RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 LEMD1Q68G75 181 aa7.33□□□□□ -1.24
CLN3-261ENST00000637686 LINC00322Q6ZN03 302 aaPredicted RBP7.33□□□□□ -1.24
CLN3-261ENST00000637686 COMMD7Q86VX2 200 aa7.33□□□□□ -1.24
CLN3-261ENST00000637686 CCDC28AQ8IWP9 274 aa7.33□□□□□ -1.24
CLN3-261ENST00000637686 MRPL53Q96EL3 112 aaKnown RBP7.33□□□□□ -1.24
CLN3-261ENST00000637686 CITED4Q96RK1 184 aa7.33□□□□□ -1.24
CLN3-261ENST00000637686 MS4A6AQ9H2W1 248 aa7.33□□□□□ -1.24
CLN3-261ENST00000637686 OTORQ9NRC9 128 aa7.33□□□□□ -1.24
CLN3-261ENST00000637686 ZNF586Q9NXT0 402 aa7.33□□□□□ -1.24
CLN3-261ENST00000637686 GNG13Q9P2W3 67 aa7.33□□□□□ -1.24
CLN3-261ENST00000637686 HUWE1Q7Z6Z7 4374 aaKnown RBP7.32□□□□□ -1.24
CLN3-261ENST00000637686 COL7A1Q02388 2944 aa7.32□□□□□ -1.24
CLN3-261ENST00000637686 SERTM2A0A1B0GWG4 89 aa7.32□□□□□ -1.24
CLN3-261ENST00000637686 F6UZH7 168 aa7.32□□□□□ -1.24
CLN3-261ENST00000637686 H3BQ15 152 aa7.32□□□□□ -1.24
CLN3-261ENST00000637686 OR10J4P0C629 311 aa7.32□□□□□ -1.24
CLN3-261ENST00000637686 ICAM4Q14773 271 aa7.32□□□□□ -1.24
CLN3-261ENST00000637686 TOR2AQ5JU69 321 aa7.32□□□□□ -1.24
CLN3-261ENST00000637686 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.32□□□□□ -1.24
CLN3-261ENST00000637686 IQCF2Q8IXL9 164 aa7.32□□□□□ -1.24
CLN3-261ENST00000637686 C11orf52Q96A22 123 aa7.32□□□□□ -1.24
CLN3-261ENST00000637686 RPUSD4Q96CM3 377 aaKnown RBP7.32□□□□□ -1.24
CLN3-261ENST00000637686 TMPRSS5Q9H3S3 457 aa7.32□□□□□ -1.24
CLN3-261ENST00000637686 NRN1Q9NPD7 142 aa7.32□□□□□ -1.24
CLN3-261ENST00000637686 U3KQK5 164 aa7.32□□□□□ -1.24
CLN3-261ENST00000637686 A0A1B0GV50 99 aa7.31□□□□□ -1.24
CLN3-261ENST00000637686 FBLL1A6NHQ2 334 aaKnown RBP7.31□□□□□ -1.24
CLN3-261ENST00000637686 C11orf94C9JXX5 98 aa7.31□□□□□ -1.24
CLN3-261ENST00000637686 ISLRO14498 428 aa7.31□□□□□ -1.24
CLN3-261ENST00000637686 PAGE4O60829 102 aa7.31□□□□□ -1.24
CLN3-261ENST00000637686 EIF3GO75821 320 aaKnown RBP eCLIP7.31□□□□□ -1.24
CLN3-261ENST00000637686 NDUFB4O95168 129 aa7.31□□□□□ -1.24
CLN3-261ENST00000637686 CMC4P56277 68 aaPredicted RBP7.31□□□□□ -1.24
CLN3-261ENST00000637686 ZNF124Q15973 351 aa7.31□□□□□ -1.24
CLN3-261ENST00000637686 APRG1Q8IVJ8 170 aa7.31□□□□□ -1.24
CLN3-261ENST00000637686 FAM24BQ8N5W8 94 aa7.31□□□□□ -1.24
CLN3-261ENST00000637686 C5orf17Q8NAS9 161 aa7.31□□□□□ -1.24
CLN3-261ENST00000637686 RXFP4Q8TDU9 374 aa7.31□□□□□ -1.24
CLN3-261ENST00000637686 HIST1H2BAQ96A08 127 aa7.31□□□□□ -1.24
CLN3-261ENST00000637686 C17orf77Q96MU5 243 aa7.31□□□□□ -1.24
CLN3-261ENST00000637686 TM2D3Q9BRN9 247 aa7.31□□□□□ -1.24
CLN3-261ENST00000637686 EIF5A2Q9GZV4 153 aaKnown RBP7.31□□□□□ -1.24
CLN3-261ENST00000637686 AAMDCQ9H7C9 122 aa7.31□□□□□ -1.24
CLN3-261ENST00000637686 ZMAT4Q9H898 229 aa7.31□□□□□ -1.24
CLN3-261ENST00000637686 MAP6D1Q9H9H5 199 aa7.31□□□□□ -1.24
CLN3-261ENST00000637686 ZNF331Q9NQX6 463 aaPredicted RBP7.31□□□□□ -1.24
CLN3-261ENST00000637686 YTHDF2Q9Y5A9 579 aaKnown RBP7.31□□□□□ -1.24
CLN3-261ENST00000637686 LOC102724200A0A096LPH7 203 aaPredicted RBP7.3□□□□□ -1.24
CLN3-261ENST00000637686 GGTLC3B5MD39 225 aa7.3□□□□□ -1.24
CLN3-261ENST00000637686 K7EQG2 157 aa7.3□□□□□ -1.24
CLN3-261ENST00000637686 SOCS3O14543 225 aa7.3□□□□□ -1.24
CLN3-261ENST00000637686 ID1P41134 155 aa7.3□□□□□ -1.24
CLN3-261ENST00000637686 DEFB131AP59861 70 aa7.3□□□□□ -1.24
CLN3-261ENST00000637686 CST9LP1Q5W188 147 aa7.3□□□□□ -1.24
CLN3-261ENST00000637686 DCANP1Q8TF63 244 aa7.3□□□□□ -1.24
CLN3-261ENST00000637686 RCHY1Q96PM5 261 aa7.3□□□□□ -1.24
CLN3-261ENST00000637686 FAM110AQ9BQ89 295 aa7.3□□□□□ -1.24
CLN3-261ENST00000637686 SLC35B3Q9H1N7 401 aa7.3□□□□□ -1.24
CLN3-261ENST00000637686 Q9H3A6 140 aa7.3□□□□□ -1.24
CLN3-261ENST00000637686 SLC25A5P05141 298 aaKnown RBP7.29□□□□□ -1.24
CLN3-261ENST00000637686 S100A9P06702 114 aaKnown RBP7.29□□□□□ -1.24
CLN3-261ENST00000637686 SRP19P09132 144 aaKnown RBP7.29□□□□□ -1.24
CLN3-261ENST00000637686 RPL35AP18077 110 aaKnown RBP7.29□□□□□ -1.24
CLN3-261ENST00000637686 UBE2G2P60604 165 aa7.29□□□□□ -1.24
CLN3-261ENST00000637686 RANP62826 216 aaKnown RBP7.29□□□□□ -1.24
CLN3-261ENST00000637686 FAM74A3Q4VXF1 159 aa7.29□□□□□ -1.24
CLN3-261ENST00000637686 BLNKQ8WV28 456 aa7.29□□□□□ -1.24
CLN3-261ENST00000637686 RARRES2Q99969 163 aa7.29□□□□□ -1.24
CLN3-261ENST00000637686 SPATA25Q9BR10 227 aa7.29□□□□□ -1.24
CLN3-261ENST00000637686 RETNQ9HD89 108 aa7.29□□□□□ -1.24
CLN3-261ENST00000637686 TRBV6-1A0A0K0K1D8 114 aa7.28□□□□□ -1.24
CLN3-261ENST00000637686 RBAKDNA6NC62 111 aa7.28□□□□□ -1.24
CLN3-261ENST00000637686 KRBOX1C9JBD0 128 aa7.28□□□□□ -1.24
CLN3-261ENST00000637686 SLC17A3O00476 420 aa7.28□□□□□ -1.24
CLN3-261ENST00000637686 ZNF688P0C7X2 276 aa7.28□□□□□ -1.24
CLN3-261ENST00000637686 CSN1S1P47710 185 aa7.28□□□□□ -1.24
CLN3-261ENST00000637686 ATP5G3P48201 142 aa7.28□□□□□ -1.24
CLN3-261ENST00000637686 SUMO1P63165 101 aaKnown RBP7.28□□□□□ -1.24
CLN3-261ENST00000637686 CMTM2Q8TAZ6 248 aa7.28□□□□□ -1.24
CLN3-261ENST00000637686 C16orf92Q96LL3 132 aa7.28□□□□□ -1.24
CLN3-261ENST00000637686 ATG101Q9BSB4 218 aa7.28□□□□□ -1.24
CLN3-261ENST00000637686 TREM1Q9NP99 234 aa7.28□□□□□ -1.24
CLN3-261ENST00000637686 EPDR1Q9UM22 224 aa7.28□□□□□ -1.24
CLN3-261ENST00000637686 KLF12Q9Y4X4 402 aa7.28□□□□□ -1.24
CLN3-261ENST00000637686 TRAV8-2A0A0B4J237 113 aa7.27□□□□□ -1.25
CLN3-261ENST00000637686 TMEM218A2RU14 115 aa7.27□□□□□ -1.25
CLN3-261ENST00000637686 PGPA6NDG6 321 aa7.27□□□□□ -1.25
CLN3-261ENST00000637686 K7EQM0 130 aa7.27□□□□□ -1.25
CLN3-261ENST00000637686 TCRAP04437 139 aa7.27□□□□□ -1.25
CLN3-261ENST00000637686 SNRPD3P62318 126 aaKnown RBP7.27□□□□□ -1.25
CLN3-261ENST00000637686 PSG3Q16557 428 aa7.27□□□□□ -1.25
CLN3-261ENST00000637686 CYB561D1Q8N8Q1 229 aa7.27□□□□□ -1.25
CLN3-261ENST00000637686 C2CD4CQ8TF44 421 aa7.27□□□□□ -1.25
CLN3-261ENST00000637686 SMIM12Q96EX1 92 aa7.27□□□□□ -1.25
CLN3-261ENST00000637686 SEC11CQ9BY50 192 aa7.27□□□□□ -1.25
CLN3-261ENST00000637686 PPP1R14DQ9NXH3 145 aa7.27□□□□□ -1.25
CLN3-261ENST00000637686 TRBV7-9A0A0J9YWB2 115 aa7.26□□□□□ -1.25
CLN3-261ENST00000637686 KNCNA6PVL3 124 aa7.26□□□□□ -1.25
CLN3-261ENST00000637686 C9JCJ5 164 aa7.26□□□□□ -1.25
CLN3-261ENST00000637686 DIRC3C9JPN6 131 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms