -0.43
PDLIM1-201ENST00000329399 PPP1R14DQ9NXH3 145 aa12.38□□□□□ -0.43
PDLIM1-201ENST00000329399 RPH3ALQ9UNE2 315 aa12.38□□□□□ -0.43
PDLIM1-201ENST00000329399 PSG8Q9UQ74 426 aa12.38□□□□□ -0.43
PDLIM1-201ENST00000329399 TRAV34A0A0B4J273 112 aa12.37□□□□□ -0.43
PDLIM1-201ENST00000329399 IGLV2-11P01706 119 aa12.37□□□□□ -0.43
PDLIM1-201ENST00000329399 SYNJ2BPP57105 145 aa12.37□□□□□ -0.43
PDLIM1-201ENST00000329399 CT83Q5H943 113 aa12.37□□□□□ -0.43
PDLIM1-201ENST00000329399 IL36BQ9NZH7 164 aa12.37□□□□□ -0.43
PDLIM1-201ENST00000329399 ID1P41134 155 aa12.36□□□□□ -0.43
PDLIM1-201ENST00000329399 TM4SF20Q53R12 229 aa12.36□□□□□ -0.43
PDLIM1-201ENST00000329399 OR4B1Q8NGF8 309 aa12.36□□□□□ -0.43
PDLIM1-201ENST00000329399 MRAPQ8TCY5 172 aa12.36□□□□□ -0.43
PDLIM1-201ENST00000329399 DAZAP1Q96EP5 407 aaKnown RBP12.36□□□□□ -0.43
PDLIM1-201ENST00000329399 C16orf92Q96LL3 132 aa12.36□□□□□ -0.43
PDLIM1-201ENST00000329399 PRR25Q96S07 402 aa12.36□□□□□ -0.43
PDLIM1-201ENST00000329399 NDFIP1Q9BT67 221 aa12.36□□□□□ -0.43
PDLIM1-201ENST00000329399 SAP30O75446 220 aa12.35□□□□□ -0.43
PDLIM1-201ENST00000329399 EDN2P20800 178 aa12.35□□□□□ -0.43
PDLIM1-201ENST00000329399 COX19Q49B96 90 aa12.35□□□□□ -0.43
PDLIM1-201ENST00000329399 FAM210BQ96KR6 192 aa12.35□□□□□ -0.43
PDLIM1-201ENST00000329399 LENEPQ9Y5L5 61 aa12.35□□□□□ -0.43
PDLIM1-201ENST00000329399 V9GYV3 84 aa12.35□□□□□ -0.43
PDLIM1-201ENST00000329399 IGHV3-66A0A0C4DH42 116 aa12.34□□□□□ -0.43
PDLIM1-201ENST00000329399 TMEM213A2RRL7 107 aa12.34□□□□□ -0.43
PDLIM1-201ENST00000329399 FAM231BA6NCW3 169 aa12.34□□□□□ -0.43
PDLIM1-201ENST00000329399 C1orf196B1AJZ1 125 aa12.34□□□□□ -0.43
PDLIM1-201ENST00000329399 M0R3E3 92 aa12.34□□□□□ -0.43
PDLIM1-201ENST00000329399 GATCO43716 136 aaKnown RBP12.34□□□□□ -0.43
PDLIM1-201ENST00000329399 TYMSP04818 313 aa12.34□□□□□ -0.43
PDLIM1-201ENST00000329399 ADAMTSL5Q6ZMM2 481 aa12.34□□□□□ -0.43
PDLIM1-201ENST00000329399 PRNTQ86SH4 94 aa12.34□□□□□ -0.43
PDLIM1-201ENST00000329399 URGCP-MRPS24S4R325 110 aa12.34□□□□□ -0.43
PDLIM1-201ENST00000329399 IGHV3OR16-13A0A075B7E8 117 aa12.34□□□□□ -0.43
PDLIM1-201ENST00000329399 IGHV3-74A0A0B4J1X5 117 aa12.34□□□□□ -0.43
PDLIM1-201ENST00000329399 CT45A10P0DMU9 189 aa12.34□□□□□ -0.43
PDLIM1-201ENST00000329399 OR5I1Q13606 314 aa12.34□□□□□ -0.43
PDLIM1-201ENST00000329399 GPR61Q9BZJ8 451 aa12.34□□□□□ -0.43
PDLIM1-201ENST00000329399 IGHV3-49A0A0A0MS15 119 aa12.33□□□□□ -0.44
PDLIM1-201ENST00000329399 TRAV2A0A0B4J234 112 aa12.33□□□□□ -0.44
PDLIM1-201ENST00000329399 TRBV7-9A0A0J9YWB2 115 aa12.33□□□□□ -0.44
PDLIM1-201ENST00000329399 ZNF705GA8MUZ8 300 aaPredicted RBP12.33□□□□□ -0.44
PDLIM1-201ENST00000329399 CSN3P07498 182 aa12.33□□□□□ -0.44
PDLIM1-201ENST00000329399 CBLN1P23435 193 aa12.33□□□□□ -0.44
PDLIM1-201ENST00000329399 FAM3BP58499 235 aaPredicted RBP12.33□□□□□ -0.44
PDLIM1-201ENST00000329399 RAB5BP61020 215 aa12.33□□□□□ -0.44
PDLIM1-201ENST00000329399 PAFAH1B2P68402 229 aa12.33□□□□□ -0.44
PDLIM1-201ENST00000329399 C9orf47Q6ZRZ4 202 aa12.33□□□□□ -0.44
PDLIM1-201ENST00000329399 TCF24Q7RTU0 167 aa12.33□□□□□ -0.44
PDLIM1-201ENST00000329399 LINC00477Q96M19 166 aa12.33□□□□□ -0.44
PDLIM1-201ENST00000329399 GFRA4Q9GZZ7 299 aa12.33□□□□□ -0.44
PDLIM1-201ENST00000329399 SRD5A3Q9H8P0 318 aa12.33□□□□□ -0.44
PDLIM1-201ENST00000329399 TRAV8-2A0A0B4J237 113 aa12.32□□□□□ -0.44
PDLIM1-201ENST00000329399 C19orf71A6NCJ1 209 aa12.32□□□□□ -0.44
PDLIM1-201ENST00000329399 C2orf70A6NJV1 201 aa12.32□□□□□ -0.44
PDLIM1-201ENST00000329399 A8MWL6 223 aa12.32□□□□□ -0.44
PDLIM1-201ENST00000329399 SOCS3O14543 225 aa12.32□□□□□ -0.44
PDLIM1-201ENST00000329399 P01737 135 aa12.32□□□□□ -0.44
PDLIM1-201ENST00000329399 RPL11P62913 178 aaKnown RBP12.32□□□□□ -0.44
PDLIM1-201ENST00000329399 DEFB121Q5J5C9 76 aa12.32□□□□□ -0.44
PDLIM1-201ENST00000329399 GBGT1Q8N5D6 347 aa12.32□□□□□ -0.44
PDLIM1-201ENST00000329399 NUDT10Q8NFP7 164 aa12.32□□□□□ -0.44
PDLIM1-201ENST00000329399 OR9G4Q8NGQ1 327 aa12.32□□□□□ -0.44
PDLIM1-201ENST00000329399 NUDT11Q96G61 164 aa12.32□□□□□ -0.44
PDLIM1-201ENST00000329399 SAV1Q9H4B6 383 aaPredicted RBP12.32□□□□□ -0.44
PDLIM1-201ENST00000329399 TMA7Q9Y2S6 64 aaKnown RBP12.32□□□□□ -0.44
PDLIM1-201ENST00000329399 SELENOKQ9Y6D0 94 aa12.32□□□□□ -0.44
PDLIM1-201ENST00000329399 SMIM27A0A1W2PRY6 76 aa12.31□□□□□ -0.44
PDLIM1-201ENST00000329399 NPIPB6E9PJ23 425 aa12.31□□□□□ -0.44
PDLIM1-201ENST00000329399 RPS10P46783 165 aaKnown RBP12.31□□□□□ -0.44
PDLIM1-201ENST00000329399 TMEM78Q5T7P6 136 aa12.31□□□□□ -0.44
PDLIM1-201ENST00000329399 RNASE7Q9H1E1 156 aaKnown RBP12.31□□□□□ -0.44
PDLIM1-201ENST00000329399 TRAV8-1A0A0A6YYK1 113 aa12.3□□□□□ -0.44
PDLIM1-201ENST00000329399 TGIF2-C20orf24A0A0A6YYL0 155 aa12.3□□□□□ -0.44
PDLIM1-201ENST00000329399 A0A1W2PPQ1 181 aa12.3□□□□□ -0.44
PDLIM1-201ENST00000329399 CXCL1P09341 107 aa12.3□□□□□ -0.44
PDLIM1-201ENST00000329399 INSL3P51460 131 aa12.3□□□□□ -0.44
PDLIM1-201ENST00000329399 RASL11AQ6T310 242 aa12.3□□□□□ -0.44
PDLIM1-201ENST00000329399 TSKUQ8WUA8 353 aa12.3□□□□□ -0.44
PDLIM1-201ENST00000329399 RPP21Q9H633 154 aaKnown RBP12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms