RNA–Protein interactions for RNA: ENST00000616973.4

NR1H3-235, Transcript of nuclear receptor subfamily 1 group H member 3, humanhuman

TSL 1 (best) BASIC

Gene NR1H3, Length 1,919 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H3-235ENST00000616973 USMG5Q96IX5 58 aa12.13□□□□□ -0.47
NR1H3-235ENST00000616973 C8orf49Q96NF6 230 aa12.13□□□□□ -0.47
NR1H3-235ENST00000616973 ALKBH7Q9BT30 221 aaPredicted RBP12.13□□□□□ -0.47
NR1H3-235ENST00000616973 LINC00527Q9UJ94 153 aa12.13□□□□□ -0.47
NR1H3-235ENST00000616973 ZNF580Q9UK33 172 aa12.13□□□□□ -0.47
NR1H3-235ENST00000616973 IGKV2-40A0A087WW87 121 aaPredicted RBP12.12□□□□□ -0.47
NR1H3-235ENST00000616973 IGKV2D-40P01614 121 aaPredicted RBP12.12□□□□□ -0.47
NR1H3-235ENST00000616973 Q6AWC8 147 aa12.12□□□□□ -0.47
NR1H3-235ENST00000616973 PRR25Q96S07 402 aa12.12□□□□□ -0.47
NR1H3-235ENST00000616973 USP9XQ93008 2570 aaPredicted RBP12.12□□□□□ -0.47
NR1H3-235ENST00000616973 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.12□□□□□ -0.472e-6■■■■■ 35.7
NR1H3-235ENST00000616973 GPX1P07203 203 aa12.11□□□□□ -0.47
NR1H3-235ENST00000616973 LCN12Q6JVE5 192 aa12.11□□□□□ -0.47
NR1H3-235ENST00000616973 GATD1Q8NB37 220 aa12.11□□□□□ -0.47
NR1H3-235ENST00000616973 RCHY1Q96PM5 261 aa12.11□□□□□ -0.47
NR1H3-235ENST00000616973 SAMD10Q9BYL1 202 aa12.11□□□□□ -0.47
NR1H3-235ENST00000616973 SPTAN1Q13813 2472 aaKnown RBP12.11□□□□□ -0.47
NR1H3-235ENST00000616973 A0A1W2PS18 150 aa12.11□□□□□ -0.47
NR1H3-235ENST00000616973 RBAKDNA6NC62 111 aa12.11□□□□□ -0.47
NR1H3-235ENST00000616973 TSTD3H0UI37 97 aa12.11□□□□□ -0.47
NR1H3-235ENST00000616973 ARL3P36405 182 aa12.11□□□□□ -0.47
NR1H3-235ENST00000616973 Q6ZWC4 215 aa12.11□□□□□ -0.47
NR1H3-235ENST00000616973 SIGLECL1Q8N7X8 197 aa12.11□□□□□ -0.47
NR1H3-235ENST00000616973 MRPL53Q96EL3 112 aaKnown RBP12.11□□□□□ -0.47
NR1H3-235ENST00000616973 ASCL2Q99929 193 aa12.11□□□□□ -0.47
NR1H3-235ENST00000616973 SSBP4Q9BWG4 385 aaPredicted RBP12.11□□□□□ -0.47
NR1H3-235ENST00000616973 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.1□□□□□ -0.47
NR1H3-235ENST00000616973 A0A1B0GW15 77 aa12.1□□□□□ -0.47
NR1H3-235ENST00000616973 LOXL1Q08397 574 aaPredicted RBP12.1□□□□□ -0.47
NR1H3-235ENST00000616973 FAM162BQ5T6X4 162 aa12.1□□□□□ -0.47
NR1H3-235ENST00000616973 NAGKQ9UJ70 344 aa12.1□□□□□ -0.47
NR1H3-235ENST00000616973 A0A1B0GUT8 65 aa12.09□□□□□ -0.47
NR1H3-235ENST00000616973 NDUFA4O00483 81 aa12.09□□□□□ -0.47
NR1H3-235ENST00000616973 HLA-DMBP28068 263 aa12.09□□□□□ -0.47
NR1H3-235ENST00000616973 VGLL1Q99990 258 aa12.09□□□□□ -0.47
NR1H3-235ENST00000616973 FLNCQ14315 2725 aa12.09□□□□□ -0.47
NR1H3-235ENST00000616973 ASH1LQ9NR48 2969 aaKnown RBP12.09□□□□□ -0.47
NR1H3-235ENST00000616973 SH2D1AO60880 128 aa12.09□□□□□ -0.47
NR1H3-235ENST00000616973 ZNF324O75467 553 aaPredicted RBP12.09□□□□□ -0.47
NR1H3-235ENST00000616973 SCGB1D1O95968 90 aa12.09□□□□□ -0.47
NR1H3-235ENST00000616973 IGLV1-40P01703 118 aa12.09□□□□□ -0.47
NR1H3-235ENST00000616973 BLCAPP62952 87 aa12.09□□□□□ -0.47
NR1H3-235ENST00000616973 SRSF2Q01130 221 aaKnown RBP12.09□□□□□ -0.47
NR1H3-235ENST00000616973 RIGQ13278 110 aa12.09□□□□□ -0.47
NR1H3-235ENST00000616973 A1L4Q6 167 aa12.08□□□□□ -0.48
NR1H3-235ENST00000616973 PRB4P10163 310 aaPredicted RBP12.08□□□□□ -0.48
NR1H3-235ENST00000616973 CFHR3Q02985 330 aa12.08□□□□□ -0.48
NR1H3-235ENST00000616973 IGFL4Q6B9Z1 124 aa12.08□□□□□ -0.48
NR1H3-235ENST00000616973 ZNF664Q8N3J9 261 aa12.08□□□□□ -0.48
NR1H3-235ENST00000616973 BEX4Q9NWD9 120 aaPredicted RBP12.08□□□□□ -0.48
NR1H3-235ENST00000616973 CLEC5AQ9NY25 188 aa12.08□□□□□ -0.48
NR1H3-235ENST00000616973 CR1P17927 2039 aa12.08□□□□□ -0.48
NR1H3-235ENST00000616973 IGHV3-66A0A0C4DH42 116 aa12.07□□□□□ -0.48
NR1H3-235ENST00000616973 TMEM189A5PLL7 270 aa12.07□□□□□ -0.48
NR1H3-235ENST00000616973 ZNF705FA8MVS1 300 aaPredicted RBP12.07□□□□□ -0.48
NR1H3-235ENST00000616973 BMI1P35226 326 aa12.07□□□□□ -0.48
NR1H3-235ENST00000616973 AMTP48728 403 aa12.07□□□□□ -0.48
NR1H3-235ENST00000616973 GLMPQ8WWB7 406 aa12.07□□□□□ -0.48
NR1H3-235ENST00000616973 NDFIP1Q9BT67 221 aa12.07□□□□□ -0.48
NR1H3-235ENST00000616973 LOC102724200A0A096LPH7 203 aaPredicted RBP12.07□□□□□ -0.48
NR1H3-235ENST00000616973 RPS20P60866 119 aaKnown RBP12.07□□□□□ -0.48
NR1H3-235ENST00000616973 LRRC75A-AS1Q8N1F1 130 aa12.07□□□□□ -0.48
NR1H3-235ENST00000616973 PRO1933Q9H354 126 aa12.07□□□□□ -0.48
NR1H3-235ENST00000616973 TRAV8-2A0A0B4J237 113 aa12.06□□□□□ -0.48
NR1H3-235ENST00000616973 A0A0G2JLM5 398 aa12.06□□□□□ -0.48
NR1H3-235ENST00000616973 ZNF207O43670 478 aaKnown RBP12.06□□□□□ -0.48
NR1H3-235ENST00000616973 ARMS2P0C7Q2 107 aa12.06□□□□□ -0.48
NR1H3-235ENST00000616973 DEFB112Q30KQ8 113 aa12.06□□□□□ -0.48
NR1H3-235ENST00000616973 Q6ZS46 218 aa12.06□□□□□ -0.48
NR1H3-235ENST00000616973 NRN1Q9NPD7 142 aa12.06□□□□□ -0.48
NR1H3-235ENST00000616973 TGFAP01135 160 aa12.05□□□□□ -0.48
NR1H3-235ENST00000616973 PF4V1P10720 104 aa12.05□□□□□ -0.48
NR1H3-235ENST00000616973 DMRTA1Q5VZB9 504 aa12.05□□□□□ -0.48
NR1H3-235ENST00000616973 C8orf86Q6ZUL3 223 aa12.05□□□□□ -0.48
NR1H3-235ENST00000616973 Q8TAT8 98 aa12.05□□□□□ -0.48
NR1H3-235ENST00000616973 BORCS7Q96B45 105 aa12.05□□□□□ -0.48
NR1H3-235ENST00000616973 IGHV3OR16-13A0A075B7E8 117 aa12.05□□□□□ -0.48
NR1H3-235ENST00000616973 IGHV3-74A0A0B4J1X5 117 aa12.05□□□□□ -0.48
NR1H3-235ENST00000616973 PRAC2D3DTV9 90 aa12.05□□□□□ -0.48
NR1H3-235ENST00000616973 FSHBP01225 129 aa12.05□□□□□ -0.48
NR1H3-235ENST00000616973 TRBV12-3P01733 135 aa12.05□□□□□ -0.48
NR1H3-235ENST00000616973 DDTP30046 118 aa12.05□□□□□ -0.48
NR1H3-235ENST00000616973 RNF182Q8N6D2 247 aa12.05□□□□□ -0.48
NR1H3-235ENST00000616973 KLK15Q9H2R5 256 aa12.05□□□□□ -0.48
NR1H3-235ENST00000616973 SPG11Q96JI7 2443 aa12.04□□□□□ -0.48
NR1H3-235ENST00000616973 IGHV3-49A0A0A0MS15 119 aa12.04□□□□□ -0.48
NR1H3-235ENST00000616973 PMCHP20382 165 aa12.04□□□□□ -0.48
NR1H3-235ENST00000616973 ZNF80P51504 273 aaPredicted RBP12.04□□□□□ -0.48
NR1H3-235ENST00000616973 ZNF493Q6ZR52 646 aa12.04□□□□□ -0.48
NR1H3-235ENST00000616973 NIT1Q86X76 327 aa12.04□□□□□ -0.48
NR1H3-235ENST00000616973 OR4X2Q8NGF9 303 aa12.04□□□□□ -0.48
NR1H3-235ENST00000616973 PPP1R14DQ9NXH3 145 aa12.04□□□□□ -0.48
NR1H3-235ENST00000616973 ZNF462Q96JM2 2506 aa12.04□□□□□ -0.48
NR1H3-235ENST00000616973 MYO18BQ8IUG5 2567 aa12.04□□□□□ -0.48
NR1H3-235ENST00000616973 IGHV4-59P01825 116 aa12.03□□□□□ -0.48
NR1H3-235ENST00000616973 DEFB113Q30KQ7 82 aa12.03□□□□□ -0.48
NR1H3-235ENST00000616973 TEX43Q6ZNM6 134 aa12.03□□□□□ -0.48
NR1H3-235ENST00000616973 C9orf139Q6ZV77 190 aa12.03□□□□□ -0.48
NR1H3-235ENST00000616973 FABP5P3A8MUU1 101 aa12.03□□□□□ -0.48
NR1H3-235ENST00000616973 HSBP1O75506 76 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms