RNA–Protein interactions for RNA: ENST00000243082.4

HOXC11-201, Transcript of homeobox C11, humanhuman

TSL 3 BASIC

Gene HOXC11, Length 2,039 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-201ENST00000243082 CREBBPQ92793 2442 aa14.12□□□□□ -0.15
HOXC11-201ENST00000243082 DOPEY2Q9Y3R5 2298 aa14.12□□□□□ -0.15
HOXC11-201ENST00000243082 PRR31Q5SQ13 230 aa14.12□□□□□ -0.15
HOXC11-201ENST00000243082 MRPL53Q96EL3 112 aaKnown RBP14.12□□□□□ -0.15
HOXC11-201ENST00000243082 RCHY1Q96PM5 261 aa14.12□□□□□ -0.15
HOXC11-201ENST00000243082 PSMG3-AS1Q96PY0 264 aa14.12□□□□□ -0.15
HOXC11-201ENST00000243082 PRDM13Q9H4Q3 707 aa14.12□□□□□ -0.15
HOXC11-201ENST00000243082 PAFAH1B2P68402 229 aa14.11□□□□□ -0.15
HOXC11-201ENST00000243082 ALKBH7Q9BT30 221 aaPredicted RBP14.11□□□□□ -0.15
HOXC11-201ENST00000243082 ZNF469Q96JG9 3925 aaPredicted RBP14.11□□□□□ -0.15
HOXC11-201ENST00000243082 HOXA3O43365 443 aaPredicted RBP14.1□□□□□ -0.15
HOXC11-201ENST00000243082 GPHB5Q86YW7 130 aa14.1□□□□□ -0.15
HOXC11-201ENST00000243082 C18orf32Q8TCD1 76 aa14.1□□□□□ -0.15
HOXC11-201ENST00000243082 PEF1Q9UBV8 284 aaKnown RBP14.1□□□□□ -0.15
HOXC11-201ENST00000243082 TMEM89A2RUT3 159 aa14.1□□□□□ -0.15
HOXC11-201ENST00000243082 TMEM189A5PLL7 270 aa14.1□□□□□ -0.15
HOXC11-201ENST00000243082 J3QKU1 62 aa14.1□□□□□ -0.15
HOXC11-201ENST00000243082 ARMS2P0C7Q2 107 aa14.1□□□□□ -0.15
HOXC11-201ENST00000243082 A0A1B0GUT8 65 aa14.09□□□□□ -0.15
HOXC11-201ENST00000243082 KLF5Q13887 457 aaPredicted RBP14.09□□□□□ -0.15
HOXC11-201ENST00000243082 IQCJQ1A5X6 159 aa14.09□□□□□ -0.15
HOXC11-201ENST00000243082 AGPAT4-IT1Q9H0P7 198 aa14.09□□□□□ -0.15
HOXC11-201ENST00000243082 ZNF575Q86XF7 245 aa14.08□□□□□ -0.15
HOXC11-201ENST00000243082 WFDC11Q8NEX6 87 aa14.08□□□□□ -0.15
HOXC11-201ENST00000243082 C16orf92Q96LL3 132 aa14.08□□□□□ -0.15
HOXC11-201ENST00000243082 NDFIP1Q9BT67 221 aa14.08□□□□□ -0.15
HOXC11-201ENST00000243082 ZNF702PQ9H963 129 aa14.08□□□□□ -0.15
HOXC11-201ENST00000243082 A0A1W2PS18 150 aa14.08□□□□□ -0.16
HOXC11-201ENST00000243082 BMI1P35226 326 aa14.08□□□□□ -0.16
HOXC11-201ENST00000243082 TM4SF20Q53R12 229 aa14.08□□□□□ -0.16
HOXC11-201ENST00000243082 Q6AWC8 147 aa14.08□□□□□ -0.16
HOXC11-201ENST00000243082 CLEC5AQ9NY25 188 aa14.08□□□□□ -0.16
HOXC11-201ENST00000243082 TMSB15BA0A087X1C1 80 aa14.07□□□□□ -0.16
HOXC11-201ENST00000243082 IGHV7-4-1A0A0J9YVY3 117 aa14.07□□□□□ -0.16
HOXC11-201ENST00000243082 IL17RELQ6ZVW7 336 aa14.07□□□□□ -0.16
HOXC11-201ENST00000243082 KCNS1Q96KK3 526 aa14.07□□□□□ -0.16
HOXC11-201ENST00000243082 C20orf173Q96LM9 149 aa14.07□□□□□ -0.16
HOXC11-201ENST00000243082 SOCS3O14543 225 aa14.07□□□□□ -0.16
HOXC11-201ENST00000243082 GPX1P07203 203 aa14.07□□□□□ -0.16
HOXC11-201ENST00000243082 RIGQ13278 110 aa14.07□□□□□ -0.16
HOXC11-201ENST00000243082 Q6ZWC4 215 aa14.07□□□□□ -0.16
HOXC11-201ENST00000243082 DAZ1Q9NQZ3 744 aaKnown RBP14.07□□□□□ -0.16
HOXC11-201ENST00000243082 RPLP1P05386 114 aaKnown RBP14.06□□□□□ -0.16
HOXC11-201ENST00000243082 C9orf47Q6ZRZ4 202 aa14.06□□□□□ -0.16
HOXC11-201ENST00000243082 GATD1Q8NB37 220 aa14.06□□□□□ -0.16
HOXC11-201ENST00000243082 RHPN1-AS1Q9BWJ2 59 aa14.06□□□□□ -0.16
HOXC11-201ENST00000243082 SAMD10Q9BYL1 202 aa14.06□□□□□ -0.16
HOXC11-201ENST00000243082 FABP5P3A8MUU1 101 aa14.05□□□□□ -0.16
HOXC11-201ENST00000243082 ZNF138P52744 262 aa14.05□□□□□ -0.16
HOXC11-201ENST00000243082 SRSF2Q01130 221 aaKnown RBP14.05□□□□□ -0.16
HOXC11-201ENST00000243082 LYZL1Q6UWQ5 148 aa14.05□□□□□ -0.16
HOXC11-201ENST00000243082 TPPP3Q9BW30 176 aa14.05□□□□□ -0.16
HOXC11-201ENST00000243082 ITPR3Q14573 2671 aa14.05□□□□□ -0.16
HOXC11-201ENST00000243082 K7EMT4 169 aa14.05□□□□□ -0.16
HOXC11-201ENST00000243082 FAM106AQ4KMX7 169 aa14.05□□□□□ -0.16
HOXC11-201ENST00000243082 TMEM78Q5T7P6 136 aa14.05□□□□□ -0.16
HOXC11-201ENST00000243082 SMPXQ9UHP9 88 aa14.05□□□□□ -0.16
HOXC11-201ENST00000243082 LOC102724200A0A096LPH7 203 aaPredicted RBP14.04□□□□□ -0.16
HOXC11-201ENST00000243082 A0A1B0GW15 77 aa14.04□□□□□ -0.16
HOXC11-201ENST00000243082 LINC00587B1AMM8 73 aa14.04□□□□□ -0.16
HOXC11-201ENST00000243082 CD33P20138 364 aa14.04□□□□□ -0.16
HOXC11-201ENST00000243082 PPP1R14DQ9NXH3 145 aa14.04□□□□□ -0.16
HOXC11-201ENST00000243082 EDN2P20800 178 aa14.03□□□□□ -0.16
HOXC11-201ENST00000243082 RPS20P60866 119 aaKnown RBP14.03□□□□□ -0.16
HOXC11-201ENST00000243082 FOXE3Q13461 319 aa14.03□□□□□ -0.16
HOXC11-201ENST00000243082 SIGLECL1Q8N7X8 197 aa14.03□□□□□ -0.16
HOXC11-201ENST00000243082 MYOZ3Q8TDC0 251 aa14.03□□□□□ -0.16
HOXC11-201ENST00000243082 NRN1Q9NPD7 142 aa14.03□□□□□ -0.16
HOXC11-201ENST00000243082 ZNF324O75467 553 aaPredicted RBP14.03□□□□□ -0.16
HOXC11-201ENST00000243082 ELANEP08246 267 aa14.02□□□□□ -0.16
HOXC11-201ENST00000243082 AMTP48728 403 aa14.02□□□□□ -0.16
HOXC11-201ENST00000243082 ZNF738Q8NE65 137 aa14.02□□□□□ -0.16
HOXC11-201ENST00000243082 DUX5Q96PT3 197 aa14.02□□□□□ -0.16
HOXC11-201ENST00000243082 PDZD2O15018 2839 aa14.02□□□□□ -0.17
HOXC11-201ENST00000243082 ORM1P02763 201 aa14.02□□□□□ -0.17
HOXC11-201ENST00000243082 IGLC6P0CF74 106 aa14.02□□□□□ -0.17
HOXC11-201ENST00000243082 ZNF705DP0CH99 300 aaPredicted RBP14.02□□□□□ -0.17
HOXC11-201ENST00000243082 ZNF705BP0CI00 300 aaPredicted RBP14.02□□□□□ -0.17
HOXC11-201ENST00000243082 PMCHP20382 165 aa14.02□□□□□ -0.17
HOXC11-201ENST00000243082 RPL11P62913 178 aaKnown RBP14.02□□□□□ -0.17
HOXC11-201ENST00000243082 LINC01559Q495D7 138 aa14.02□□□□□ -0.17
HOXC11-201ENST00000243082 ZNF493Q6ZR52 646 aa14.02□□□□□ -0.17
HOXC11-201ENST00000243082 BORCS7Q96B45 105 aa14.02□□□□□ -0.17
HOXC11-201ENST00000243082 SCGB1D1O95968 90 aa14.01□□□□□ -0.17
HOXC11-201ENST00000243082 Q8N2B8 174 aa14.01□□□□□ -0.17
HOXC11-201ENST00000243082 FAM19A2Q8N3H0 131 aa14.01□□□□□ -0.17
HOXC11-201ENST00000243082 URB1-AS1Q96HZ7 61 aa14.01□□□□□ -0.17
HOXC11-201ENST00000243082 RNF114Q9Y508 228 aa14.01□□□□□ -0.17
HOXC11-201ENST00000243082 CTRLP40313 264 aa14□□□□□ -0.17
HOXC11-201ENST00000243082 FER1L6-AS1Q8NA97 138 aa14□□□□□ -0.17
HOXC11-201ENST00000243082 NAGKQ9UJ70 344 aa14□□□□□ -0.17
HOXC11-201ENST00000243082 SELENOKQ9Y6D0 94 aa14□□□□□ -0.17
HOXC11-201ENST00000243082 HELZ2Q9BYK8 2649 aaKnown RBP14□□□□□ -0.17
HOXC11-201ENST00000243082 TMEM213A2RRL7 107 aa14□□□□□ -0.17
HOXC11-201ENST00000243082 NIT1Q86X76 327 aa14□□□□□ -0.17
HOXC11-201ENST00000243082 RNF152Q8N8N0 203 aa14□□□□□ -0.17
HOXC11-201ENST00000243082 C11orf21Q9P2W6 132 aa14□□□□□ -0.17
HOXC11-201ENST00000243082 UFC1Q9Y3C8 167 aa14□□□□□ -0.17
HOXC11-201ENST00000243082 IGKV3-7A0A075B6H7 116 aa13.99□□□□□ -0.17
HOXC11-201ENST00000243082 MUC21A0A0G2JKD1 596 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms