RNA–Protein interactions for RNA: ENST00000311943.11

SCFD1-201, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 2,016 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-201ENST00000311943 CEMP1Q6PRD7 247 aaPredicted RBP8.59□□□□□ -1.03
SCFD1-201ENST00000311943 TVP23CQ96ET8 276 aa8.59□□□□□ -1.03
SCFD1-201ENST00000311943 FAM19A4Q96LR4 140 aa8.59□□□□□ -1.03
SCFD1-201ENST00000311943 AAMDCQ9H7C9 122 aa8.59□□□□□ -1.03
SCFD1-201ENST00000311943 RNF24Q9Y225 148 aa8.59□□□□□ -1.03
SCFD1-201ENST00000311943 GOLT1BQ9Y3E0 138 aa8.59□□□□□ -1.03
SCFD1-201ENST00000311943 GCHFRP30047 84 aa8.58□□□□□ -1.04
SCFD1-201ENST00000311943 UBE2G2P60604 165 aa8.58□□□□□ -1.04
SCFD1-201ENST00000311943 RRN3P1Q2M238 152 aa8.58□□□□□ -1.04
SCFD1-201ENST00000311943 ZFAND2AQ8N6M9 145 aa8.58□□□□□ -1.04
SCFD1-201ENST00000311943 LINC00479Q96M42 142 aa8.58□□□□□ -1.04
SCFD1-201ENST00000311943 ARPC5LQ9BPX5 153 aa8.58□□□□□ -1.04
SCFD1-201ENST00000311943 KMT2AQ03164 3969 aa8.58□□□□□ -1.04
SCFD1-201ENST00000311943 DNAH1Q9P2D7 4330 aa8.58□□□□□ -1.04
SCFD1-201ENST00000311943 BORCS7-ASMTA0A0B4J1R7 106 aa8.58□□□□□ -1.04
SCFD1-201ENST00000311943 GGTLC3B5MD39 225 aa8.58□□□□□ -1.04
SCFD1-201ENST00000311943 DIRC3C9JPN6 131 aa8.58□□□□□ -1.04
SCFD1-201ENST00000311943 HBE1P02100 147 aa8.58□□□□□ -1.04
SCFD1-201ENST00000311943 RNASE4P34096 147 aaKnown RBP8.58□□□□□ -1.04
SCFD1-201ENST00000311943 TMUB2Q71RG4 321 aa8.58□□□□□ -1.04
SCFD1-201ENST00000311943 ZNF471Q9BX82 626 aaPredicted RBP8.58□□□□□ -1.04
SCFD1-201ENST00000311943 DKK2Q9UBU2 259 aa8.58□□□□□ -1.04
SCFD1-201ENST00000311943 HMSDA8MTL9 139 aa8.57□□□□□ -1.04
SCFD1-201ENST00000311943 HTN3P15516 51 aa8.57□□□□□ -1.04
SCFD1-201ENST00000311943 NKX2-5P52952 324 aaPredicted RBP8.57□□□□□ -1.04
SCFD1-201ENST00000311943 TAS2R45P59539 299 aa8.57□□□□□ -1.04
SCFD1-201ENST00000311943 SERF2P84101 59 aa8.57□□□□□ -1.04
SCFD1-201ENST00000311943 GOLT1AQ6ZVE7 132 aa8.57□□□□□ -1.04
SCFD1-201ENST00000311943 NEU1Q99519 415 aa8.57□□□□□ -1.04
SCFD1-201ENST00000311943 IGLL5B9A064 214 aa8.56□□□□□ -1.04
SCFD1-201ENST00000311943 ZNF324O75467 553 aaPredicted RBP8.56□□□□□ -1.04
SCFD1-201ENST00000311943 JTBO76095 146 aa8.56□□□□□ -1.04
SCFD1-201ENST00000311943 C9orf47Q6ZRZ4 202 aa8.56□□□□□ -1.04
SCFD1-201ENST00000311943 TMED6Q8WW62 240 aa8.56□□□□□ -1.04
SCFD1-201ENST00000311943 ZNF492Q9P255 531 aa8.56□□□□□ -1.04
SCFD1-201ENST00000311943 F6UZH7 168 aa8.56□□□□□ -1.04
SCFD1-201ENST00000311943 BCL2L11O43521 198 aa8.56□□□□□ -1.04
SCFD1-201ENST00000311943 DEFB130BP0DP73 79 aa8.56□□□□□ -1.04
SCFD1-201ENST00000311943 DEFB130AP0DP74 79 aa8.56□□□□□ -1.04
SCFD1-201ENST00000311943 SUMO1P63165 101 aaKnown RBP8.56□□□□□ -1.04
SCFD1-201ENST00000311943 ZNF345Q14585 488 aa8.56□□□□□ -1.04
SCFD1-201ENST00000311943 MUC21Q5SSG8 566 aa8.56□□□□□ -1.04
SCFD1-201ENST00000311943 PQLC2Q6ZP29 291 aa8.56□□□□□ -1.04
SCFD1-201ENST00000311943 GNPNAT1Q96EK6 184 aaPredicted RBP8.56□□□□□ -1.04
SCFD1-201ENST00000311943 MRPL53Q96EL3 112 aaKnown RBP8.56□□□□□ -1.04
SCFD1-201ENST00000311943 ACTR3CQ9C0K3 210 aaPredicted RBP8.56□□□□□ -1.04
SCFD1-201ENST00000311943 LCE6AA0A183 80 aa8.55□□□□□ -1.04
SCFD1-201ENST00000311943 KLLNB2CW77 178 aa8.55□□□□□ -1.04
SCFD1-201ENST00000311943 NOP10Q9NPE3 64 aaKnown RBP8.55□□□□□ -1.04
SCFD1-201ENST00000311943 TRAV34A0A0B4J273 112 aa8.54□□□□□ -1.04
SCFD1-201ENST00000311943 TAAR5O14804 337 aa8.54□□□□□ -1.04
SCFD1-201ENST00000311943 SLC25A5P05141 298 aaKnown RBP8.54□□□□□ -1.04
SCFD1-201ENST00000311943 AKR1C8PQ5T2L2 129 aa8.54□□□□□ -1.04
SCFD1-201ENST00000311943 TCTE3Q8IZS6 198 aa8.54□□□□□ -1.04
SCFD1-201ENST00000311943 RNASE8Q8TDE3 154 aaKnown RBP8.54□□□□□ -1.04
SCFD1-201ENST00000311943 C8orf49Q96NF6 230 aa8.54□□□□□ -1.04
SCFD1-201ENST00000311943 OTORQ9NRC9 128 aa8.54□□□□□ -1.04
SCFD1-201ENST00000311943 C7orf71A4D174 169 aa8.54□□□□□ -1.04
SCFD1-201ENST00000311943 GPX1P07203 203 aa8.54□□□□□ -1.04
SCFD1-201ENST00000311943 ZNF138P52744 262 aa8.54□□□□□ -1.04
SCFD1-201ENST00000311943 TMEM78Q5T7P6 136 aa8.54□□□□□ -1.04
SCFD1-201ENST00000311943 SUN5Q8TC36 379 aa8.54□□□□□ -1.04
SCFD1-201ENST00000311943 LINC00477Q96M19 166 aa8.54□□□□□ -1.04
SCFD1-201ENST00000311943 PRELID1Q9Y255 219 aa8.54□□□□□ -1.04
SCFD1-201ENST00000311943 VPS13DQ5THJ4 4388 aa8.53□□□□□ -1.04
SCFD1-201ENST00000311943 ALMS1Q8TCU4 4167 aa8.53□□□□□ -1.04
SCFD1-201ENST00000311943 DEFB131BA0A096LNP1 70 aa8.53□□□□□ -1.04
SCFD1-201ENST00000311943 KANTRA0A1W2PQU2 76 aa8.53□□□□□ -1.04
SCFD1-201ENST00000311943 SMIM9A6NGZ8 99 aa8.53□□□□□ -1.04
SCFD1-201ENST00000311943 LY6G6CO95867 125 aa8.53□□□□□ -1.04
SCFD1-201ENST00000311943 IGLV2-11P01706 119 aa8.53□□□□□ -1.04
SCFD1-201ENST00000311943 SPART-AS1P0CW21 52 aa8.53□□□□□ -1.04
SCFD1-201ENST00000311943 ZNF80P51504 273 aaPredicted RBP8.53□□□□□ -1.04
SCFD1-201ENST00000311943 TAS2R60P59551 318 aa8.53□□□□□ -1.04
SCFD1-201ENST00000311943 CCL20P78556 96 aa8.53□□□□□ -1.04
SCFD1-201ENST00000311943 FAM74A1Q5RGS3 127 aa8.53□□□□□ -1.04
SCFD1-201ENST00000311943 FAM213BQ8TBF2 198 aa8.53□□□□□ -1.04
SCFD1-201ENST00000311943 GSN-AS1Q9NRJ2 163 aa8.53□□□□□ -1.04
SCFD1-201ENST00000311943 A0A0D9SG52 128 aa8.53□□□□□ -1.04
SCFD1-201ENST00000311943 CTXND1A0A1B0GTU2 59 aa8.53□□□□□ -1.04
SCFD1-201ENST00000311943 MAP1LC3B2A6NCE7 125 aa8.53□□□□□ -1.04
SCFD1-201ENST00000311943 NUPR2A6NF83 97 aa8.53□□□□□ -1.04
SCFD1-201ENST00000311943 PFDN1O60925 122 aa8.53□□□□□ -1.04
SCFD1-201ENST00000311943 CXorf1O96002 111 aa8.53□□□□□ -1.04
SCFD1-201ENST00000311943 AMBPP02760 352 aa8.53□□□□□ -1.04
SCFD1-201ENST00000311943 LEPP41159 167 aa8.53□□□□□ -1.04
SCFD1-201ENST00000311943 ATP5G3P48201 142 aa8.53□□□□□ -1.04
SCFD1-201ENST00000311943 AKAP14Q86UN6 197 aa8.53□□□□□ -1.04
SCFD1-201ENST00000311943 LYPD1Q8N2G4 141 aa8.53□□□□□ -1.04
SCFD1-201ENST00000311943 TMEM75Q8N9X5 138 aa8.53□□□□□ -1.04
SCFD1-201ENST00000311943 CMTM2Q8TAZ6 248 aa8.53□□□□□ -1.04
SCFD1-201ENST00000311943 NIPSNAP3BQ9BS92 247 aa8.53□□□□□ -1.04
SCFD1-201ENST00000311943 MAP1LC3BQ9GZQ8 125 aa8.53□□□□□ -1.04
SCFD1-201ENST00000311943 KLF12Q9Y4X4 402 aa8.53□□□□□ -1.04
SCFD1-201ENST00000311943 EPPK1P58107 5090 aaKnown RBP8.52□□□□□ -1.05
SCFD1-201ENST00000311943 H7BYZ3 331 aa8.52□□□□□ -1.05
SCFD1-201ENST00000311943 MBP02144 154 aa8.52□□□□□ -1.05
SCFD1-201ENST00000311943 C1QBP02746 253 aa8.52□□□□□ -1.05
SCFD1-201ENST00000311943 TCRAP04437 139 aa8.52□□□□□ -1.05
SCFD1-201ENST00000311943 CRISP2P16562 243 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms