RNA–Protein interactions for RNA: ENST00000631420.1

LIMS3-206, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 1,580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-206ENST00000631420 DEFB131AP59861 70 aa11.01□□□□□ -0.65
LIMS3-206ENST00000631420 ARL2-SNX15V9GYD0 113 aa11.01□□□□□ -0.65
LIMS3-206ENST00000631420 LINC00862A6NCI5 91 aa11□□□□□ -0.65
LIMS3-206ENST00000631420 C9JQL5 133 aa11□□□□□ -0.65
LIMS3-206ENST00000631420 F6UB75 175 aa11□□□□□ -0.65
LIMS3-206ENST00000631420 KRTAP10-11P60412 298 aa11□□□□□ -0.65
LIMS3-206ENST00000631420 SNRPD3P62318 126 aaKnown RBP11□□□□□ -0.65
LIMS3-206ENST00000631420 MEF2BQ02080 365 aaPredicted RBP11□□□□□ -0.65
LIMS3-206ENST00000631420 ZNF124Q15973 351 aa11□□□□□ -0.65
LIMS3-206ENST00000631420 MAP6D1Q9H9H5 199 aa11□□□□□ -0.65
LIMS3-206ENST00000631420 EPDR1Q9UM22 224 aa11□□□□□ -0.65
LIMS3-206ENST00000631420 RPH3ALQ9UNE2 315 aa11□□□□□ -0.65
LIMS3-206ENST00000631420 ZNF705DP0CH99 300 aaPredicted RBP10.99□□□□□ -0.65
LIMS3-206ENST00000631420 ZNF705BP0CI00 300 aaPredicted RBP10.99□□□□□ -0.65
LIMS3-206ENST00000631420 ODF3L2Q3SX64 289 aa10.99□□□□□ -0.65
LIMS3-206ENST00000631420 SAMD13Q5VXD3 122 aa10.99□□□□□ -0.65
LIMS3-206ENST00000631420 APRG1Q8IVJ8 170 aa10.99□□□□□ -0.65
LIMS3-206ENST00000631420 ZNF738Q8NE65 137 aa10.99□□□□□ -0.65
LIMS3-206ENST00000631420 CMTM2Q8TAZ6 248 aa10.99□□□□□ -0.65
LIMS3-206ENST00000631420 RPUSD4Q96CM3 377 aaKnown RBP10.99□□□□□ -0.65
LIMS3-206ENST00000631420 GPR61Q9BZJ8 451 aa10.99□□□□□ -0.65
LIMS3-206ENST00000631420 NKX6-2Q9C056 277 aaPredicted RBP10.99□□□□□ -0.65
LIMS3-206ENST00000631420 MED9Q9NWA0 146 aa10.99□□□□□ -0.65
LIMS3-206ENST00000631420 SORL1Q92673 2214 aa10.99□□□□□ -0.65
LIMS3-206ENST00000631420 SCO2A0A1W2PP80 73 aa10.99□□□□□ -0.65
LIMS3-206ENST00000631420 DIRC3C9JPN6 131 aa10.99□□□□□ -0.65
LIMS3-206ENST00000631420 SAMD5Q5TGI4 173 aa10.99□□□□□ -0.65
LIMS3-206ENST00000631420 GDF5OSQ5U4N7 250 aa10.99□□□□□ -0.65
LIMS3-206ENST00000631420 COMMD7Q86VX2 200 aa10.99□□□□□ -0.65
LIMS3-206ENST00000631420 C5orf17Q8NAS9 161 aa10.99□□□□□ -0.65
LIMS3-206ENST00000631420 C19orf73Q9NVV2 129 aa10.99□□□□□ -0.65
LIMS3-206ENST00000631420 CLEC5AQ9NY25 188 aa10.99□□□□□ -0.65
LIMS3-206ENST00000631420 PRELID1Q9Y255 219 aa10.99□□□□□ -0.65
LIMS3-206ENST00000631420 TCRAP04437 139 aa10.98□□□□□ -0.65
LIMS3-206ENST00000631420 TAGLN2P37802 199 aaKnown RBP10.98□□□□□ -0.65
LIMS3-206ENST00000631420 MRPL53Q96EL3 112 aaKnown RBP10.98□□□□□ -0.65
LIMS3-206ENST00000631420 SGK494Q96LW2 274 aa10.98□□□□□ -0.65
LIMS3-206ENST00000631420 LINC00479Q96M42 142 aa10.98□□□□□ -0.65
LIMS3-206ENST00000631420 WFDC10AQ9H1F0 79 aa10.98□□□□□ -0.65
LIMS3-206ENST00000631420 IGKV2-40A0A087WW87 121 aaPredicted RBP10.97□□□□□ -0.65
LIMS3-206ENST00000631420 RAB19A4D1S5 217 aa10.97□□□□□ -0.65
LIMS3-206ENST00000631420 KNCNA6PVL3 124 aa10.97□□□□□ -0.65
LIMS3-206ENST00000631420 IGKV2D-40P01614 121 aaPredicted RBP10.97□□□□□ -0.65
LIMS3-206ENST00000631420 SRP19P09132 144 aaKnown RBP10.97□□□□□ -0.65
LIMS3-206ENST00000631420 CSN1S1P47710 185 aa10.97□□□□□ -0.65
LIMS3-206ENST00000631420 EGFEM1PQ0D2K5 195 aa10.97□□□□□ -0.65
LIMS3-206ENST00000631420 PEA15Q15121 130 aa10.97□□□□□ -0.65
LIMS3-206ENST00000631420 GOLT1AQ6ZVE7 132 aa10.97□□□□□ -0.65
LIMS3-206ENST00000631420 PRR25Q96S07 402 aa10.97□□□□□ -0.65
LIMS3-206ENST00000631420 TXNDC17Q9BRA2 123 aa10.97□□□□□ -0.65
LIMS3-206ENST00000631420 TRAV34A0A0B4J273 112 aa10.96□□□□□ -0.65
LIMS3-206ENST00000631420 OR11H12B2RN74 326 aa10.96□□□□□ -0.65
LIMS3-206ENST00000631420 PEX7O00628 323 aa10.96□□□□□ -0.65
LIMS3-206ENST00000631420 ERCC8Q13216 396 aa10.96□□□□□ -0.65
LIMS3-206ENST00000631420 SLC7A5P1Q8MH63 180 aa10.96□□□□□ -0.65
LIMS3-206ENST00000631420 VGLL1Q99990 258 aa10.96□□□□□ -0.65
LIMS3-206ENST00000631420 TREM1Q9NP99 234 aa10.96□□□□□ -0.65
LIMS3-206ENST00000631420 TRAV8-1A0A0A6YYK1 113 aa10.95□□□□□ -0.66
LIMS3-206ENST00000631420 Q8N1Y9 231 aa10.95□□□□□ -0.66
LIMS3-206ENST00000631420 OR8A1Q8NGG7 326 aa10.95□□□□□ -0.66
LIMS3-206ENST00000631420 HIST1H2BAQ96A08 127 aa10.95□□□□□ -0.66
LIMS3-206ENST00000631420 CITED4Q96RK1 184 aa10.95□□□□□ -0.66
LIMS3-206ENST00000631420 ASCL2Q99929 193 aa10.95□□□□□ -0.66
LIMS3-206ENST00000631420 ATG101Q9BSB4 218 aa10.95□□□□□ -0.66
LIMS3-206ENST00000631420 PDE6DO43924 150 aa10.94□□□□□ -0.66
LIMS3-206ENST00000631420 CEBPGP53567 150 aa10.94□□□□□ -0.66
LIMS3-206ENST00000631420 ACTL10Q5JWF8 245 aa10.94□□□□□ -0.66
LIMS3-206ENST00000631420 DEFB125Q8N687 156 aa10.94□□□□□ -0.66
LIMS3-206ENST00000631420 ARL6IP6Q8N6S5 226 aa10.94□□□□□ -0.66
LIMS3-206ENST00000631420 C2CD4CQ8TF44 421 aa10.94□□□□□ -0.66
LIMS3-206ENST00000631420 C11orf52Q96A22 123 aa10.94□□□□□ -0.66
LIMS3-206ENST00000631420 DERL1Q9BUN8 251 aa10.94□□□□□ -0.66
LIMS3-206ENST00000631420 AGPAT4-IT1Q9H0P7 198 aa10.94□□□□□ -0.66
LIMS3-206ENST00000631420 SAV1Q9H4B6 383 aaPredicted RBP10.94□□□□□ -0.66
LIMS3-206ENST00000631420 A0A0J9YX75 114 aa10.94□□□□□ -0.66
LIMS3-206ENST00000631420 F6UZH7 168 aa10.94□□□□□ -0.66
LIMS3-206ENST00000631420 CMC4P56277 68 aaPredicted RBP10.94□□□□□ -0.66
LIMS3-206ENST00000631420 HIST1H1AQ02539 215 aaPredicted RBP10.94□□□□□ -0.66
LIMS3-206ENST00000631420 FOXI2Q6ZQN5 318 aa10.94□□□□□ -0.66
LIMS3-206ENST00000631420 GTSCR1Q86UQ5 136 aa10.94□□□□□ -0.66
LIMS3-206ENST00000631420 CYB561D1Q8N8Q1 229 aa10.94□□□□□ -0.66
LIMS3-206ENST00000631420 IGKV3-20P01619 116 aa10.93□□□□□ -0.66
LIMS3-206ENST00000631420 IGLV2-11P01706 119 aa10.93□□□□□ -0.66
LIMS3-206ENST00000631420 AKR1C3P42330 323 aa10.93□□□□□ -0.66
LIMS3-206ENST00000631420 CNN1P51911 297 aaKnown RBP10.93□□□□□ -0.66
LIMS3-206ENST00000631420 EBLN2Q6P2I7 272 aa10.93□□□□□ -0.66
LIMS3-206ENST00000631420 EIF4E3Q8N5X7 224 aaKnown RBP10.93□□□□□ -0.66
LIMS3-206ENST00000631420 FAM110AQ9BQ89 295 aa10.93□□□□□ -0.66
LIMS3-206ENST00000631420 TCEAL7Q9BRU2 100 aa10.93□□□□□ -0.66
LIMS3-206ENST00000631420 TMEM250H0YL14 139 aa10.92□□□□□ -0.66
LIMS3-206ENST00000631420 H3BMM0 161 aa10.92□□□□□ -0.66
LIMS3-206ENST00000631420 OR4B1Q8NGF8 309 aa10.92□□□□□ -0.66
LIMS3-206ENST00000631420 OR10J6PQ8NGY7 276 aa10.92□□□□□ -0.66
LIMS3-206ENST00000631420 Q8TAT8 98 aa10.92□□□□□ -0.66
LIMS3-206ENST00000631420 SLC35B3Q9H1N7 401 aa10.92□□□□□ -0.66
LIMS3-206ENST00000631420 SMDT1Q9H4I9 107 aa10.92□□□□□ -0.66
LIMS3-206ENST00000631420 RBAKDNA6NC62 111 aa10.91□□□□□ -0.66
LIMS3-206ENST00000631420 NPIPB6E9PJ23 425 aa10.91□□□□□ -0.66
LIMS3-206ENST00000631420 CT45A10P0DMU9 189 aa10.91□□□□□ -0.66
LIMS3-206ENST00000631420 HLA-DRB4P13762 266 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 102.6 ms