RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 KHDC3LQ587J8 217 aa12.11□□□□□ -0.47
CCDC28A-202ENST00000611852 FAM74A1Q5RGS3 127 aa12.11□□□□□ -0.47
CCDC28A-202ENST00000611852 FAM122CQ6P4D5 195 aa12.11□□□□□ -0.47
CCDC28A-202ENST00000611852 RPP25LQ8N5L8 163 aaKnown RBP12.11□□□□□ -0.47
CCDC28A-202ENST00000611852 OR4B1Q8NGF8 309 aa12.11□□□□□ -0.47
CCDC28A-202ENST00000611852 BLNKQ8WV28 456 aa12.11□□□□□ -0.47
CCDC28A-202ENST00000611852 RNF141Q8WVD5 230 aa12.11□□□□□ -0.47
CCDC28A-202ENST00000611852 RNF183Q96D59 192 aa12.11□□□□□ -0.47
CCDC28A-202ENST00000611852 FXYD5Q96DB9 178 aa12.11□□□□□ -0.47
CCDC28A-202ENST00000611852 SPRY2O43597 315 aa12.1□□□□□ -0.47
CCDC28A-202ENST00000611852 IGKV3-20P01619 116 aa12.1□□□□□ -0.47
CCDC28A-202ENST00000611852 MBP02144 154 aa12.1□□□□□ -0.47
CCDC28A-202ENST00000611852 NBEAP1P0C6P0 100 aa12.1□□□□□ -0.47
CCDC28A-202ENST00000611852 NUTF2P61970 127 aaKnown RBP12.1□□□□□ -0.47
CCDC28A-202ENST00000611852 RPUSD4Q96CM3 377 aaKnown RBP12.1□□□□□ -0.47
CCDC28A-202ENST00000611852 CLEC5AQ9NY25 188 aa12.1□□□□□ -0.47
CCDC28A-202ENST00000611852 ZNF705FA8MVS1 300 aaPredicted RBP12.09□□□□□ -0.47
CCDC28A-202ENST00000611852 ATP6V1G1O75348 118 aa12.09□□□□□ -0.47
CCDC28A-202ENST00000611852 NMBP08949 121 aa12.09□□□□□ -0.47
CCDC28A-202ENST00000611852 SEC11BP0C7V7 166 aa12.09□□□□□ -0.47
CCDC28A-202ENST00000611852 ZNF705DP0CH99 300 aaPredicted RBP12.09□□□□□ -0.47
CCDC28A-202ENST00000611852 ZNF705BP0CI00 300 aaPredicted RBP12.09□□□□□ -0.47
CCDC28A-202ENST00000611852 TMEM41BQ5BJD5 291 aa12.09□□□□□ -0.47
CCDC28A-202ENST00000611852 A8MTW9 85 aa12.08□□□□□ -0.48
CCDC28A-202ENST00000611852 PRB4P10163 310 aaPredicted RBP12.08□□□□□ -0.48
CCDC28A-202ENST00000611852 CDC34P49427 236 aaPredicted RBP12.08□□□□□ -0.48
CCDC28A-202ENST00000611852 CNN1P51911 297 aaKnown RBP12.08□□□□□ -0.48
CCDC28A-202ENST00000611852 PSG9Q00887 426 aa12.08□□□□□ -0.48
CCDC28A-202ENST00000611852 OR8A1Q8NGG7 326 aa12.08□□□□□ -0.48
CCDC28A-202ENST00000611852 PCNPQ8WW12 178 aaKnown RBP12.08□□□□□ -0.48
CCDC28A-202ENST00000611852 HMGB3O15347 200 aaKnown RBP12.07□□□□□ -0.48
CCDC28A-202ENST00000611852 DUSP14O95147 198 aaKnown RBP12.07□□□□□ -0.48
CCDC28A-202ENST00000611852 UBE2L3P68036 154 aaKnown RBP12.07□□□□□ -0.48
CCDC28A-202ENST00000611852 AMTNQ6UX39 209 aa12.07□□□□□ -0.48
CCDC28A-202ENST00000611852 PQLC2Q6ZP29 291 aa12.07□□□□□ -0.48
CCDC28A-202ENST00000611852 SLC7A5P1Q8MH63 180 aa12.07□□□□□ -0.48
CCDC28A-202ENST00000611852 CSNK1G2-AS1Q8NCQ2 148 aa12.07□□□□□ -0.48
CCDC28A-202ENST00000611852 RAB24Q969Q5 203 aa12.07□□□□□ -0.48
CCDC28A-202ENST00000611852 LINC00862A6NCI5 91 aa12.06□□□□□ -0.48
CCDC28A-202ENST00000611852 PRAC2D3DTV9 90 aa12.06□□□□□ -0.48
CCDC28A-202ENST00000611852 STAG3L2P0CL84 134 aa12.06□□□□□ -0.48
CCDC28A-202ENST00000611852 STAG3L3P0CL85 134 aa12.06□□□□□ -0.48
CCDC28A-202ENST00000611852 SULT1A2P50226 295 aa12.06□□□□□ -0.48
CCDC28A-202ENST00000611852 HIST1H1AQ02539 215 aaPredicted RBP12.06□□□□□ -0.48
CCDC28A-202ENST00000611852 EXOC3-AS1Q8N2X6 119 aa12.06□□□□□ -0.48
CCDC28A-202ENST00000611852 C1QTNF4Q9BXJ3 329 aa12.06□□□□□ -0.48
CCDC28A-202ENST00000611852 SLC35B3Q9H1N7 401 aa12.06□□□□□ -0.48
CCDC28A-202ENST00000611852 XCL2Q9UBD3 114 aa12.06□□□□□ -0.48
CCDC28A-202ENST00000611852 M0R3E3 92 aa12.06□□□□□ -0.48
CCDC28A-202ENST00000611852 RAB5CP51148 216 aa12.06□□□□□ -0.48
CCDC28A-202ENST00000611852 FXYD7P58549 80 aa12.06□□□□□ -0.48
CCDC28A-202ENST00000611852 MRPL53Q96EL3 112 aaKnown RBP12.06□□□□□ -0.48
CCDC28A-202ENST00000611852 WWC2-AS2Q96NR7 200 aa12.06□□□□□ -0.48
CCDC28A-202ENST00000611852 ACTR3CQ9C0K3 210 aaPredicted RBP12.06□□□□□ -0.48
CCDC28A-202ENST00000611852 AAMDCQ9H7C9 122 aa12.06□□□□□ -0.48
CCDC28A-202ENST00000611852 EDA2RQ9HAV5 297 aa12.06□□□□□ -0.48
CCDC28A-202ENST00000611852 PRELID1Q9Y255 219 aa12.06□□□□□ -0.48
CCDC28A-202ENST00000611852 ZNF705EA8MWA4 302 aaPredicted RBP12.05□□□□□ -0.48
CCDC28A-202ENST00000611852 UMAD1C9J7I0 102 aa12.05□□□□□ -0.48
CCDC28A-202ENST00000611852 ARL14EPLP0DKL9 152 aa12.05□□□□□ -0.48
CCDC28A-202ENST00000611852 ICAM4Q14773 271 aa12.05□□□□□ -0.48
CCDC28A-202ENST00000611852 AKR1C8PQ5T2L2 129 aa12.05□□□□□ -0.48
CCDC28A-202ENST00000611852 SSX7Q7RTT5 188 aa12.05□□□□□ -0.48
CCDC28A-202ENST00000611852 RARRES2Q99969 163 aa12.05□□□□□ -0.48
CCDC28A-202ENST00000611852 RANP62826 216 aaKnown RBP12.04□□□□□ -0.48
CCDC28A-202ENST00000611852 ZNF726P1Q15940 193 aa12.04□□□□□ -0.48
CCDC28A-202ENST00000611852 LYPD1Q8N2G4 141 aa12.04□□□□□ -0.48
CCDC28A-202ENST00000611852 OR11H2Q8NH07 326 aa12.04□□□□□ -0.48
CCDC28A-202ENST00000611852 BLOC1S1P78537 153 aa12.03□□□□□ -0.48
CCDC28A-202ENST00000611852 COMMD7Q86VX2 200 aa12.03□□□□□ -0.48
CCDC28A-202ENST00000611852 OR10J6PQ8NGY7 276 aa12.03□□□□□ -0.48
CCDC28A-202ENST00000611852 Q9H3A6 140 aa12.03□□□□□ -0.48
CCDC28A-202ENST00000611852 MED9Q9NWA0 146 aa12.03□□□□□ -0.48
CCDC28A-202ENST00000611852 CTXND1A0A1B0GTU2 59 aa12.02□□□□□ -0.48
CCDC28A-202ENST00000611852 PLA2G2EQ9NZK7 142 aa12.02□□□□□ -0.48
CCDC28A-202ENST00000611852 M0R2Z0 102 aa12.01□□□□□ -0.49
CCDC28A-202ENST00000611852 CXorf1O96002 111 aa12.01□□□□□ -0.49
CCDC28A-202ENST00000611852 GCHFRP30047 84 aa12.01□□□□□ -0.49
CCDC28A-202ENST00000611852 SPINK13Q1W4C9 94 aa12.01□□□□□ -0.49
CCDC28A-202ENST00000611852 SUN5Q8TC36 379 aa12.01□□□□□ -0.49
CCDC28A-202ENST00000611852 NPIPB6E9PJ23 425 aa12.01□□□□□ -0.49
CCDC28A-202ENST00000611852 DPPA3Q6W0C5 159 aa12.01□□□□□ -0.49
CCDC28A-202ENST00000611852 PPP1R14DQ9NXH3 145 aa12.01□□□□□ -0.49
CCDC28A-202ENST00000611852 X6R8D5 127 aa12.01□□□□□ -0.49
CCDC28A-202ENST00000611852 A0A0J9YWU9 116 aa12□□□□□ -0.49
CCDC28A-202ENST00000611852 CRXO43186 299 aaPredicted RBP12□□□□□ -0.49
CCDC28A-202ENST00000611852 AMBPP02760 352 aa12□□□□□ -0.49
CCDC28A-202ENST00000611852 FHITP49789 147 aa12□□□□□ -0.49
CCDC28A-202ENST00000611852 ZNF705AQ6ZN79 300 aaPredicted RBP12□□□□□ -0.49
CCDC28A-202ENST00000611852 FAM213BQ8TBF2 198 aa12□□□□□ -0.49
CCDC28A-202ENST00000611852 OTORQ9NRC9 128 aa12□□□□□ -0.49
CCDC28A-202ENST00000611852 IGKV2-40A0A087WW87 121 aaPredicted RBP11.99□□□□□ -0.49
CCDC28A-202ENST00000611852 IGKV2D-40P01614 121 aaPredicted RBP11.99□□□□□ -0.49
CCDC28A-202ENST00000611852 S100A1P23297 94 aa11.99□□□□□ -0.49
CCDC28A-202ENST00000611852 IGF2BP2-AS1Q96M15 143 aa11.99□□□□□ -0.49
CCDC28A-202ENST00000611852 TMEM167BQ9NRX6 74 aa11.99□□□□□ -0.49
CCDC28A-202ENST00000611852 TRAV12-2A0A075B6T6 113 aa11.98□□□□□ -0.49
CCDC28A-202ENST00000611852 PGPA6NDG6 321 aa11.98□□□□□ -0.49
CCDC28A-202ENST00000611852 CT45A10P0DMU9 189 aa11.98□□□□□ -0.49
CCDC28A-202ENST00000611852 CDKN1BP46527 198 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 86.9 ms