RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 LGALS9BQ3B8N2 356 aa10.24□□□□□ -0.77
USP40-201ENST00000251722 LGALS9CQ6DKI2 356 aa10.24□□□□□ -0.77
USP40-201ENST00000251722 LRRC75A-AS1Q8N1F1 130 aa10.24□□□□□ -0.77
USP40-201ENST00000251722 ZMAT4Q9H898 229 aa10.24□□□□□ -0.77
USP40-201ENST00000251722 SCN2AQ99250 2005 aa10.24□□□□□ -0.77
USP40-201ENST00000251722 NDUFV3P56181 108 aaKnown RBP10.24□□□□□ -0.77
USP40-201ENST00000251722 TEN1Q86WV5 123 aa10.24□□□□□ -0.77
USP40-201ENST00000251722 LYPD6BQ8NI32 183 aa10.24□□□□□ -0.77
USP40-201ENST00000251722 CEP290O15078 2479 aa10.24□□□□□ -0.77
USP40-201ENST00000251722 ERCC8Q13216 396 aa10.24□□□□□ -0.77
USP40-201ENST00000251722 TRPT1Q86TN4 253 aaKnown RBP10.24□□□□□ -0.77
USP40-201ENST00000251722 ZNF492Q9P255 531 aa10.24□□□□□ -0.77
USP40-201ENST00000251722 VPREB3Q9UKI3 123 aa10.24□□□□□ -0.77
USP40-201ENST00000251722 C15orf62A8K5M9 175 aa10.24□□□□□ -0.77
USP40-201ENST00000251722 M0QXV9 152 aa10.24□□□□□ -0.77
USP40-201ENST00000251722 FHL1Q13642 323 aa10.24□□□□□ -0.77
USP40-201ENST00000251722 BRK1Q8WUW1 75 aa10.24□□□□□ -0.77
USP40-201ENST00000251722 PYGO2Q9BRQ0 406 aa10.24□□□□□ -0.77
USP40-201ENST00000251722 PLXNA2O75051 1894 aa10.24□□□□□ -0.77
USP40-201ENST00000251722 SH2D1AO60880 128 aa10.23□□□□□ -0.77
USP40-201ENST00000251722 TMEM14CQ9P0S9 112 aa10.23□□□□□ -0.77
USP40-201ENST00000251722 ZC2HC1BQ5TFG8 222 aa10.23□□□□□ -0.77
USP40-201ENST00000251722 RUSC1-AS1Q66K80 236 aa10.23□□□□□ -0.77
USP40-201ENST00000251722 TMEM158Q8WZ71 300 aa10.23□□□□□ -0.77
USP40-201ENST00000251722 SH2D6Q7Z4S9 175 aa10.22□□□□□ -0.77
USP40-201ENST00000251722 PHLDA1Q8WV24 401 aaPredicted RBP10.22□□□□□ -0.77
USP40-201ENST00000251722 NLRC5Q86WI3 1866 aa10.22□□□□□ -0.77
USP40-201ENST00000251722 TRAV3A0A0B4J244 114 aa10.22□□□□□ -0.77
USP40-201ENST00000251722 DAD1P61803 113 aa10.22□□□□□ -0.77
USP40-201ENST00000251722 Q6ZR03 302 aa10.22□□□□□ -0.77
USP40-201ENST00000251722 RNF138Q8WVD3 245 aa10.22□□□□□ -0.77
USP40-201ENST00000251722 DNAJC30Q96LL9 226 aa10.22□□□□□ -0.77
USP40-201ENST00000251722 TMEM243Q9BU79 118 aa10.22□□□□□ -0.77
USP40-201ENST00000251722 ZNF876PQ49A33 203 aa10.22□□□□□ -0.77
USP40-201ENST00000251722 ZNF329Q86UD4 541 aa10.22□□□□□ -0.77
USP40-201ENST00000251722 TCF20Q9UGU0 1960 aaKnown RBP10.22□□□□□ -0.77
USP40-201ENST00000251722 SCN8AQ9UQD0 1980 aa10.22□□□□□ -0.77
USP40-201ENST00000251722 ARHGEF17Q96PE2 2063 aaPredicted RBP10.22□□□□□ -0.77
USP40-201ENST00000251722 DEFB131AP59861 70 aa10.22□□□□□ -0.77
USP40-201ENST00000251722 C17orf58Q2M2W7 97 aa10.22□□□□□ -0.77
USP40-201ENST00000251722 NPYP01303 97 aa10.21□□□□□ -0.77
USP40-201ENST00000251722 C1orf195Q5TG92 126 aa10.21□□□□□ -0.77
USP40-201ENST00000251722 PTPRDP23468 1912 aa10.21□□□□□ -0.77
USP40-201ENST00000251722 SPTBP11277 2137 aa10.21□□□□□ -0.77
USP40-201ENST00000251722 A0A087WV48 116 aa10.21□□□□□ -0.77
USP40-201ENST00000251722 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP10.21□□□□□ -0.77
USP40-201ENST00000251722 PLA2G5P39877 138 aa10.21□□□□□ -0.77
USP40-201ENST00000251722 Q6ZUT4 128 aa10.21□□□□□ -0.77
USP40-201ENST00000251722 VSIRQ9H7M9 311 aa10.21□□□□□ -0.77
USP40-201ENST00000251722 SHISA9B4DS77 424 aa10.21□□□□□ -0.78
USP40-201ENST00000251722 HEATR5BQ9P2D3 2071 aa10.21□□□□□ -0.78
USP40-201ENST00000251722 UQCRQO14949 82 aa10.21□□□□□ -0.78
USP40-201ENST00000251722 C12orf74Q32Q52 190 aa10.21□□□□□ -0.78
USP40-201ENST00000251722 SMIM9A6NGZ8 99 aa10.2□□□□□ -0.78
USP40-201ENST00000251722 NTF4P34130 210 aa10.2□□□□□ -0.78
USP40-201ENST00000251722 Q86TA4 180 aa10.2□□□□□ -0.78
USP40-201ENST00000251722 HLA-DMBP28068 263 aa10.2□□□□□ -0.78
USP40-201ENST00000251722 C9orf66Q5T8R8 295 aa10.2□□□□□ -0.78
USP40-201ENST00000251722 EXOC3-AS1Q8N2X6 119 aa10.2□□□□□ -0.78
USP40-201ENST00000251722 CRYGCP07315 174 aa10.2□□□□□ -0.78
USP40-201ENST00000251722 FOXE3Q13461 319 aa10.2□□□□□ -0.78
USP40-201ENST00000251722 NEGR1Q7Z3B1 354 aa10.2□□□□□ -0.78
USP40-201ENST00000251722 MRPL53Q96EL3 112 aaKnown RBP10.2□□□□□ -0.78
USP40-201ENST00000251722 TRAV8-3A0A0A6YYJ7 113 aa10.19□□□□□ -0.78
USP40-201ENST00000251722 LYZL1Q6UWQ5 148 aa10.19□□□□□ -0.78
USP40-201ENST00000251722 TMEM89A2RUT3 159 aa10.19□□□□□ -0.78
USP40-201ENST00000251722 FBXL19-AS1Q494R0 122 aa10.19□□□□□ -0.78
USP40-201ENST00000251722 RNF152Q8N8N0 203 aa10.19□□□□□ -0.78
USP40-201ENST00000251722 FAM236AA0A1B0GUQ0 79 aa10.19□□□□□ -0.78
USP40-201ENST00000251722 FAM236BA0A1B0GV22 79 aa10.19□□□□□ -0.78
USP40-201ENST00000251722 C5orf63A6NC05 138 aa10.19□□□□□ -0.78
USP40-201ENST00000251722 NDPQ00604 133 aa10.19□□□□□ -0.78
USP40-201ENST00000251722 RPP25LQ8N5L8 163 aaKnown RBP10.19□□□□□ -0.78
USP40-201ENST00000251722 IGLL5B9A064 214 aa10.18□□□□□ -0.78
USP40-201ENST00000251722 LY6HO94772 140 aa10.18□□□□□ -0.78
USP40-201ENST00000251722 IGLV3-1P01715 115 aa10.18□□□□□ -0.78
USP40-201ENST00000251722 IGKV1-16P04430 117 aa10.18□□□□□ -0.78
USP40-201ENST00000251722 LINC00158P58513 81 aa10.18□□□□□ -0.78
USP40-201ENST00000251722 NTN5Q8WTR8 489 aaPredicted RBP10.18□□□□□ -0.78
USP40-201ENST00000251722 MYMXA0A1B0GTQ4 84 aa10.18□□□□□ -0.78
USP40-201ENST00000251722 AMTNQ6UX39 209 aa10.18□□□□□ -0.78
USP40-201ENST00000251722 VWC2LB2RUY7 222 aa10.18□□□□□ -0.78
USP40-201ENST00000251722 C15orf65H3BRN8 121 aa10.17□□□□□ -0.78
USP40-201ENST00000251722 VOPP1Q96AW1 172 aa10.17□□□□□ -0.78
USP40-201ENST00000251722 TMEM141Q96I45 108 aa10.17□□□□□ -0.78
USP40-201ENST00000251722 IGHV1OR15-1A0A075B7D0 117 aa10.17□□□□□ -0.78
USP40-201ENST00000251722 IGHV7-4-1A0A0J9YVY3 117 aa10.17□□□□□ -0.78
USP40-201ENST00000251722 WFDC2Q14508 124 aa10.17□□□□□ -0.78
USP40-201ENST00000251722 LY6G5BQ8NDX9 201 aa10.17□□□□□ -0.78
USP40-201ENST00000251722 F8WEM9 126 aa10.17□□□□□ -0.78
USP40-201ENST00000251722 SOCS3O14543 225 aa10.17□□□□□ -0.78
USP40-201ENST00000251722 JPT2Q9H910 190 aa10.17□□□□□ -0.78
USP40-201ENST00000251722 TRBV25-1A0A075B6N4 114 aa10.17□□□□□ -0.78
USP40-201ENST00000251722 H3BRN7 92 aa10.16□□□□□ -0.78
USP40-201ENST00000251722 HOXB4P17483 251 aaPredicted RBP10.16□□□□□ -0.78
USP40-201ENST00000251722 THAP8Q8NA92 274 aa10.16□□□□□ -0.78
USP40-201ENST00000251722 PRO1854Q9UHT4 67 aa10.16□□□□□ -0.78
USP40-201ENST00000251722 LIME1Q9H400 295 aa10.16□□□□□ -0.78
USP40-201ENST00000251722 SCRT2Q9NQ03 307 aa10.16□□□□□ -0.78
USP40-201ENST00000251722 LENEPQ9Y5L5 61 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms