RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 H3BTX0 84 aa13.91□□□□□ -0.18
CLN3-260ENST00000637578 MBP02144 154 aa13.91□□□□□ -0.18
CLN3-260ENST00000637578 PYYP10082 97 aa13.91□□□□□ -0.18
CLN3-260ENST00000637578 RPP25LQ8N5L8 163 aaKnown RBP13.91□□□□□ -0.18
CLN3-260ENST00000637578 C16orf92Q96LL3 132 aa13.91□□□□□ -0.18
CLN3-260ENST00000637578 A0A0J9YX75 114 aa13.9□□□□□ -0.18
CLN3-260ENST00000637578 ZNF705AQ6ZN79 300 aaPredicted RBP13.9□□□□□ -0.18
CLN3-260ENST00000637578 LINC00476Q8WZB0 136 aa13.9□□□□□ -0.18
CLN3-260ENST00000637578 RPRMQ9NS64 109 aa13.9□□□□□ -0.18
CLN3-260ENST00000637578 A0A1W2PPV4 95 aa13.89□□□□□ -0.19
CLN3-260ENST00000637578 A8MTW9 85 aa13.89□□□□□ -0.19
CLN3-260ENST00000637578 TPT1P13693 172 aaKnown RBP13.89□□□□□ -0.19
CLN3-260ENST00000637578 EIF5AP63241 154 aaKnown RBP13.89□□□□□ -0.19
CLN3-260ENST00000637578 IGFL4Q6B9Z1 124 aa13.89□□□□□ -0.19
CLN3-260ENST00000637578 BAP18Q8IXM2 172 aa13.89□□□□□ -0.19
CLN3-260ENST00000637578 STOML3Q8TAV4 291 aa13.89□□□□□ -0.19
CLN3-260ENST00000637578 TRAV8-2A0A0B4J237 113 aa13.88□□□□□ -0.19
CLN3-260ENST00000637578 F6UB75 175 aa13.88□□□□□ -0.19
CLN3-260ENST00000637578 SLC17A3O00476 420 aa13.88□□□□□ -0.19
CLN3-260ENST00000637578 OR7C2O60412 319 aa13.88□□□□□ -0.19
CLN3-260ENST00000637578 CDC34P49427 236 aaPredicted RBP13.88□□□□□ -0.19
CLN3-260ENST00000637578 TAS2R45P59539 299 aa13.88□□□□□ -0.19
CLN3-260ENST00000637578 KHDC3LQ587J8 217 aa13.88□□□□□ -0.19
CLN3-260ENST00000637578 AKR1C8PQ5T2L2 129 aa13.88□□□□□ -0.19
CLN3-260ENST00000637578 LCN15Q6UWW0 184 aa13.88□□□□□ -0.19
CLN3-260ENST00000637578 ZNF503Q96F45 646 aa13.88□□□□□ -0.19
CLN3-260ENST00000637578 NEU1Q99519 415 aa13.88□□□□□ -0.19
CLN3-260ENST00000637578 PAXXQ9BUH6 204 aa13.88□□□□□ -0.19
CLN3-260ENST00000637578 OR51M1Q9H341 326 aa13.88□□□□□ -0.19
CLN3-260ENST00000637578 ZNF586Q9NXT0 402 aa13.88□□□□□ -0.19
CLN3-260ENST00000637578 ZNF705FA8MVS1 300 aaPredicted RBP13.88□□□□□ -0.19
CLN3-260ENST00000637578 HMGB3O15347 200 aaKnown RBP13.88□□□□□ -0.19
CLN3-260ENST00000637578 OR10J4P0C629 311 aa13.88□□□□□ -0.19
CLN3-260ENST00000637578 SEC11BP0C7V7 166 aa13.88□□□□□ -0.19
CLN3-260ENST00000637578 ZNF705DP0CH99 300 aaPredicted RBP13.88□□□□□ -0.19
CLN3-260ENST00000637578 ZNF705BP0CI00 300 aaPredicted RBP13.88□□□□□ -0.19
CLN3-260ENST00000637578 HIST1H1EP10412 219 aaKnown RBP13.88□□□□□ -0.19
CLN3-260ENST00000637578 EBLN2Q6P2I7 272 aa13.88□□□□□ -0.19
CLN3-260ENST00000637578 LRRC20Q8TCA0 184 aa13.88□□□□□ -0.19
CLN3-260ENST00000637578 PLA2G2EQ9NZK7 142 aa13.88□□□□□ -0.19
CLN3-260ENST00000637578 TRBV19A0A075B6N1 114 aa13.87□□□□□ -0.19
CLN3-260ENST00000637578 IGKV3-20P01619 116 aa13.87□□□□□ -0.19
CLN3-260ENST00000637578 PSG9Q00887 426 aa13.87□□□□□ -0.19
CLN3-260ENST00000637578 GUK1Q16774 197 aa13.87□□□□□ -0.19
CLN3-260ENST00000637578 RNF182Q8N6D2 247 aa13.87□□□□□ -0.19
CLN3-260ENST00000637578 OR4B1Q8NGF8 309 aa13.87□□□□□ -0.19
CLN3-260ENST00000637578 TMED6Q8WW62 240 aa13.87□□□□□ -0.19
CLN3-260ENST00000637578 RAB24Q969Q5 203 aa13.87□□□□□ -0.19
CLN3-260ENST00000637578 FXYD5Q96DB9 178 aa13.87□□□□□ -0.19
CLN3-260ENST00000637578 SAT2Q96F10 170 aaPredicted RBP13.87□□□□□ -0.19
CLN3-260ENST00000637578 ZNF331Q9NQX6 463 aaPredicted RBP13.87□□□□□ -0.19
CLN3-260ENST00000637578 HLA-DMBP28068 263 aa13.86□□□□□ -0.19
CLN3-260ENST00000637578 AMTNQ6UX39 209 aa13.86□□□□□ -0.19
CLN3-260ENST00000637578 SSX7Q7RTT5 188 aa13.86□□□□□ -0.19
CLN3-260ENST00000637578 SLC51BQ86UW2 128 aa13.86□□□□□ -0.19
CLN3-260ENST00000637578 BLNKQ8WV28 456 aa13.86□□□□□ -0.19
CLN3-260ENST00000637578 RNF141Q8WVD5 230 aa13.86□□□□□ -0.19
CLN3-260ENST00000637578 SLC50A1Q9BRV3 221 aa13.86□□□□□ -0.19
CLN3-260ENST00000637578 ACTR3CQ9C0K3 210 aaPredicted RBP13.86□□□□□ -0.19
CLN3-260ENST00000637578 SLC35B3Q9H1N7 401 aa13.86□□□□□ -0.19
CLN3-260ENST00000637578 UBE2L3P68036 154 aaKnown RBP13.85□□□□□ -0.19
CLN3-260ENST00000637578 ZNF726P1Q15940 193 aa13.85□□□□□ -0.19
CLN3-260ENST00000637578 SMIM9A6NGZ8 99 aa13.84□□□□□ -0.19
CLN3-260ENST00000637578 NDUFB4O95168 129 aa13.84□□□□□ -0.19
CLN3-260ENST00000637578 NBEAP1P0C6P0 100 aa13.84□□□□□ -0.19
CLN3-260ENST00000637578 FXYD7P58549 80 aa13.84□□□□□ -0.19
CLN3-260ENST00000637578 PQLC2Q6ZP29 291 aa13.84□□□□□ -0.19
CLN3-260ENST00000637578 BOLA1Q9Y3E2 137 aa13.84□□□□□ -0.19
CLN3-260ENST00000637578 C11orf94C9JXX5 98 aa13.83□□□□□ -0.19
CLN3-260ENST00000637578 ZNF253O75346 499 aa13.83□□□□□ -0.19
CLN3-260ENST00000637578 STAG3L2P0CL84 134 aa13.83□□□□□ -0.19
CLN3-260ENST00000637578 STAG3L3P0CL85 134 aa13.83□□□□□ -0.19
CLN3-260ENST00000637578 ARL14EPLP0DKL9 152 aa13.83□□□□□ -0.19
CLN3-260ENST00000637578 PDE6HQ13956 83 aa13.83□□□□□ -0.19
CLN3-260ENST00000637578 CTXND1A0A1B0GTU2 59 aa13.83□□□□□ -0.2
CLN3-260ENST00000637578 BOLA2-SMG1P6H3BVE0 249 aa13.83□□□□□ -0.2
CLN3-260ENST00000637578 FHITP49789 147 aa13.83□□□□□ -0.2
CLN3-260ENST00000637578 UMAD1C9J7I0 102 aa13.82□□□□□ -0.2
CLN3-260ENST00000637578 LY6G6CO95867 125 aa13.82□□□□□ -0.2
CLN3-260ENST00000637578 PRB4P10163 310 aaPredicted RBP13.82□□□□□ -0.2
CLN3-260ENST00000637578 PSG3Q16557 428 aa13.82□□□□□ -0.2
CLN3-260ENST00000637578 C1orf158Q8N1D5 194 aa13.82□□□□□ -0.2
CLN3-260ENST00000637578 ZNF738Q8NE65 137 aa13.82□□□□□ -0.2
CLN3-260ENST00000637578 C2CD4CQ8TF44 421 aa13.82□□□□□ -0.2
CLN3-260ENST00000637578 PHYHIPLQ96FC7 376 aa13.82□□□□□ -0.2
CLN3-260ENST00000637578 CELA1Q9UNI1 258 aa13.82□□□□□ -0.2
CLN3-260ENST00000637578 DUSP14O95147 198 aaKnown RBP13.81□□□□□ -0.2
CLN3-260ENST00000637578 CNN1P51911 297 aaKnown RBP13.81□□□□□ -0.2
CLN3-260ENST00000637578 TCTAP57738 103 aa13.81□□□□□ -0.2
CLN3-260ENST00000637578 EIF5AL1Q6IS14 154 aaKnown RBP13.81□□□□□ -0.2
CLN3-260ENST00000637578 Q6ZTC4 211 aa13.81□□□□□ -0.2
CLN3-260ENST00000637578 GCHFRP30047 84 aa13.8□□□□□ -0.2
CLN3-260ENST00000637578 C12orf74Q32Q52 190 aa13.8□□□□□ -0.2
CLN3-260ENST00000637578 LGALS9CQ6DKI2 356 aa13.8□□□□□ -0.2
CLN3-260ENST00000637578 EXOC3-AS1Q8N2X6 119 aa13.8□□□□□ -0.2
CLN3-260ENST00000637578 FAM213BQ8TBF2 198 aa13.8□□□□□ -0.2
CLN3-260ENST00000637578 TMEM189A5PLL7 270 aa13.79□□□□□ -0.2
CLN3-260ENST00000637578 CXorf1O96002 111 aa13.79□□□□□ -0.2
CLN3-260ENST00000637578 RPUSD4Q96CM3 377 aaKnown RBP13.79□□□□□ -0.2
CLN3-260ENST00000637578 IGF2BP2-AS1Q96M15 143 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms