RNA–Protein interactions for RNA: ENST00000264012.8

CDH3-201, Transcript of cadherin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDH3, Length 4,929 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-201ENST00000264012 TMEM213A2RRL7 107 aa11.13□□□□□ -0.63
CDH3-201ENST00000264012 SYS1-DBNDD2H3BUS1 97 aa11.13□□□□□ -0.63
CDH3-201ENST00000264012 IGHV3-53P01767 116 aa11.13□□□□□ -0.63
CDH3-201ENST00000264012 PRADC1Q9BSG0 188 aa11.13□□□□□ -0.63
CDH3-201ENST00000264012 FNDC4Q9H6D8 234 aaPredicted RBP11.13□□□□□ -0.63
CDH3-201ENST00000264012 TTC32Q5I0X7 151 aa11.13□□□□□ -0.63
CDH3-201ENST00000264012 POLR3KQ9Y2Y1 108 aaPredicted RBP11.13□□□□□ -0.63
CDH3-201ENST00000264012 TRAV2A0A0B4J234 112 aa11.13□□□□□ -0.63
CDH3-201ENST00000264012 C8orf86Q6ZUL3 223 aa11.13□□□□□ -0.63
CDH3-201ENST00000264012 SEM1Q6ZVN7 128 aa11.13□□□□□ -0.63
CDH3-201ENST00000264012 C1QTNF4Q9BXJ3 329 aa11.13□□□□□ -0.63
CDH3-201ENST00000264012 PLNP26678 52 aa11.12□□□□□ -0.63
CDH3-201ENST00000264012 FAM120AOSQ5T036 256 aa11.12□□□□□ -0.63
CDH3-201ENST00000264012 ZNF114Q8NC26 417 aa11.12□□□□□ -0.63
CDH3-201ENST00000264012 SNHG12Q9BXW3 62 aa11.12□□□□□ -0.63
CDH3-201ENST00000264012 LSM4Q9Y4Z0 139 aaKnown RBP11.12□□□□□ -0.63
CDH3-201ENST00000264012 hDV102S1A0JD36 115 aa11.12□□□□□ -0.63
CDH3-201ENST00000264012 IGLC7A0M8Q6 106 aa11.12□□□□□ -0.63
CDH3-201ENST00000264012 J3QLI3 93 aa11.12□□□□□ -0.63
CDH3-201ENST00000264012 NDUFA4O00483 81 aa11.12□□□□□ -0.63
CDH3-201ENST00000264012 RNF114Q9Y508 228 aa11.11□□□□□ -0.63
CDH3-201ENST00000264012 NCOA6Q14686 2063 aaPredicted RBP11.11□□□□□ -0.63
CDH3-201ENST00000264012 A0A0U1RRA0 63 aa11.11□□□□□ -0.63
CDH3-201ENST00000264012 PRR25Q96S07 402 aa11.11□□□□□ -0.63
CDH3-201ENST00000264012 PIEZO1Q92508 2521 aa11.11□□□□□ -0.63
CDH3-201ENST00000264012 GUSBP1Q15486 140 aa11.11□□□□□ -0.63
CDH3-201ENST00000264012 C11orf52Q96A22 123 aa11.11□□□□□ -0.63
CDH3-201ENST00000264012 FXYD5Q96DB9 178 aa11.11□□□□□ -0.63
CDH3-201ENST00000264012 V9GYV3 84 aa11.11□□□□□ -0.63
CDH3-201ENST00000264012 A0A1B0GUS0 222 aa11.11□□□□□ -0.63
CDH3-201ENST00000264012 WISP2O76076 250 aa11.11□□□□□ -0.63
CDH3-201ENST00000264012 TNFRSF6BO95407 300 aa11.11□□□□□ -0.63
CDH3-201ENST00000264012 RIPPLY3P57055 190 aa11.11□□□□□ -0.63
CDH3-201ENST00000264012 FAM231DQ6ZW35 169 aa11.11□□□□□ -0.63
CDH3-201ENST00000264012 SPOCK3Q9BQ16 436 aa11.11□□□□□ -0.63
CDH3-201ENST00000264012 C18orf32Q8TCD1 76 aa11.1□□□□□ -0.63
CDH3-201ENST00000264012 LINC01619G3V211 115 aa11.1□□□□□ -0.63
CDH3-201ENST00000264012 SPINK13Q1W4C9 94 aa11.1□□□□□ -0.63
CDH3-201ENST00000264012 A0A087WX48 190 aa11.1□□□□□ -0.63
CDH3-201ENST00000264012 HOXB4P17483 251 aaPredicted RBP11.1□□□□□ -0.63
CDH3-201ENST00000264012 SSBP2P81877 361 aaPredicted RBP11.1□□□□□ -0.63
CDH3-201ENST00000264012 ZNF491Q8N8L2 437 aa11.1□□□□□ -0.63
CDH3-201ENST00000264012 PRSS46E5RG02 174 aa11.1□□□□□ -0.63
CDH3-201ENST00000264012 MCRIP2Q9BUT9 160 aaKnown RBP11.1□□□□□ -0.63
CDH3-201ENST00000264012 DTX2Q86UW9 622 aa11.09□□□□□ -0.63
CDH3-201ENST00000264012 HOXA3O43365 443 aaPredicted RBP11.09□□□□□ -0.63
CDH3-201ENST00000264012 FAM104BQ5XKR9 115 aa11.09□□□□□ -0.63
CDH3-201ENST00000264012 TEX43Q6ZNM6 134 aa11.09□□□□□ -0.63
CDH3-201ENST00000264012 UBE2DNLQ8IWF7 75 aa11.09□□□□□ -0.63
CDH3-201ENST00000264012 OR11H6Q8NGC7 330 aa11.09□□□□□ -0.63
CDH3-201ENST00000264012 MEGF9Q9H1U4 602 aa11.09□□□□□ -0.63
CDH3-201ENST00000264012 PRO3102Q9H379 93 aa11.09□□□□□ -0.63
CDH3-201ENST00000264012 RBMY1BA6NDE4 496 aaKnown RBP11.09□□□□□ -0.63
CDH3-201ENST00000264012 RBMY1EA6NEQ0 496 aaKnown RBP11.09□□□□□ -0.63
CDH3-201ENST00000264012 RBMY1DP0C7P1 496 aaKnown RBP11.09□□□□□ -0.63
CDH3-201ENST00000264012 RBMY1A1P0DJD3 496 aaKnown RBP11.09□□□□□ -0.63
CDH3-201ENST00000264012 RBMY1CP0DJD4 496 aa11.09□□□□□ -0.63
CDH3-201ENST00000264012 ZC2HC1BQ5TFG8 222 aa11.09□□□□□ -0.63
CDH3-201ENST00000264012 PCDH15Q96QU1 1955 aa11.08□□□□□ -0.64
CDH3-201ENST00000264012 CRPP02741 224 aa11.08□□□□□ -0.64
CDH3-201ENST00000264012 VWC2Q2TAL6 325 aa11.08□□□□□ -0.64
CDH3-201ENST00000264012 XCL2Q9UBD3 114 aa11.08□□□□□ -0.64
CDH3-201ENST00000264012 TCTEX1D4Q5JR98 221 aa11.08□□□□□ -0.64
CDH3-201ENST00000264012 SIGMAR1Q99720 223 aa11.08□□□□□ -0.64
CDH3-201ENST00000264012 OBSL1O75147 1896 aa11.08□□□□□ -0.64
CDH3-201ENST00000264012 MPV17L2Q567V2 206 aa11.08□□□□□ -0.64
CDH3-201ENST00000264012 GAGE1Q13065 139 aa11.07□□□□□ -0.64
CDH3-201ENST00000264012 COX11Q9Y6N1 276 aa11.07□□□□□ -0.64
CDH3-201ENST00000264012 CD5LO43866 347 aa11.07□□□□□ -0.64
CDH3-201ENST00000264012 C1orf159Q96HA4 380 aa11.07□□□□□ -0.64
CDH3-201ENST00000264012 ZNF479Q96JC4 524 aa11.07□□□□□ -0.64
CDH3-201ENST00000264012 ADAMTS9Q9P2N4 1935 aa11.07□□□□□ -0.64
CDH3-201ENST00000264012 ADORA2A-AS1P86434 159 aa11.06□□□□□ -0.64
CDH3-201ENST00000264012 MORN3Q6PF18 240 aaPredicted RBP11.06□□□□□ -0.64
CDH3-201ENST00000264012 BCL6BQ8N143 479 aaPredicted RBP11.06□□□□□ -0.64
CDH3-201ENST00000264012 IGFBPL1Q8WX77 278 aa11.06□□□□□ -0.64
CDH3-201ENST00000264012 PTPN13Q12923 2485 aa11.06□□□□□ -0.64
CDH3-201ENST00000264012 KNCNA6PVL3 124 aa11.06□□□□□ -0.64
CDH3-201ENST00000264012 PLEKHB2Q96CS7 222 aa11.06□□□□□ -0.64
CDH3-201ENST00000264012 SLAQ13239 276 aa11.06□□□□□ -0.64
CDH3-201ENST00000264012 PHLDA1Q8WV24 401 aaPredicted RBP11.06□□□□□ -0.64
CDH3-201ENST00000264012 IGHV4-61A0A0C4DH41 118 aa11.06□□□□□ -0.64
CDH3-201ENST00000264012 SMIM27A0A1W2PRY6 76 aa11.06□□□□□ -0.64
CDH3-201ENST00000264012 ZC2HC1AQ96GY0 325 aa11.06□□□□□ -0.64
CDH3-201ENST00000264012 KLK9Q9UKQ9 250 aa11.06□□□□□ -0.64
CDH3-201ENST00000264012 TMEM238C9JI98 176 aa11.05□□□□□ -0.64
CDH3-201ENST00000264012 COA6Q5JTJ3 125 aaKnown RBP11.05□□□□□ -0.64
CDH3-201ENST00000264012 SAMD5Q5TGI4 173 aa11.05□□□□□ -0.64
CDH3-201ENST00000264012 DEFB130BP0DP73 79 aa11.05□□□□□ -0.64
CDH3-201ENST00000264012 DEFB130AP0DP74 79 aa11.05□□□□□ -0.64
CDH3-201ENST00000264012 A0A087X0K7 114 aa11.05□□□□□ -0.64
CDH3-201ENST00000264012 ELANEP08246 267 aa11.05□□□□□ -0.64
CDH3-201ENST00000264012 VGLL1Q99990 258 aa11.05□□□□□ -0.64
CDH3-201ENST00000264012 CENPVL3A0A0U1RRI6 287 aa11.05□□□□□ -0.64
CDH3-201ENST00000264012 LINC00158P58513 81 aa11.04□□□□□ -0.64
CDH3-201ENST00000264012 DEFB112Q30KQ8 113 aa11.04□□□□□ -0.64
CDH3-201ENST00000264012 TRPT1Q86TN4 253 aaKnown RBP11.04□□□□□ -0.64
CDH3-201ENST00000264012 NCOR2Q9Y618 2525 aa11.04□□□□□ -0.64
CDH3-201ENST00000264012 ZNF106Q9H2Y7 1883 aaKnown RBP11.04□□□□□ -0.64
CDH3-201ENST00000264012 IGHV7-4-1A0A0J9YVY3 117 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms