RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 FBN3Q75N90 2809 aa8.05□□□□□ -1.12
CLN3-248ENST00000636355 TRBV24-1A0A075B6N3 115 aa8.05□□□□□ -1.12
CLN3-248ENST00000636355 K7EN84 100 aa8.05□□□□□ -1.12
CLN3-248ENST00000636355 IGLV2-8P01709 118 aa8.05□□□□□ -1.12
CLN3-248ENST00000636355 FLI1Q01543 452 aaPredicted RBP8.05□□□□□ -1.12
CLN3-248ENST00000636355 CT83Q5H943 113 aa8.05□□□□□ -1.12
CLN3-248ENST00000636355 KCNIP4Q6PIL6 250 aa8.05□□□□□ -1.12
CLN3-248ENST00000636355 GOLT1AQ6ZVE7 132 aa8.05□□□□□ -1.12
CLN3-248ENST00000636355 BAGE2Q86Y30 109 aa8.05□□□□□ -1.12
CLN3-248ENST00000636355 TMEM183AQ8IXX5 376 aa8.05□□□□□ -1.12
CLN3-248ENST00000636355 KLHL30-AS1Q8NEE0 82 aa8.05□□□□□ -1.12
CLN3-248ENST00000636355 C17orf77Q96MU5 243 aa8.05□□□□□ -1.12
CLN3-248ENST00000636355 MLST8Q9BVC4 326 aa8.05□□□□□ -1.12
CLN3-248ENST00000636355 PPP1R14DQ9NXH3 145 aa8.05□□□□□ -1.12
CLN3-248ENST00000636355 ZNF492Q9P255 531 aa8.05□□□□□ -1.12
CLN3-248ENST00000636355 MLXQ9UH92 298 aa8.05□□□□□ -1.12
CLN3-248ENST00000636355 ZFHX3Q15911 3703 aa8.05□□□□□ -1.12
CLN3-248ENST00000636355 ANK3Q12955 4377 aaKnown RBP8.04□□□□□ -1.12
CLN3-248ENST00000636355 TRAV2A0A0B4J234 112 aa8.04□□□□□ -1.12
CLN3-248ENST00000636355 H3BTX0 84 aa8.04□□□□□ -1.12
CLN3-248ENST00000636355 SOCS3O14543 225 aa8.04□□□□□ -1.12
CLN3-248ENST00000636355 IGLV2-11P01706 119 aa8.04□□□□□ -1.12
CLN3-248ENST00000636355 APOHP02749 345 aaPredicted RBP8.04□□□□□ -1.12
CLN3-248ENST00000636355 FOLR2P14207 255 aa8.04□□□□□ -1.12
CLN3-248ENST00000636355 PROK1P58294 105 aa8.04□□□□□ -1.12
CLN3-248ENST00000636355 FOXL1Q12952 345 aa8.04□□□□□ -1.12
CLN3-248ENST00000636355 KHDC1LQ5JSQ8 128 aa8.04□□□□□ -1.12
CLN3-248ENST00000636355 OR10G8Q8NGN5 311 aa8.04□□□□□ -1.12
CLN3-248ENST00000636355 DPF1Q92782 380 aa8.04□□□□□ -1.12
CLN3-248ENST00000636355 LENEPQ9Y5L5 61 aa8.04□□□□□ -1.12
CLN3-248ENST00000636355 TRBV7-9A0A0J9YWB2 115 aa8.03□□□□□ -1.12
CLN3-248ENST00000636355 C2orf70A6NJV1 201 aa8.03□□□□□ -1.12
CLN3-248ENST00000636355 ZNF207O43670 478 aaKnown RBP8.03□□□□□ -1.12
CLN3-248ENST00000636355 SYNJ2BPP57105 145 aa8.03□□□□□ -1.12
CLN3-248ENST00000636355 RPL19P84098 196 aaKnown RBP8.03□□□□□ -1.12
CLN3-248ENST00000636355 ELOBQ15370 118 aa8.03□□□□□ -1.12
CLN3-248ENST00000636355 TM4SF20Q53R12 229 aa8.03□□□□□ -1.12
CLN3-248ENST00000636355 SAPCD1Q5SSQ6 148 aa8.03□□□□□ -1.12
CLN3-248ENST00000636355 IBA57Q5T440 356 aaKnown RBP8.03□□□□□ -1.12
CLN3-248ENST00000636355 OR4B1Q8NGF8 309 aa8.03□□□□□ -1.12
CLN3-248ENST00000636355 OR1N2Q8NGR9 330 aa8.03□□□□□ -1.12
CLN3-248ENST00000636355 NDFIP1Q9BT67 221 aa8.03□□□□□ -1.12
CLN3-248ENST00000636355 SIGLEC8Q9NYZ4 499 aa8.03□□□□□ -1.12
CLN3-248ENST00000636355 RPH3ALQ9UNE2 315 aa8.03□□□□□ -1.12
CLN3-248ENST00000636355 RNF114Q9Y508 228 aa8.03□□□□□ -1.12
CLN3-248ENST00000636355 NF1P21359 2839 aa8.03□□□□□ -1.12
CLN3-248ENST00000636355 PGPEP1LA6NFU8 196 aa8.02□□□□□ -1.13
CLN3-248ENST00000636355 COLCA2A8K830 154 aa8.02□□□□□ -1.13
CLN3-248ENST00000636355 M0R3E3 92 aa8.02□□□□□ -1.13
CLN3-248ENST00000636355 SNRPCP09234 159 aaKnown RBP8.02□□□□□ -1.13
CLN3-248ENST00000636355 CT45A10P0DMU9 189 aa8.02□□□□□ -1.13
CLN3-248ENST00000636355 ID1P41134 155 aa8.02□□□□□ -1.13
CLN3-248ENST00000636355 ERVFC1-1P60608 527 aa8.02□□□□□ -1.13
CLN3-248ENST00000636355 LCN12Q6JVE5 192 aa8.02□□□□□ -1.13
CLN3-248ENST00000636355 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.02□□□□□ -1.13
CLN3-248ENST00000636355 OR11H1Q8NG94 326 aa8.02□□□□□ -1.13
CLN3-248ENST00000636355 OR9G4Q8NGQ1 327 aa8.02□□□□□ -1.13
CLN3-248ENST00000636355 C16orf92Q96LL3 132 aa8.02□□□□□ -1.13
CLN3-248ENST00000636355 PYGO2Q9BRQ0 406 aa8.02□□□□□ -1.13
CLN3-248ENST00000636355 PSG8Q9UQ74 426 aa8.02□□□□□ -1.13
CLN3-248ENST00000636355 SETD2Q9BYW2 2564 aaPredicted RBP8.01□□□□□ -1.13
CLN3-248ENST00000636355 IGHV3OR16-13A0A075B7E8 117 aa8.01□□□□□ -1.13
CLN3-248ENST00000636355 IGHV3-49A0A0A0MS15 119 aa8.01□□□□□ -1.13
CLN3-248ENST00000636355 IGHV3-74A0A0B4J1X5 117 aa8.01□□□□□ -1.13
CLN3-248ENST00000636355 TRAV8-2A0A0B4J237 113 aa8.01□□□□□ -1.13
CLN3-248ENST00000636355 TRAV34A0A0B4J273 112 aa8.01□□□□□ -1.13
CLN3-248ENST00000636355 IGHV3-66A0A0C4DH42 116 aa8.01□□□□□ -1.13
CLN3-248ENST00000636355 FAM231BA6NCW3 169 aa8.01□□□□□ -1.13
CLN3-248ENST00000636355 NPIPB6E9PJ23 425 aa8.01□□□□□ -1.13
CLN3-248ENST00000636355 OVOL1O14753 267 aa8.01□□□□□ -1.13
CLN3-248ENST00000636355 TYMSP04818 313 aa8.01□□□□□ -1.13
CLN3-248ENST00000636355 PFN1P07737 140 aaKnown RBP8.01□□□□□ -1.13
CLN3-248ENST00000636355 MGST1P10620 155 aaKnown RBP8.01□□□□□ -1.13
CLN3-248ENST00000636355 RAB5AP20339 215 aa8.01□□□□□ -1.13
CLN3-248ENST00000636355 CBLN1P23435 193 aa8.01□□□□□ -1.13
CLN3-248ENST00000636355 C9orf47Q6ZRZ4 202 aa8.01□□□□□ -1.13
CLN3-248ENST00000636355 TCF24Q7RTU0 167 aa8.01□□□□□ -1.13
CLN3-248ENST00000636355 NDUFA11Q86Y39 141 aa8.01□□□□□ -1.13
CLN3-248ENST00000636355 GBGT1Q8N5D6 347 aa8.01□□□□□ -1.13
CLN3-248ENST00000636355 DCANP1Q8TF63 244 aa8.01□□□□□ -1.13
CLN3-248ENST00000636355 LINC00479Q96M42 142 aa8.01□□□□□ -1.13
CLN3-248ENST00000636355 IL36BQ9NZH7 164 aa8.01□□□□□ -1.13
CLN3-248ENST00000636355 V9GYV3 84 aa8.01□□□□□ -1.13
CLN3-248ENST00000636355 TRAV8-1A0A0A6YYK1 113 aa8□□□□□ -1.13
CLN3-248ENST00000636355 C19orf71A6NCJ1 209 aa8□□□□□ -1.13
CLN3-248ENST00000636355 CD28P10747 220 aa8□□□□□ -1.13
CLN3-248ENST00000636355 SNRPD3P62318 126 aaKnown RBP8□□□□□ -1.13
CLN3-248ENST00000636355 PAFAH1B2P68402 229 aa8□□□□□ -1.13
CLN3-248ENST00000636355 COX19Q49B96 90 aa8□□□□□ -1.13
CLN3-248ENST00000636355 TMEM78Q5T7P6 136 aa8□□□□□ -1.13
CLN3-248ENST00000636355 PRNTQ86SH4 94 aa8□□□□□ -1.13
CLN3-248ENST00000636355 FAM24BQ8N5W8 94 aa8□□□□□ -1.13
CLN3-248ENST00000636355 GFRA4Q9GZZ7 299 aa8□□□□□ -1.13
CLN3-248ENST00000636355 SAV1Q9H4B6 383 aaPredicted RBP8□□□□□ -1.13
CLN3-248ENST00000636355 IGKV2-40A0A087WW87 121 aaPredicted RBP7.99□□□□□ -1.13
CLN3-248ENST00000636355 TRAV25A0A0B4J276 109 aa7.99□□□□□ -1.13
CLN3-248ENST00000636355 CCL24O00175 119 aa7.99□□□□□ -1.13
CLN3-248ENST00000636355 IGKV2D-40P01614 121 aaPredicted RBP7.99□□□□□ -1.13
CLN3-248ENST00000636355 P01737 135 aa7.99□□□□□ -1.13
CLN3-248ENST00000636355 SLURP1P55000 103 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms