RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 PARD6GQ9BYG4 376 aaPredicted RBP9.7□□□□□ -0.86
CLN3-249ENST00000636685 CACNG5Q9UF02 275 aa9.7□□□□□ -0.86
CLN3-249ENST00000636685 CD3DP04234 171 aa9.69□□□□□ -0.86
CLN3-249ENST00000636685 SCXQ7RTU7 201 aa9.69□□□□□ -0.86
CLN3-249ENST00000636685 OR1B1Q8NGR6 318 aa9.69□□□□□ -0.86
CLN3-249ENST00000636685 K7EP13 123 aa9.68□□□□□ -0.86
CLN3-249ENST00000636685 ZNF324O75467 553 aaPredicted RBP9.68□□□□□ -0.86
CLN3-249ENST00000636685 FABP1P07148 127 aa9.68□□□□□ -0.86
CLN3-249ENST00000636685 CRYGDP07320 174 aa9.68□□□□□ -0.86
CLN3-249ENST00000636685 GIPP09681 153 aaPredicted RBP9.68□□□□□ -0.86
CLN3-249ENST00000636685 RAP2BP61225 183 aa9.68□□□□□ -0.86
CLN3-249ENST00000636685 DAZ2Q13117 558 aaKnown RBP9.68□□□□□ -0.86
CLN3-249ENST00000636685 OR51S1Q8NGJ8 323 aa9.68□□□□□ -0.86
CLN3-249ENST00000636685 SLC35E1Q96K37 410 aa9.68□□□□□ -0.86
CLN3-249ENST00000636685 PRRT1Q99946 306 aa9.68□□□□□ -0.86
CLN3-249ENST00000636685 MT1HL1P0DM35 61 aa9.67□□□□□ -0.86
CLN3-249ENST00000636685 CXCL3P19876 107 aa9.67□□□□□ -0.86
CLN3-249ENST00000636685 PSG3Q16557 428 aa9.67□□□□□ -0.86
CLN3-249ENST00000636685 GFI1BQ5VTD9 330 aa9.67□□□□□ -0.86
CLN3-249ENST00000636685 FAM219AQ8IW50 185 aa9.67□□□□□ -0.86
CLN3-249ENST00000636685 OR4D5Q8NGN0 318 aa9.67□□□□□ -0.86
CLN3-249ENST00000636685 LHFPL5Q8TAF8 219 aa9.67□□□□□ -0.86
CLN3-249ENST00000636685 C20orf144Q9BQM9 153 aa9.67□□□□□ -0.86
CLN3-249ENST00000636685 SEC22CQ9BRL7 303 aa9.67□□□□□ -0.86
CLN3-249ENST00000636685 MGAT4CQ9UBM8 478 aa9.67□□□□□ -0.86
CLN3-249ENST00000636685 BOLA1Q9Y3E2 137 aa9.67□□□□□ -0.86
CLN3-249ENST00000636685 IGHV3-53P01767 116 aa9.66□□□□□ -0.86
CLN3-249ENST00000636685 ANXA7P20073 488 aaKnown RBP9.66□□□□□ -0.86
CLN3-249ENST00000636685 RNASE10Q5GAN6 216 aaKnown RBP9.66□□□□□ -0.86
CLN3-249ENST00000636685 SCGB3A2Q96PL1 93 aa9.66□□□□□ -0.86
CLN3-249ENST00000636685 TRGV9Q99603 122 aa9.66□□□□□ -0.86
CLN3-249ENST00000636685 FUT9Q9Y231 359 aa9.66□□□□□ -0.86
CLN3-249ENST00000636685 HSPB11Q9Y547 144 aa9.66□□□□□ -0.86
CLN3-249ENST00000636685 IGKV1OR2-108A0A075B7D4 117 aa9.65□□□□□ -0.86
CLN3-249ENST00000636685 TRGV1A0A0A0MS02 117 aa9.65□□□□□ -0.86
CLN3-249ENST00000636685 GPX4P36969 197 aaPredicted RBP9.65□□□□□ -0.86
CLN3-249ENST00000636685 MRPL23Q16540 153 aaKnown RBP9.65□□□□□ -0.86
CLN3-249ENST00000636685 Q5BKY6 102 aa9.65□□□□□ -0.86
CLN3-249ENST00000636685 FAAP20Q6NZ36 180 aa9.65□□□□□ -0.86
CLN3-249ENST00000636685 NEGR1Q7Z3B1 354 aa9.65□□□□□ -0.86
CLN3-249ENST00000636685 LGI3Q8N145 548 aa9.65□□□□□ -0.86
CLN3-249ENST00000636685 C9orf62Q8N4C0 152 aa9.65□□□□□ -0.86
CLN3-249ENST00000636685 C10orf126Q8N4M7 172 aa9.65□□□□□ -0.86
CLN3-249ENST00000636685 OR4D10Q8NGI6 311 aa9.65□□□□□ -0.86
CLN3-249ENST00000636685 GPR82Q96P67 336 aa9.65□□□□□ -0.86
CLN3-249ENST00000636685 GSN-AS1Q9NRJ2 163 aa9.65□□□□□ -0.86
CLN3-249ENST00000636685 U3KQ87 197 aa9.65□□□□□ -0.86
CLN3-249ENST00000636685 SMLR1H3BR10 107 aa9.64□□□□□ -0.87
CLN3-249ENST00000636685 J3KRW8 73 aa9.64□□□□□ -0.87
CLN3-249ENST00000636685 CDS2O95674 445 aa9.64□□□□□ -0.87
CLN3-249ENST00000636685 ORM2P19652 201 aa9.64□□□□□ -0.87
CLN3-249ENST00000636685 GATA2P23769 480 aaPredicted RBP9.64□□□□□ -0.87
CLN3-249ENST00000636685 HNRNPA3P51991 378 aaKnown RBP9.64□□□□□ -0.87
CLN3-249ENST00000636685 WFDC2Q14508 124 aa9.64□□□□□ -0.87
CLN3-249ENST00000636685 LINC01620Q4KN68 170 aa9.64□□□□□ -0.87
CLN3-249ENST00000636685 C4orf46Q504U0 113 aa9.64□□□□□ -0.87
CLN3-249ENST00000636685 LHFPL1Q86WI0 220 aa9.64□□□□□ -0.87
CLN3-249ENST00000636685 SELENOHQ8IZQ5 122 aaKnown RBP9.64□□□□□ -0.87
CLN3-249ENST00000636685 C12orf45Q8N5I9 185 aaPredicted RBP9.64□□□□□ -0.87
CLN3-249ENST00000636685 OR2T35Q8NGX2 323 aa9.64□□□□□ -0.87
CLN3-249ENST00000636685 RPUSD4Q96CM3 377 aaKnown RBP9.64□□□□□ -0.87
CLN3-249ENST00000636685 SLC45A2Q9UMX9 530 aa9.64□□□□□ -0.87
CLN3-249ENST00000636685 RCL1Q9Y2P8 373 aaKnown RBP9.64□□□□□ -0.87
CLN3-249ENST00000636685 RS1O15537 224 aa9.63□□□□□ -0.87
CLN3-249ENST00000636685 OR4E1P0C645 316 aa9.63□□□□□ -0.87
CLN3-249ENST00000636685 CRYBA4P53673 196 aa9.63□□□□□ -0.87
CLN3-249ENST00000636685 TMEM182Q6ZP80 229 aaPredicted RBP9.63□□□□□ -0.87
CLN3-249ENST00000636685 SLC7A5P1Q8MH63 180 aa9.63□□□□□ -0.87
CLN3-249ENST00000636685 LRTM2Q8N967 370 aa9.63□□□□□ -0.87
CLN3-249ENST00000636685 CCDC71LQ8N9Z2 235 aa9.63□□□□□ -0.87
CLN3-249ENST00000636685 THAP8Q8NA92 274 aa9.63□□□□□ -0.87
CLN3-249ENST00000636685 C8orf49Q96NF6 230 aa9.63□□□□□ -0.87
CLN3-249ENST00000636685 TMEM222Q9H0R3 208 aa9.63□□□□□ -0.87
CLN3-249ENST00000636685 Q9HAA7 133 aa9.63□□□□□ -0.87
CLN3-249ENST00000636685 PRO0255Q9UI72 69 aa9.63□□□□□ -0.87
CLN3-249ENST00000636685 TRAV12-3A0A0B4J271 114 aa9.62□□□□□ -0.87
CLN3-249ENST00000636685 HMSDA8MTL9 139 aa9.62□□□□□ -0.87
CLN3-249ENST00000636685 UBE2MP61081 183 aaKnown RBP9.62□□□□□ -0.87
CLN3-249ENST00000636685 LGALSLQ3ZCW2 172 aaPredicted RBP9.62□□□□□ -0.87
CLN3-249ENST00000636685 SCGB2B2Q4G0G5 96 aa9.62□□□□□ -0.87
CLN3-249ENST00000636685 GGNBP1Q5YKI7 109 aa9.62□□□□□ -0.87
CLN3-249ENST00000636685 C11orf72Q8NBR9 251 aa9.62□□□□□ -0.87
CLN3-249ENST00000636685 OR11H4Q8NGC9 324 aa9.62□□□□□ -0.87
CLN3-249ENST00000636685 TERB2Q8NHR7 220 aa9.62□□□□□ -0.87
CLN3-249ENST00000636685 DTD1Q8TEA8 209 aa9.62□□□□□ -0.87
CLN3-249ENST00000636685 GLYATL2Q8WU03 294 aa9.62□□□□□ -0.87
CLN3-249ENST00000636685 RBPMSQ93062 196 aaKnown RBP9.62□□□□□ -0.87
CLN3-249ENST00000636685 TMEM147Q9BVK8 224 aa9.62□□□□□ -0.87
CLN3-249ENST00000636685 TMEM56-RWDD3S4R434 201 aa9.62□□□□□ -0.87
CLN3-249ENST00000636685 CFDP00746 253 aaPredicted RBP9.61□□□□□ -0.87
CLN3-249ENST00000636685 IFNA7P01567 189 aa9.61□□□□□ -0.87
CLN3-249ENST00000636685 OR13C8Q8NGS7 320 aa9.61□□□□□ -0.87
CLN3-249ENST00000636685 LRRC20Q8TCA0 184 aa9.61□□□□□ -0.87
CLN3-249ENST00000636685 CHAC1Q9BUX1 264 aa9.61□□□□□ -0.87
CLN3-249ENST00000636685 RBKSQ9H477 322 aa9.61□□□□□ -0.87
CLN3-249ENST00000636685 HHLA3Q9XRX5 114 aa9.61□□□□□ -0.87
CLN3-249ENST00000636685 H3BRN7 92 aa9.6□□□□□ -0.87
CLN3-249ENST00000636685 B3GALNT1O75752 331 aa9.6□□□□□ -0.87
CLN3-249ENST00000636685 SRIP30626 198 aa9.6□□□□□ -0.87
CLN3-249ENST00000636685 ZNF415Q09FC8 603 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms