RNA–Protein interactions for RNA: ENST00000617451.4

PTPRF-216, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5 BASIC

Gene PTPRF, Length 1,129 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-216ENST00000617451 GAGE12GP0CL81 117 aa17.26■□□□□ 0.35
PTPRF-216ENST00000617451 GAGE12IP0CL82 117 aa17.26■□□□□ 0.35
PTPRF-216ENST00000617451 IGLC2P0DOY2 106 aa17.26■□□□□ 0.35
PTPRF-216ENST00000617451 OPCMLQ14982 345 aa17.26■□□□□ 0.35
PTPRF-216ENST00000617451 ESRGQ1W209 222 aa17.26■□□□□ 0.35
PTPRF-216ENST00000617451 SAT2Q96F10 170 aaPredicted RBP17.26■□□□□ 0.35
PTPRF-216ENST00000617451 MGST2Q99735 147 aa17.26■□□□□ 0.35
PTPRF-216ENST00000617451 GSKIPQ9P0R6 139 aa17.26■□□□□ 0.35
PTPRF-216ENST00000617451 PXMP4Q9Y6I8 212 aa17.26■□□□□ 0.35
PTPRF-216ENST00000617451 C7orf66A4D0T2 115 aa17.25■□□□□ 0.35
PTPRF-216ENST00000617451 H3BNG1 76 aa17.25■□□□□ 0.35
PTPRF-216ENST00000617451 H3BQ15 152 aa17.25■□□□□ 0.35
PTPRF-216ENST00000617451 INPP1P49441 399 aa17.25■□□□□ 0.35
PTPRF-216ENST00000617451 Q8N1X5 172 aa17.25■□□□□ 0.35
PTPRF-216ENST00000617451 SNURFLB1AK76 121 aa17.24■□□□□ 0.35
PTPRF-216ENST00000617451 MBPP02686 304 aaPredicted RBP17.24■□□□□ 0.35
PTPRF-216ENST00000617451 CT45A10P0DMU9 189 aa17.24■□□□□ 0.35
PTPRF-216ENST00000617451 C10orf113Q5VZT2 155 aa17.24■□□□□ 0.35
PTPRF-216ENST00000617451 TRIQKQ629K1 86 aa17.24■□□□□ 0.35
PTPRF-216ENST00000617451 ODF3Q96PU9 254 aa17.24■□□□□ 0.35
PTPRF-216ENST00000617451 A0A1W2PPQ1 181 aa17.23■□□□□ 0.35
PTPRF-216ENST00000617451 CCDC160A6NGH7 325 aa17.23■□□□□ 0.35
PTPRF-216ENST00000617451 MITD1Q8WV92 249 aa17.23■□□□□ 0.35
PTPRF-216ENST00000617451 MRPS16Q9Y3D3 137 aaKnown RBP17.23■□□□□ 0.35
PTPRF-216ENST00000617451 TRAV12-3A0A0B4J271 114 aa17.22■□□□□ 0.35
PTPRF-216ENST00000617451 LINC00854A0A1B0GVQ3 168 aa17.22■□□□□ 0.35
PTPRF-216ENST00000617451 J3KRW8 73 aa17.22■□□□□ 0.35
PTPRF-216ENST00000617451 BTF3P20290 206 aaKnown RBP17.22■□□□□ 0.35
PTPRF-216ENST00000617451 BTCP35070 178 aa17.22■□□□□ 0.35
PTPRF-216ENST00000617451 DAZ2Q13117 558 aaKnown RBP17.22■□□□□ 0.35
PTPRF-216ENST00000617451 ZNF431Q8TF32 576 aaPredicted RBP17.22■□□□□ 0.35
PTPRF-216ENST00000617451 DNAJC4Q9NNZ3 241 aa17.22■□□□□ 0.35
PTPRF-216ENST00000617451 NPIPB6E9PJ23 425 aa17.21■□□□□ 0.35
PTPRF-216ENST00000617451 LEPP41159 167 aa17.21■□□□□ 0.35
PTPRF-216ENST00000617451 KRTAP10-2P60368 255 aa17.21■□□□□ 0.35
PTPRF-216ENST00000617451 GUK1Q16774 197 aa17.21■□□□□ 0.35
PTPRF-216ENST00000617451 PYGO2Q9BRQ0 406 aa17.21■□□□□ 0.35
PTPRF-216ENST00000617451 TMPRSS5Q9H3S3 457 aa17.21■□□□□ 0.35
PTPRF-216ENST00000617451 CAMLGP49069 296 aa17.2■□□□□ 0.34
PTPRF-216ENST00000617451 Q6ZTI0 123 aa17.2■□□□□ 0.34
PTPRF-216ENST00000617451 TRAV5A0A0B4J249 113 aa17.19■□□□□ 0.34
PTPRF-216ENST00000617451 RAB31Q13636 194 aa17.19■□□□□ 0.34
PTPRF-216ENST00000617451 Q6ZRG5 221 aa17.19■□□□□ 0.34
PTPRF-216ENST00000617451 SDHCQ99643 169 aaPredicted RBP17.19■□□□□ 0.34
PTPRF-216ENST00000617451 SCRT2Q9NQ03 307 aa17.19■□□□□ 0.34
PTPRF-216ENST00000617451 CENPXA8MT69 81 aa17.18■□□□□ 0.34
PTPRF-216ENST00000617451 NRARPQ7Z6K4 114 aa17.18■□□□□ 0.34
PTPRF-216ENST00000617451 RBM38Q9H0Z9 239 aaKnown RBP17.18■□□□□ 0.34
PTPRF-216ENST00000617451 ZNF586Q9NXT0 402 aa17.18■□□□□ 0.34
PTPRF-216ENST00000617451 L7N2F9 121 aa17.17■□□□□ 0.34
PTPRF-216ENST00000617451 VAMP2P63027 116 aa17.17■□□□□ 0.34
PTPRF-216ENST00000617451 MIC13Q5XKP0 118 aa17.17■□□□□ 0.34
PTPRF-216ENST00000617451 VSIG2Q96IQ7 327 aa17.17■□□□□ 0.34
PTPRF-216ENST00000617451 A0A096LPF7 62 aa17.16■□□□□ 0.34
PTPRF-216ENST00000617451 ZNF253O75346 499 aa17.16■□□□□ 0.34
PTPRF-216ENST00000617451 OR1L4Q8NGR5 311 aa17.16■□□□□ 0.34
PTPRF-216ENST00000617451 C18orf15Q96N68 181 aa17.16■□□□□ 0.34
PTPRF-216ENST00000617451 CCSO14618 274 aa17.15■□□□□ 0.34
PTPRF-216ENST00000617451 SLC25A5P05141 298 aaKnown RBP17.15■□□□□ 0.34
PTPRF-216ENST00000617451 CNPY1Q3B7I2 92 aa17.15■□□□□ 0.34
PTPRF-216ENST00000617451 C11orf72Q8NBR9 251 aa17.15■□□□□ 0.34
PTPRF-216ENST00000617451 MRPL53Q96EL3 112 aaKnown RBP17.15■□□□□ 0.34
PTPRF-216ENST00000617451 PFDN5Q99471 154 aa17.15■□□□□ 0.34
PTPRF-216ENST00000617451 GSN-AS1Q9NRJ2 163 aa17.15■□□□□ 0.34
PTPRF-216ENST00000617451 WDR83OSQ9Y284 106 aa17.15■□□□□ 0.34
PTPRF-216ENST00000617451 TRGV2A0A075B6R0 118 aa17.14■□□□□ 0.33
PTPRF-216ENST00000617451 CST7O76096 145 aa17.14■□□□□ 0.33
PTPRF-216ENST00000617451 BCAP31P51572 246 aa17.14■□□□□ 0.33
PTPRF-216ENST00000617451 ZNF846Q147U1 533 aa17.14■□□□□ 0.33
PTPRF-216ENST00000617451 ZNF680Q8NEM1 530 aa17.14■□□□□ 0.33
PTPRF-216ENST00000617451 C11orf1Q9H5F2 150 aa17.14■□□□□ 0.33
PTPRF-216ENST00000617451 UQCC1Q9NVA1 299 aa17.14■□□□□ 0.33
PTPRF-216ENST00000617451 LSM5Q9Y4Y9 91 aaKnown RBP17.14■□□□□ 0.33
PTPRF-216ENST00000617451 C7orf71A4D174 169 aa17.13■□□□□ 0.33
PTPRF-216ENST00000617451 M0R3E3 92 aa17.13■□□□□ 0.33
PTPRF-216ENST00000617451 ZNF324O75467 553 aaPredicted RBP17.13■□□□□ 0.33
PTPRF-216ENST00000617451 CAV2P51636 162 aa17.13■□□□□ 0.33
PTPRF-216ENST00000617451 LINC00315P59091 139 aa17.13■□□□□ 0.33
PTPRF-216ENST00000617451 LINC00467Q9BRT7 94 aa17.13■□□□□ 0.33
PTPRF-216ENST00000617451 HERC1Q15751 4861 aa17.12■□□□□ 0.33
PTPRF-216ENST00000617451 TRBV19A0A075B6N1 114 aa17.12■□□□□ 0.33
PTPRF-216ENST00000617451 KLLNB2CW77 178 aa17.12■□□□□ 0.33
PTPRF-216ENST00000617451 IL7P13232 177 aa17.12■□□□□ 0.33
PTPRF-216ENST00000617451 RPL29P47914 159 aaKnown RBP17.12■□□□□ 0.33
PTPRF-216ENST00000617451 ERCC8Q13216 396 aa17.12■□□□□ 0.33
PTPRF-216ENST00000617451 VWC2Q2TAL6 325 aa17.12■□□□□ 0.33
PTPRF-216ENST00000617451 Q6ZRN7 208 aaPredicted RBP17.12■□□□□ 0.33
PTPRF-216ENST00000617451 FAM19A4Q96LR4 140 aa17.12■□□□□ 0.33
PTPRF-216ENST00000617451 C20orf85Q9H1P6 137 aa17.12■□□□□ 0.33
PTPRF-216ENST00000617451 SLC39A9Q9NUM3 307 aa17.12■□□□□ 0.33
PTPRF-216ENST00000617451 FAM24AA6NFZ4 105 aa17.11■□□□□ 0.33
PTPRF-216ENST00000617451 FAM25EA8MYX2 175 aa17.11■□□□□ 0.33
PTPRF-216ENST00000617451 ANXA2RQ3ZCQ2 193 aa17.11■□□□□ 0.33
PTPRF-216ENST00000617451 C12orf45Q8N5I9 185 aaPredicted RBP17.11■□□□□ 0.33
PTPRF-216ENST00000617451 LINC00477Q96M19 166 aa17.11■□□□□ 0.33
PTPRF-216ENST00000617451 FUT9Q9Y231 359 aa17.11■□□□□ 0.33
PTPRF-216ENST00000617451 TRGV1A0A0A0MS02 117 aa17.1■□□□□ 0.33
PTPRF-216ENST00000617451 NDUFB4O95168 129 aa17.1■□□□□ 0.33
PTPRF-216ENST00000617451 CD300CQ08708 224 aa17.1■□□□□ 0.33
PTPRF-216ENST00000617451 EIF4E3Q8N5X7 224 aaKnown RBP17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 97 ms