RNA–Protein interactions for RNA: ENST00000621870.4

GGA3-223, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 1 (best)

Gene GGA3, Length 4,034 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-223ENST00000621870 ATRQ13535 2644 aa7.38□□□□□ -1.23
GGA3-223ENST00000621870 USP24Q9UPU5 2620 aa7.38□□□□□ -1.23
GGA3-223ENST00000621870 COLCA2A8K830 154 aa7.38□□□□□ -1.23
GGA3-223ENST00000621870 EVI2AP22794 236 aa7.38□□□□□ -1.23
GGA3-223ENST00000621870 CFPP27918 469 aa7.38□□□□□ -1.23
GGA3-223ENST00000621870 FBXL19-AS1Q494R0 122 aa7.38□□□□□ -1.23
GGA3-223ENST00000621870 UBE2DNLQ8IWF7 75 aa7.38□□□□□ -1.23
GGA3-223ENST00000621870 MRAP2Q96G30 205 aa7.38□□□□□ -1.23
GGA3-223ENST00000621870 ST20Q9HBF5 79 aa7.38□□□□□ -1.23
GGA3-223ENST00000621870 CYTL1Q9NRR1 136 aa7.38□□□□□ -1.23
GGA3-223ENST00000621870 PLXNB3Q9ULL4 1909 aa7.38□□□□□ -1.23
GGA3-223ENST00000621870 IZUMO1RA6ND01 250 aa7.38□□□□□ -1.23
GGA3-223ENST00000621870 C19orf84I3L1E1 186 aa7.38□□□□□ -1.23
GGA3-223ENST00000621870 ZNF25P17030 456 aaPredicted RBP7.38□□□□□ -1.23
GGA3-223ENST00000621870 CDX1P47902 265 aaPredicted RBP7.38□□□□□ -1.23
GGA3-223ENST00000621870 PKIAP61925 76 aa7.38□□□□□ -1.23
GGA3-223ENST00000621870 SPINK13Q1W4C9 94 aa7.38□□□□□ -1.23
GGA3-223ENST00000621870 OR9G4Q8NGQ1 327 aa7.38□□□□□ -1.23
GGA3-223ENST00000621870 LINC00477Q96M19 166 aa7.38□□□□□ -1.23
GGA3-223ENST00000621870 PSG3Q16557 428 aa7.37□□□□□ -1.23
GGA3-223ENST00000621870 DEFB136Q30KP8 78 aa7.37□□□□□ -1.23
GGA3-223ENST00000621870 RNF182Q8N6D2 247 aa7.37□□□□□ -1.23
GGA3-223ENST00000621870 NUDT10Q8NFP7 164 aa7.37□□□□□ -1.23
GGA3-223ENST00000621870 NUDT11Q96G61 164 aa7.37□□□□□ -1.23
GGA3-223ENST00000621870 C1QL4Q86Z23 238 aa7.37□□□□□ -1.23
GGA3-223ENST00000621870 RAB37Q96AX2 223 aa7.37□□□□□ -1.23
GGA3-223ENST00000621870 FOXC2Q99958 501 aa7.37□□□□□ -1.23
GGA3-223ENST00000621870 SHANK2-AS3Q9BTD1 123 aa7.37□□□□□ -1.23
GGA3-223ENST00000621870 SOX21Q9Y651 276 aaPredicted RBP7.37□□□□□ -1.23
GGA3-223ENST00000621870 LOC107984156A0A0G2JMH3 177 aa7.37□□□□□ -1.23
GGA3-223ENST00000621870 CENPVL3A0A0U1RRI6 287 aa7.37□□□□□ -1.23
GGA3-223ENST00000621870 UBE2CO00762 179 aa7.37□□□□□ -1.23
GGA3-223ENST00000621870 ELANEP08246 267 aa7.37□□□□□ -1.23
GGA3-223ENST00000621870 PMCHL1Q16048 86 aa7.37□□□□□ -1.23
GGA3-223ENST00000621870 MST1LQ2TV78 715 aa7.37□□□□□ -1.23
GGA3-223ENST00000621870 ARL17AQ8IVW1 177 aa7.37□□□□□ -1.23
GGA3-223ENST00000621870 HIST1H4GQ99525 98 aa7.37□□□□□ -1.23
GGA3-223ENST00000621870 VCX2Q9H322 139 aa7.37□□□□□ -1.23
GGA3-223ENST00000621870 INSP01308 110 aa7.36□□□□□ -1.23
GGA3-223ENST00000621870 RNASE1P07998 156 aaKnown RBP7.36□□□□□ -1.23
GGA3-223ENST00000621870 HOXB4P17483 251 aaPredicted RBP7.36□□□□□ -1.23
GGA3-223ENST00000621870 CTAG1AP78358 180 aa7.36□□□□□ -1.23
GGA3-223ENST00000621870 RPL24P83731 157 aaKnown RBP7.36□□□□□ -1.23
GGA3-223ENST00000621870 ERCC8Q13216 396 aa7.36□□□□□ -1.23
GGA3-223ENST00000621870 C2orf88Q9BSF0 95 aa7.36□□□□□ -1.23
GGA3-223ENST00000621870 A0A1B0GW15 77 aa7.36□□□□□ -1.23
GGA3-223ENST00000621870 ATP5LO75964 103 aa7.36□□□□□ -1.23
GGA3-223ENST00000621870 LHBP01229 141 aa7.36□□□□□ -1.23
GGA3-223ENST00000621870 ZNF876PQ49A33 203 aa7.36□□□□□ -1.23
GGA3-223ENST00000621870 C22orf34Q6ZV56 151 aa7.36□□□□□ -1.23
GGA3-223ENST00000621870 DTX2Q86UW9 622 aa7.36□□□□□ -1.23
GGA3-223ENST00000621870 F8P00451 2351 aa7.36□□□□□ -1.23
GGA3-223ENST00000621870 KNCNA6PVL3 124 aa7.36□□□□□ -1.23
GGA3-223ENST00000621870 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.36□□□□□ -1.23
GGA3-223ENST00000621870 NCR2O95944 276 aa7.36□□□□□ -1.23
GGA3-223ENST00000621870 DDTP30046 118 aa7.36□□□□□ -1.23
GGA3-223ENST00000621870 YPEL3P61236 119 aaPredicted RBP7.36□□□□□ -1.23
GGA3-223ENST00000621870 PMCHL2Q9BQD1 86 aa7.36□□□□□ -1.23
GGA3-223ENST00000621870 TRANK1O15050 2925 aa7.36□□□□□ -1.23
GGA3-223ENST00000621870 A6NDN8 102 aa7.36□□□□□ -1.23
GGA3-223ENST00000621870 WIPF3A6NGB9 483 aa7.36□□□□□ -1.23
GGA3-223ENST00000621870 F2Z2F3 143 aa7.36□□□□□ -1.23
GGA3-223ENST00000621870 IFI27P40305 119 aaPredicted RBP7.36□□□□□ -1.23
GGA3-223ENST00000621870 Q8NFD4 153 aa7.36□□□□□ -1.23
GGA3-223ENST00000621870 DENND4AQ7Z401 1863 aa7.35□□□□□ -1.23
GGA3-223ENST00000621870 WDFY4Q6ZS81 3184 aa7.35□□□□□ -1.23
GGA3-223ENST00000621870 RPL36AP83881 106 aaKnown RBP7.35□□□□□ -1.23
GGA3-223ENST00000621870 C14orf178Q8N769 122 aaPredicted RBP7.35□□□□□ -1.23
GGA3-223ENST00000621870 TSKUQ8WUA8 353 aa7.35□□□□□ -1.23
GGA3-223ENST00000621870 RPL36ALQ969Q0 106 aaKnown RBP7.35□□□□□ -1.23
GGA3-223ENST00000621870 CRPP02741 224 aa7.35□□□□□ -1.23
GGA3-223ENST00000621870 SPATA45Q537H7 98 aa7.35□□□□□ -1.23
GGA3-223ENST00000621870 PRADC1Q9BSG0 188 aa7.35□□□□□ -1.23
GGA3-223ENST00000621870 LOC102724200A0A096LPH7 203 aaPredicted RBP7.35□□□□□ -1.23
GGA3-223ENST00000621870 ZFP36P26651 326 aaKnown RBP7.35□□□□□ -1.23
GGA3-223ENST00000621870 LYZL1Q6UWQ5 148 aa7.35□□□□□ -1.23
GGA3-223ENST00000621870 LINC01551Q86U37 167 aa7.35□□□□□ -1.23
GGA3-223ENST00000621870 CYYR1Q96J86 154 aa7.35□□□□□ -1.23
GGA3-223ENST00000621870 SNAI2O43623 268 aa7.34□□□□□ -1.23
GGA3-223ENST00000621870 RPLP1P05386 114 aaKnown RBP7.34□□□□□ -1.23
GGA3-223ENST00000621870 COX6CP09669 75 aa7.34□□□□□ -1.23
GGA3-223ENST00000621870 MALP21145 153 aa7.34□□□□□ -1.23
GGA3-223ENST00000621870 SLC25A34Q6PIV7 304 aa7.34□□□□□ -1.23
GGA3-223ENST00000621870 ZNF843Q8N446 348 aa7.34□□□□□ -1.23
GGA3-223ENST00000621870 MRAPQ8TCY5 172 aa7.34□□□□□ -1.23
GGA3-223ENST00000621870 TRAV1-1A0A0B4J248 108 aa7.34□□□□□ -1.23
GGA3-223ENST00000621870 A0A0U1RRA0 63 aa7.34□□□□□ -1.23
GGA3-223ENST00000621870 TMEM238LA0A1B0GVL6 79 aa7.34□□□□□ -1.23
GGA3-223ENST00000621870 A6NJY4 79 aa7.34□□□□□ -1.23
GGA3-223ENST00000621870 PAX9P55771 341 aa7.34□□□□□ -1.23
GGA3-223ENST00000621870 C8orf86Q6ZUL3 223 aa7.34□□□□□ -1.23
GGA3-223ENST00000621870 LYPD1Q8N2G4 141 aa7.34□□□□□ -1.23
GGA3-223ENST00000621870 OR11H6Q8NGC7 330 aa7.34□□□□□ -1.23
GGA3-223ENST00000621870 CYSLTR1Q9Y271 337 aa7.34□□□□□ -1.23
GGA3-223ENST00000621870 A0A087WWL8 130 aa7.34□□□□□ -1.24
GGA3-223ENST00000621870 PPBPP02775 128 aa7.34□□□□□ -1.24
GGA3-223ENST00000621870 CFHR3Q02985 330 aa7.34□□□□□ -1.24
GGA3-223ENST00000621870 ALPK3Q96L96 1907 aa7.33□□□□□ -1.24
GGA3-223ENST00000621870 CENPEQ02224 2701 aa7.33□□□□□ -1.24
GGA3-223ENST00000621870 NDUFA4O00483 81 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 85.2 ms