RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 RPUSD4Q96CM3 377 aaKnown RBP13.27□□□□□ -0.29
CLN3-243ENST00000635973 CLEC5AQ9NY25 188 aa13.27□□□□□ -0.29
CLN3-243ENST00000635973 SPRY2O43597 315 aa13.26□□□□□ -0.29
CLN3-243ENST00000635973 PSG9Q00887 426 aa13.26□□□□□ -0.29
CLN3-243ENST00000635973 TMUB2Q71RG4 321 aa13.26□□□□□ -0.29
CLN3-243ENST00000635973 FXYD5Q96DB9 178 aa13.26□□□□□ -0.29
CLN3-243ENST00000635973 SAT2Q96F10 170 aaPredicted RBP13.26□□□□□ -0.29
CLN3-243ENST00000635973 AAMDCQ9H7C9 122 aa13.26□□□□□ -0.29
CLN3-243ENST00000635973 CXorf65A6NEN9 183 aa13.25□□□□□ -0.29
CLN3-243ENST00000635973 HMGB3O15347 200 aaKnown RBP13.25□□□□□ -0.29
CLN3-243ENST00000635973 DUSP14O95147 198 aaKnown RBP13.25□□□□□ -0.29
CLN3-243ENST00000635973 NBEAP1P0C6P0 100 aa13.25□□□□□ -0.29
CLN3-243ENST00000635973 C4BPBP20851 252 aa13.25□□□□□ -0.29
CLN3-243ENST00000635973 EIF5AP63241 154 aaKnown RBP13.25□□□□□ -0.29
CLN3-243ENST00000635973 HIST1H1AQ02539 215 aaPredicted RBP13.25□□□□□ -0.29
CLN3-243ENST00000635973 PQLC2Q6ZP29 291 aa13.25□□□□□ -0.29
CLN3-243ENST00000635973 HYLS1Q96M11 299 aa13.25□□□□□ -0.29
CLN3-243ENST00000635973 ACTR3CQ9C0K3 210 aaPredicted RBP13.25□□□□□ -0.29
CLN3-243ENST00000635973 TP53TG1Q9Y2A0 90 aa13.25□□□□□ -0.29
CLN3-243ENST00000635973 ZNF705DP0CH99 300 aaPredicted RBP13.24□□□□□ -0.29
CLN3-243ENST00000635973 ZNF705BP0CI00 300 aaPredicted RBP13.24□□□□□ -0.29
CLN3-243ENST00000635973 PRB4P10163 310 aaPredicted RBP13.24□□□□□ -0.29
CLN3-243ENST00000635973 CNN1P51911 297 aaKnown RBP13.24□□□□□ -0.29
CLN3-243ENST00000635973 C1QTNF4Q9BXJ3 329 aa13.24□□□□□ -0.29
CLN3-243ENST00000635973 PPP1R14DQ9NXH3 145 aa13.24□□□□□ -0.29
CLN3-243ENST00000635973 ZNF705FA8MVS1 300 aaPredicted RBP13.23□□□□□ -0.29
CLN3-243ENST00000635973 NDUFB4O95168 129 aa13.23□□□□□ -0.29
CLN3-243ENST00000635973 FXYD7P58549 80 aa13.23□□□□□ -0.29
CLN3-243ENST00000635973 PMS2P11Q13670 270 aa13.23□□□□□ -0.29
CLN3-243ENST00000635973 ZFP69Q49AA0 526 aa13.23□□□□□ -0.29
CLN3-243ENST00000635973 EXOC3-AS1Q8N2X6 119 aa13.23□□□□□ -0.29
CLN3-243ENST00000635973 RPP25LQ8N5L8 163 aaKnown RBP13.23□□□□□ -0.29
CLN3-243ENST00000635973 OR8A1Q8NGG7 326 aa13.23□□□□□ -0.29
CLN3-243ENST00000635973 RAB24Q969Q5 203 aa13.23□□□□□ -0.29
CLN3-243ENST00000635973 RNF183Q96D59 192 aa13.23□□□□□ -0.29
CLN3-243ENST00000635973 ZNF503Q96F45 646 aa13.23□□□□□ -0.29
CLN3-243ENST00000635973 PHYHIPLQ96FC7 376 aa13.23□□□□□ -0.29
CLN3-243ENST00000635973 PRELID1Q9Y255 219 aa13.23□□□□□ -0.29
CLN3-243ENST00000635973 A0A0J9YWU9 116 aa13.22□□□□□ -0.29
CLN3-243ENST00000635973 ARL14EPLP0DKL9 152 aa13.22□□□□□ -0.29
CLN3-243ENST00000635973 TPT1P13693 172 aaKnown RBP13.22□□□□□ -0.29
CLN3-243ENST00000635973 CD300CQ08708 224 aa13.22□□□□□ -0.29
CLN3-243ENST00000635973 ICAM4Q14773 271 aa13.22□□□□□ -0.29
CLN3-243ENST00000635973 IQCF2Q8IXL9 164 aa13.22□□□□□ -0.29
CLN3-243ENST00000635973 OR10J6PQ8NGY7 276 aa13.22□□□□□ -0.29
CLN3-243ENST00000635973 MRPL53Q96EL3 112 aaKnown RBP13.22□□□□□ -0.29
CLN3-243ENST00000635973 CLUHP3Q96NS8 147 aa13.22□□□□□ -0.29
CLN3-243ENST00000635973 XCL2Q9UBD3 114 aa13.22□□□□□ -0.29
CLN3-243ENST00000635973 STAG3L2P0CL84 134 aa13.21□□□□□ -0.29
CLN3-243ENST00000635973 STAG3L3P0CL85 134 aa13.21□□□□□ -0.29
CLN3-243ENST00000635973 RANP62826 216 aaKnown RBP13.21□□□□□ -0.29
CLN3-243ENST00000635973 LGALSLQ3ZCW2 172 aaPredicted RBP13.21□□□□□ -0.29
CLN3-243ENST00000635973 SLC35B3Q9H1N7 401 aa13.21□□□□□ -0.29
CLN3-243ENST00000635973 CTXND1A0A1B0GTU2 59 aa13.2□□□□□ -0.3
CLN3-243ENST00000635973 M0R3E3 92 aa13.2□□□□□ -0.3
CLN3-243ENST00000635973 GIG44P09565 113 aaPredicted RBP13.2□□□□□ -0.3
CLN3-243ENST00000635973 BAP18Q8IXM2 172 aa13.2□□□□□ -0.3
CLN3-243ENST00000635973 Q9H3A6 140 aa13.2□□□□□ -0.3
CLN3-243ENST00000635973 NUPR2A6NF83 97 aa13.19□□□□□ -0.3
CLN3-243ENST00000635973 PRAC2D3DTV9 90 aa13.19□□□□□ -0.3
CLN3-243ENST00000635973 CXorf1O96002 111 aa13.19□□□□□ -0.3
CLN3-243ENST00000635973 SEC11BP0C7V7 166 aa13.19□□□□□ -0.3
CLN3-243ENST00000635973 GCHFRP30047 84 aa13.19□□□□□ -0.3
CLN3-243ENST00000635973 CSN1S1P47710 185 aa13.19□□□□□ -0.3
CLN3-243ENST00000635973 OR11H2Q8NH07 326 aa13.19□□□□□ -0.3
CLN3-243ENST00000635973 RARRES2Q99969 163 aa13.19□□□□□ -0.3
CLN3-243ENST00000635973 HYDINQ4G0P3 5121 aa13.18□□□□□ -0.3
CLN3-243ENST00000635973 BOLA2-SMG1P6H3BVE0 249 aa13.18□□□□□ -0.3
CLN3-243ENST00000635973 SPINK13Q1W4C9 94 aa13.18□□□□□ -0.3
CLN3-243ENST00000635973 FAM74A1Q5RGS3 127 aa13.18□□□□□ -0.3
CLN3-243ENST00000635973 LYPD1Q8N2G4 141 aa13.18□□□□□ -0.3
CLN3-243ENST00000635973 STOML3Q8TAV4 291 aa13.18□□□□□ -0.3
CLN3-243ENST00000635973 A8MTW9 85 aa13.17□□□□□ -0.3
CLN3-243ENST00000635973 UMAD1C9J7I0 102 aa13.17□□□□□ -0.3
CLN3-243ENST00000635973 AMBPP02760 352 aa13.17□□□□□ -0.3
CLN3-243ENST00000635973 AMTNQ6UX39 209 aa13.17□□□□□ -0.3
CLN3-243ENST00000635973 SSX7Q7RTT5 188 aa13.17□□□□□ -0.3
CLN3-243ENST00000635973 CMTM2Q8TAZ6 248 aa13.17□□□□□ -0.3
CLN3-243ENST00000635973 TMED6Q8WW62 240 aa13.17□□□□□ -0.3
CLN3-243ENST00000635973 TMEM167BQ9NRX6 74 aa13.17□□□□□ -0.3
CLN3-243ENST00000635973 KLK5Q9Y337 293 aaPredicted RBP13.17□□□□□ -0.3
CLN3-243ENST00000635973 M0R2Z0 102 aa13.16□□□□□ -0.3
CLN3-243ENST00000635973 LY6G6CO95867 125 aa13.16□□□□□ -0.3
CLN3-243ENST00000635973 ZNF726P1Q15940 193 aa13.16□□□□□ -0.3
CLN3-243ENST00000635973 EIF5AL1Q6IS14 154 aaKnown RBP13.16□□□□□ -0.3
CLN3-243ENST00000635973 C9orf62Q8N4C0 152 aa13.16□□□□□ -0.3
CLN3-243ENST00000635973 FAM213BQ8TBF2 198 aa13.16□□□□□ -0.3
CLN3-243ENST00000635973 OTORQ9NRC9 128 aa13.16□□□□□ -0.3
CLN3-243ENST00000635973 IGHV3OR16-12A0A075B7B8 117 aa13.15□□□□□ -0.3
CLN3-243ENST00000635973 IGKV2-40A0A087WW87 121 aaPredicted RBP13.15□□□□□ -0.3
CLN3-243ENST00000635973 MAP1LC3B2A6NCE7 125 aa13.15□□□□□ -0.3
CLN3-243ENST00000635973 NPIPB6E9PJ23 425 aa13.15□□□□□ -0.3
CLN3-243ENST00000635973 INSP01308 110 aa13.15□□□□□ -0.3
CLN3-243ENST00000635973 IGKV2D-40P01614 121 aaPredicted RBP13.15□□□□□ -0.3
CLN3-243ENST00000635973 SLC51BQ86UW2 128 aa13.15□□□□□ -0.3
CLN3-243ENST00000635973 CSNK1G2-AS1Q8NCQ2 148 aa13.15□□□□□ -0.3
CLN3-243ENST00000635973 MAP1LC3BQ9GZQ8 125 aa13.15□□□□□ -0.3
CLN3-243ENST00000635973 RPH3ALQ9UNE2 315 aa13.15□□□□□ -0.3
CLN3-243ENST00000635973 GOLT1BQ9Y3E0 138 aa13.15□□□□□ -0.3
CLN3-243ENST00000635973 PGPA6NDG6 321 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 80.3 ms