RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 HIGD1AQ9Y241 93 aa13.6□□□□□ -0.23
CDX1-202ENST00000616154 PKHD1P08F94 4074 aa13.59□□□□□ -0.23
CDX1-202ENST00000616154 HYPMO75409 117 aa13.59□□□□□ -0.23
CDX1-202ENST00000616154 EIF5AL1Q6IS14 154 aaKnown RBP13.59□□□□□ -0.23
CDX1-202ENST00000616154 ZNF705AQ6ZN79 300 aaPredicted RBP13.59□□□□□ -0.23
CDX1-202ENST00000616154 TMED6Q8WW62 240 aa13.59□□□□□ -0.23
CDX1-202ENST00000616154 NEU1Q99519 415 aa13.59□□□□□ -0.23
CDX1-202ENST00000616154 SLC25A22Q9H936 323 aa13.59□□□□□ -0.23
CDX1-202ENST00000616154 MBP02144 154 aa13.58□□□□□ -0.24
CDX1-202ENST00000616154 OR5G3P0C626 314 aa13.58□□□□□ -0.24
CDX1-202ENST00000616154 M6PRP20645 277 aa13.58□□□□□ -0.24
CDX1-202ENST00000616154 GCSAMLQ5JQS6 135 aa13.58□□□□□ -0.24
CDX1-202ENST00000616154 S100A7AQ86SG5 101 aa13.58□□□□□ -0.24
CDX1-202ENST00000616154 OR1L4Q8NGR5 311 aa13.58□□□□□ -0.24
CDX1-202ENST00000616154 LINC00052Q96N35 136 aa13.58□□□□□ -0.24
CDX1-202ENST00000616154 PFDN5Q99471 154 aa13.58□□□□□ -0.24
CDX1-202ENST00000616154 DNAJC4Q9NNZ3 241 aa13.58□□□□□ -0.24
CDX1-202ENST00000616154 A0A087X0K7 114 aa13.57□□□□□ -0.24
CDX1-202ENST00000616154 A0A0J9YX75 114 aa13.57□□□□□ -0.24
CDX1-202ENST00000616154 UMAD1C9J7I0 102 aa13.57□□□□□ -0.24
CDX1-202ENST00000616154 P0DMU3 169 aa13.57□□□□□ -0.24
CDX1-202ENST00000616154 FAM231AP0DMU4 169 aa13.57□□□□□ -0.24
CDX1-202ENST00000616154 FAM231CP0DMU5 169 aa13.57□□□□□ -0.24
CDX1-202ENST00000616154 RPL7P18124 248 aaKnown RBP13.57□□□□□ -0.24
CDX1-202ENST00000616154 DEFB1P60022 68 aa13.57□□□□□ -0.24
CDX1-202ENST00000616154 ACOT6Q3I5F7 207 aaPredicted RBP13.57□□□□□ -0.24
CDX1-202ENST00000616154 C20orf173Q96LM9 149 aa13.57□□□□□ -0.24
CDX1-202ENST00000616154 NDUFAF3Q9BU61 184 aa13.57□□□□□ -0.24
CDX1-202ENST00000616154 RPRMQ9NS64 109 aa13.57□□□□□ -0.24
CDX1-202ENST00000616154 DOK5Q9P104 306 aa13.57□□□□□ -0.24
CDX1-202ENST00000616154 RNF24Q9Y225 148 aa13.57□□□□□ -0.24
CDX1-202ENST00000616154 ZNF705FA8MVS1 300 aaPredicted RBP13.56□□□□□ -0.24
CDX1-202ENST00000616154 MRPS12O15235 138 aaKnown RBP13.56□□□□□ -0.24
CDX1-202ENST00000616154 COX7A2P2O60397 106 aa13.56□□□□□ -0.24
CDX1-202ENST00000616154 ZNF705DP0CH99 300 aaPredicted RBP13.56□□□□□ -0.24
CDX1-202ENST00000616154 ZNF705BP0CI00 300 aaPredicted RBP13.56□□□□□ -0.24
CDX1-202ENST00000616154 RAB2AP61019 212 aa13.56□□□□□ -0.24
CDX1-202ENST00000616154 POM121L12Q8N7R1 296 aa13.56□□□□□ -0.24
CDX1-202ENST00000616154 C16orf92Q96LL3 132 aa13.56□□□□□ -0.24
CDX1-202ENST00000616154 PCLOQ9Y6V0 5065 aa13.55□□□□□ -0.24
CDX1-202ENST00000616154 TRAV8-2A0A0B4J237 113 aa13.55□□□□□ -0.24
CDX1-202ENST00000616154 TMEM189A5PLL7 270 aa13.55□□□□□ -0.24
CDX1-202ENST00000616154 SMIM9A6NGZ8 99 aa13.55□□□□□ -0.24
CDX1-202ENST00000616154 SULT1A2P50226 295 aa13.55□□□□□ -0.24
CDX1-202ENST00000616154 C10orf113Q5VZT2 155 aa13.55□□□□□ -0.24
CDX1-202ENST00000616154 TEX261Q6UWH6 196 aa13.55□□□□□ -0.24
CDX1-202ENST00000616154 UHRF2Q96PU4 802 aa13.55□□□□□ -0.24
CDX1-202ENST00000616154 MRPL32Q9BYC8 188 aaKnown RBP13.55□□□□□ -0.24
CDX1-202ENST00000616154 A0A1B0GVY2 172 aa13.54□□□□□ -0.24
CDX1-202ENST00000616154 SPART-AS1P0CW21 52 aa13.54□□□□□ -0.24
CDX1-202ENST00000616154 RAB5CP51148 216 aa13.54□□□□□ -0.24
CDX1-202ENST00000616154 AKR1C8PQ5T2L2 129 aa13.54□□□□□ -0.24
CDX1-202ENST00000616154 MORN5Q5VZ52 161 aa13.54□□□□□ -0.24
CDX1-202ENST00000616154 EBLN2Q6P2I7 272 aa13.54□□□□□ -0.24
CDX1-202ENST00000616154 DPPA3Q6W0C5 159 aa13.54□□□□□ -0.24
CDX1-202ENST00000616154 LINC00305Q7Z4B0 112 aa13.54□□□□□ -0.24
CDX1-202ENST00000616154 OR10G4Q8NGN3 311 aa13.54□□□□□ -0.24
CDX1-202ENST00000616154 OR10G9Q8NGN4 311 aa13.54□□□□□ -0.24
CDX1-202ENST00000616154 OR10G7Q8NGN6 311 aa13.54□□□□□ -0.24
CDX1-202ENST00000616154 FAM78BQ5VT40 261 aa13.53□□□□□ -0.24
CDX1-202ENST00000616154 AMTNQ6UX39 209 aa13.53□□□□□ -0.24
CDX1-202ENST00000616154 ALKAL2Q6UX46 152 aa13.53□□□□□ -0.24
CDX1-202ENST00000616154 ZNF680Q8NEM1 530 aa13.53□□□□□ -0.24
CDX1-202ENST00000616154 FUT9Q9Y231 359 aa13.53□□□□□ -0.24
CDX1-202ENST00000616154 F6UB75 175 aa13.52□□□□□ -0.25
CDX1-202ENST00000616154 IGKV3-20P01619 116 aa13.52□□□□□ -0.25
CDX1-202ENST00000616154 FXYD7P58549 80 aa13.52□□□□□ -0.25
CDX1-202ENST00000616154 RHOBP62745 196 aa13.52□□□□□ -0.25
CDX1-202ENST00000616154 PSG9Q00887 426 aa13.52□□□□□ -0.25
CDX1-202ENST00000616154 IFITM2Q01629 132 aa13.52□□□□□ -0.25
CDX1-202ENST00000616154 ZNF726P1Q15940 193 aa13.52□□□□□ -0.25
CDX1-202ENST00000616154 FAM167A-AS1Q96KT0 104 aa13.52□□□□□ -0.25
CDX1-202ENST00000616154 TEX48A0A1B0GUV7 120 aa13.51□□□□□ -0.25
CDX1-202ENST00000616154 MIR17HGQ75NE6 70 aa13.51□□□□□ -0.25
CDX1-202ENST00000616154 FAM210BQ96KR6 192 aa13.51□□□□□ -0.25
CDX1-202ENST00000616154 SLC35B3Q9H1N7 401 aa13.51□□□□□ -0.25
CDX1-202ENST00000616154 PKD1P98161 4303 aa13.5□□□□□ -0.25
CDX1-202ENST00000616154 DNAH11Q96DT5 4516 aa13.5□□□□□ -0.25
CDX1-202ENST00000616154 CDC34P49427 236 aaPredicted RBP13.5□□□□□ -0.25
CDX1-202ENST00000616154 FHITP49789 147 aa13.5□□□□□ -0.25
CDX1-202ENST00000616154 EMP1P54849 157 aa13.5□□□□□ -0.25
CDX1-202ENST00000616154 FAM74A1Q5RGS3 127 aa13.5□□□□□ -0.25
CDX1-202ENST00000616154 SSX7Q7RTT5 188 aa13.5□□□□□ -0.25
CDX1-202ENST00000616154 OR4B1Q8NGF8 309 aa13.5□□□□□ -0.25
CDX1-202ENST00000616154 RAB24Q969Q5 203 aa13.5□□□□□ -0.25
CDX1-202ENST00000616154 ACTR3CQ9C0K3 210 aaPredicted RBP13.5□□□□□ -0.25
CDX1-202ENST00000616154 DKK2Q9UBU2 259 aa13.5□□□□□ -0.25
CDX1-202ENST00000616154 DYNC1H1Q14204 4646 aaKnown RBP13.49□□□□□ -0.25
CDX1-202ENST00000616154 IGHV3OR16-12A0A075B7B8 117 aa13.49□□□□□ -0.25
CDX1-202ENST00000616154 CTXND1A0A1B0GTU2 59 aa13.49□□□□□ -0.25
CDX1-202ENST00000616154 RTL8CO15255 209 aa13.49□□□□□ -0.25
CDX1-202ENST00000616154 DUSP14O95147 198 aaKnown RBP13.49□□□□□ -0.25
CDX1-202ENST00000616154 IFNA7P01567 189 aa13.49□□□□□ -0.25
CDX1-202ENST00000616154 STAG3L2P0CL84 134 aa13.49□□□□□ -0.25
CDX1-202ENST00000616154 STAG3L3P0CL85 134 aa13.49□□□□□ -0.25
CDX1-202ENST00000616154 LGALS9BQ3B8N2 356 aa13.49□□□□□ -0.25
CDX1-202ENST00000616154 FAM122CQ6P4D5 195 aa13.49□□□□□ -0.25
CDX1-202ENST00000616154 RNF141Q8WVD5 230 aa13.49□□□□□ -0.25
CDX1-202ENST00000616154 MBD3L1Q8WWY6 194 aa13.49□□□□□ -0.25
CDX1-202ENST00000616154 SLC25A2Q9BXI2 301 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms