RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 ZNF492Q9P255 531 aa4.97□□□□□ -1.61
SCN1A-212ENST00000636194 SMIM27A0A1W2PRY6 76 aa4.97□□□□□ -1.61
SCN1A-212ENST00000636194 C1QL1O75973 258 aa4.97□□□□□ -1.61
SCN1A-212ENST00000636194 BAALC-AS2P0C853 105 aa4.97□□□□□ -1.61
SCN1A-212ENST00000636194 GZMMP51124 257 aa4.97□□□□□ -1.61
SCN1A-212ENST00000636194 TGIF1Q15583 401 aa4.97□□□□□ -1.61
SCN1A-212ENST00000636194 MORN5Q5VZ52 161 aa4.97□□□□□ -1.61
SCN1A-212ENST00000636194 E9PLN8 166 aa4.96□□□□□ -1.61
SCN1A-212ENST00000636194 CT62P0C5K7 136 aa4.96□□□□□ -1.61
SCN1A-212ENST00000636194 FXYD7P58549 80 aa4.96□□□□□ -1.61
SCN1A-212ENST00000636194 TMEM92Q6UXU6 159 aa4.96□□□□□ -1.61
SCN1A-212ENST00000636194 RNF5Q99942 180 aa4.96□□□□□ -1.61
SCN1A-212ENST00000636194 TLN1Q9Y490 2541 aaKnown RBP4.96□□□□□ -1.61
SCN1A-212ENST00000636194 LRP4O75096 1905 aa4.96□□□□□ -1.61
SCN1A-212ENST00000636194 F8W1H4 67 aa4.96□□□□□ -1.62
SCN1A-212ENST00000636194 ADAMTSL5Q6ZMM2 481 aa4.96□□□□□ -1.62
SCN1A-212ENST00000636194 YBX2Q9Y2T7 364 aaKnown RBP4.96□□□□□ -1.62
SCN1A-212ENST00000636194 FXYD1O00168 92 aa4.96□□□□□ -1.62
SCN1A-212ENST00000636194 IL9P15248 144 aa4.96□□□□□ -1.62
SCN1A-212ENST00000636194 C15orf53Q8NAA6 179 aa4.96□□□□□ -1.62
SCN1A-212ENST00000636194 CRYGNQ8WXF5 182 aa4.96□□□□□ -1.62
SCN1A-212ENST00000636194 WBP1Q96G27 269 aa4.96□□□□□ -1.62
SCN1A-212ENST00000636194 B9D2Q9BPU9 175 aa4.96□□□□□ -1.62
SCN1A-212ENST00000636194 NAA38Q9BRA0 125 aaKnown RBP4.96□□□□□ -1.62
SCN1A-212ENST00000636194 C5orf66Q9H5L9 145 aa4.96□□□□□ -1.62
SCN1A-212ENST00000636194 MTORP42345 2549 aa4.96□□□□□ -1.62
SCN1A-212ENST00000636194 SAA2-SAA4A0A096LPE2 208 aa4.96□□□□□ -1.62
SCN1A-212ENST00000636194 A0A1W2PPV9 198 aa4.96□□□□□ -1.62
SCN1A-212ENST00000636194 SAA2P0DJI9 122 aaPredicted RBP4.96□□□□□ -1.62
SCN1A-212ENST00000636194 EFNA4P52798 201 aa4.96□□□□□ -1.62
SCN1A-212ENST00000636194 IGHV2OR16-5A0A0B4J2B6 119 aa4.96□□□□□ -1.62
SCN1A-212ENST00000636194 FANCD2OSQ96PS1 177 aa4.96□□□□□ -1.62
SCN1A-212ENST00000636194 SIGLEC8Q9NYZ4 499 aa4.96□□□□□ -1.62
SCN1A-212ENST00000636194 ZNF106Q9H2Y7 1883 aaKnown RBP4.96□□□□□ -1.62
SCN1A-212ENST00000636194 IGHMP01871 453 aa4.96□□□□□ -1.62
SCN1A-212ENST00000636194 SERP2Q8N6R1 65 aa4.96□□□□□ -1.62
SCN1A-212ENST00000636194 IGLV3-25P01717 112 aa4.95□□□□□ -1.62
SCN1A-212ENST00000636194 ZNF883P0CG24 379 aa4.95□□□□□ -1.62
SCN1A-212ENST00000636194 HLA-DRB4P13762 266 aa4.95□□□□□ -1.62
SCN1A-212ENST00000636194 TRGV9Q99603 122 aa4.95□□□□□ -1.62
SCN1A-212ENST00000636194 MRPS18AQ9NVS2 196 aaKnown RBP4.95□□□□□ -1.62
SCN1A-212ENST00000636194 HLA-DRB4X5D2U9 266 aa4.95□□□□□ -1.62
SCN1A-212ENST00000636194 BRWD3Q6RI45 1802 aa4.95□□□□□ -1.62
SCN1A-212ENST00000636194 IGHV1-24A0A0C4DH33 117 aa4.95□□□□□ -1.62
SCN1A-212ENST00000636194 IGFBP3P17936 291 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-212ENST00000636194 GUSBP1Q15486 140 aa4.95□□□□□ -1.62
SCN1A-212ENST00000636194 DMRTC2Q8IXT2 367 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-212ENST00000636194 J3KT08 172 aa4.95□□□□□ -1.62
SCN1A-212ENST00000636194 IFI6P09912 130 aa4.95□□□□□ -1.62
SCN1A-212ENST00000636194 CSRP2Q16527 193 aa4.95□□□□□ -1.62
SCN1A-212ENST00000636194 SLC25A47Q6Q0C1 308 aa4.95□□□□□ -1.62
SCN1A-212ENST00000636194 SEM1Q6ZVN7 128 aa4.95□□□□□ -1.62
SCN1A-212ENST00000636194 FAM60AQ9NP50 221 aa4.95□□□□□ -1.62
SCN1A-212ENST00000636194 PSMB8P28062 276 aa4.95□□□□□ -1.62
SCN1A-212ENST00000636194 TIMP3P35625 211 aa4.95□□□□□ -1.62
SCN1A-212ENST00000636194 PGFP49763 221 aa4.95□□□□□ -1.62
SCN1A-212ENST00000636194 ZNF660Q6AZW8 331 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-212ENST00000636194 NCOR1P1Q9H4R4 102 aa4.95□□□□□ -1.62
SCN1A-212ENST00000636194 IGHV4-4A0A075B6R2 117 aa4.95□□□□□ -1.62
SCN1A-212ENST00000636194 TRBV5-7A0A0A0MS05 114 aa4.95□□□□□ -1.62
SCN1A-212ENST00000636194 NXPH4O95158 308 aa4.95□□□□□ -1.62
SCN1A-212ENST00000636194 CECR9P0C854 216 aa4.95□□□□□ -1.62
SCN1A-212ENST00000636194 HLA-DMBP28068 263 aa4.95□□□□□ -1.62
SCN1A-212ENST00000636194 PPIFP30405 207 aaKnown RBP4.95□□□□□ -1.62
SCN1A-212ENST00000636194 VMO1Q7Z5L0 202 aa4.95□□□□□ -1.62
SCN1A-212ENST00000636194 Q9HAA7 133 aa4.95□□□□□ -1.62
SCN1A-212ENST00000636194 IGKV1OR2-108A0A075B7D4 117 aa4.94□□□□□ -1.62
SCN1A-212ENST00000636194 IL15RAQ13261 267 aa4.94□□□□□ -1.62
SCN1A-212ENST00000636194 FOXE3Q13461 319 aa4.94□□□□□ -1.62
SCN1A-212ENST00000636194 KIR3DS1Q14943 382 aa4.94□□□□□ -1.62
SCN1A-212ENST00000636194 C5orf64Q2M2E5 130 aa4.94□□□□□ -1.62
SCN1A-212ENST00000636194 UBE2D4Q9Y2X8 147 aa4.94□□□□□ -1.62
SCN1A-212ENST00000636194 LINC01619G3V211 115 aa4.94□□□□□ -1.62
SCN1A-212ENST00000636194 SS18L2Q9UHA2 77 aa4.94□□□□□ -1.62
SCN1A-212ENST00000636194 ADAMTSL3P82987 1691 aa4.94□□□□□ -1.62
SCN1A-212ENST00000636194 ATOX1O00244 68 aa4.94□□□□□ -1.62
SCN1A-212ENST00000636194 PDE6GP18545 87 aa4.94□□□□□ -1.62
SCN1A-212ENST00000636194 VN1R4Q7Z5H5 301 aa4.94□□□□□ -1.62
SCN1A-212ENST00000636194 ZNF501Q96CX3 271 aaPredicted RBP4.94□□□□□ -1.62
SCN1A-212ENST00000636194 C14orf178Q8N769 122 aaPredicted RBP4.94□□□□□ -1.62
SCN1A-212ENST00000636194 NCOR2Q9Y618 2525 aa4.94□□□□□ -1.62
SCN1A-212ENST00000636194 TRAV3A0A0B4J244 114 aa4.94□□□□□ -1.62
SCN1A-212ENST00000636194 A6NED7 52 aa4.94□□□□□ -1.62
SCN1A-212ENST00000636194 H3BMG7 143 aa4.94□□□□□ -1.62
SCN1A-212ENST00000636194 ZFP36L1Q07352 338 aaKnown RBP4.94□□□□□ -1.62
SCN1A-212ENST00000636194 RHOHQ15669 191 aa4.94□□□□□ -1.62
SCN1A-212ENST00000636194 MIR17HGQ75NE6 70 aa4.94□□□□□ -1.62
SCN1A-212ENST00000636194 MIXL1Q9H2W2 232 aa4.94□□□□□ -1.62
SCN1A-212ENST00000636194 CFHR3Q02985 330 aa4.94□□□□□ -1.62
SCN1A-212ENST00000636194 XAF1Q6GPH4 301 aa4.94□□□□□ -1.62
SCN1A-212ENST00000636194 PAQR4Q8N4S7 273 aaPredicted RBP4.94□□□□□ -1.62
SCN1A-212ENST00000636194 FGFBP3Q8TAT2 258 aa4.94□□□□□ -1.62
SCN1A-212ENST00000636194 TMEM14DPA8MWL7 114 aa4.93□□□□□ -1.62
SCN1A-212ENST00000636194 LTAP01374 205 aa4.93□□□□□ -1.62
SCN1A-212ENST00000636194 CELA2BP08218 269 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-212ENST00000636194 TFF3Q07654 80 aa4.93□□□□□ -1.62
SCN1A-212ENST00000636194 ZNF362Q5T0B9 420 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-212ENST00000636194 RNF152Q8N8N0 203 aa4.93□□□□□ -1.62
SCN1A-212ENST00000636194 ZNRF2Q8NHG8 242 aa4.93□□□□□ -1.62
SCN1A-212ENST00000636194 LHFPL6Q9Y693 200 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms