RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 UFSP1Q6NVU6 142 aa8.41□□□□□ -1.06
LIG1-220ENST00000601091 CTRLP40313 264 aa8.41□□□□□ -1.06
LIG1-220ENST00000601091 KCNS1Q96KK3 526 aa8.41□□□□□ -1.06
LIG1-220ENST00000601091 RHODO00212 210 aa8.41□□□□□ -1.06
LIG1-220ENST00000601091 C3orf79P0CE67 100 aa8.41□□□□□ -1.06
LIG1-220ENST00000601091 INSL3P51460 131 aa8.41□□□□□ -1.06
LIG1-220ENST00000601091 DLX6P56179 175 aa8.41□□□□□ -1.06
LIG1-220ENST00000601091 LOXL3P58215 753 aa8.41□□□□□ -1.06
LIG1-220ENST00000601091 HBBP68871 147 aa8.41□□□□□ -1.06
LIG1-220ENST00000601091 FOXE3Q13461 319 aa8.41□□□□□ -1.06
LIG1-220ENST00000601091 KIR3DS1Q14943 382 aa8.41□□□□□ -1.06
LIG1-220ENST00000601091 A0A1W2PPM0 123 aa8.4□□□□□ -1.06
LIG1-220ENST00000601091 HIGD1CA8MV81 97 aa8.4□□□□□ -1.06
LIG1-220ENST00000601091 LEPROTL1O95214 131 aa8.4□□□□□ -1.06
LIG1-220ENST00000601091 CX3CL1P78423 397 aa8.4□□□□□ -1.06
LIG1-220ENST00000601091 C17orf58Q2M2W7 97 aa8.4□□□□□ -1.06
LIG1-220ENST00000601091 TMEM97Q5BJF2 176 aa8.4□□□□□ -1.06
LIG1-220ENST00000601091 KLF17Q5JT82 389 aaPredicted RBP8.4□□□□□ -1.06
LIG1-220ENST00000601091 C10orf55Q5SWW7 151 aa8.4□□□□□ -1.06
LIG1-220ENST00000601091 C18orf15Q96N68 181 aa8.4□□□□□ -1.06
LIG1-220ENST00000601091 FAM236AA0A1B0GUQ0 79 aa8.4□□□□□ -1.06
LIG1-220ENST00000601091 FAM236BA0A1B0GV22 79 aa8.4□□□□□ -1.06
LIG1-220ENST00000601091 SH2D7A6NKC9 451 aaPredicted RBP8.4□□□□□ -1.06
LIG1-220ENST00000601091 RNASE2P10153 161 aaKnown RBP8.4□□□□□ -1.06
LIG1-220ENST00000601091 ZNF324O75467 553 aaPredicted RBP8.4□□□□□ -1.07
LIG1-220ENST00000601091 YPEL3P61236 119 aaPredicted RBP8.4□□□□□ -1.07
LIG1-220ENST00000601091 TMEM200BQ69YZ2 307 aa8.4□□□□□ -1.07
LIG1-220ENST00000601091 Q6AWC8 147 aa8.4□□□□□ -1.07
LIG1-220ENST00000601091 NEUROG1Q92886 237 aa8.4□□□□□ -1.07
LIG1-220ENST00000601091 PRELID3AQ96N28 172 aa8.4□□□□□ -1.07
LIG1-220ENST00000601091 EPDR1Q9UM22 224 aa8.4□□□□□ -1.07
LIG1-220ENST00000601091 PLXNB1O43157 2135 aa8.39□□□□□ -1.07
LIG1-220ENST00000601091 ZFHX4Q86UP3 3567 aa8.39□□□□□ -1.07
LIG1-220ENST00000601091 NPPCP23582 126 aa8.39□□□□□ -1.07
LIG1-220ENST00000601091 FOXA3P55318 350 aaPredicted RBP8.39□□□□□ -1.07
LIG1-220ENST00000601091 GOLT1AQ6ZVE7 132 aa8.39□□□□□ -1.07
LIG1-220ENST00000601091 TMEM167AQ8TBQ9 72 aa8.39□□□□□ -1.07
LIG1-220ENST00000601091 KLRD1Q13241 179 aa8.39□□□□□ -1.07
LIG1-220ENST00000601091 GAGE13Q4V321 117 aa8.39□□□□□ -1.07
LIG1-220ENST00000601091 BOD1L1Q8NFC6 3051 aa8.39□□□□□ -1.07
LIG1-220ENST00000601091 ABCA4P78363 2273 aa8.39□□□□□ -1.07
LIG1-220ENST00000601091 H0YJW9 148 aa8.39□□□□□ -1.07
LIG1-220ENST00000601091 OR5AL1P0C617 328 aa8.39□□□□□ -1.07
LIG1-220ENST00000601091 Q6ZS92 163 aa8.39□□□□□ -1.07
LIG1-220ENST00000601091 TM2D2Q9BX73 214 aa8.39□□□□□ -1.07
LIG1-220ENST00000601091 MALP21145 153 aa8.38□□□□□ -1.07
LIG1-220ENST00000601091 SRSF12Q8WXF0 261 aaKnown RBP8.38□□□□□ -1.07
LIG1-220ENST00000601091 RNASE6Q93091 150 aaKnown RBP8.38□□□□□ -1.07
LIG1-220ENST00000601091 TMEM133Q9H2Q1 129 aa8.38□□□□□ -1.07
LIG1-220ENST00000601091 SPANXB1Q9NS25 103 aaPredicted RBP8.38□□□□□ -1.07
LIG1-220ENST00000601091 SPTAN1Q13813 2472 aaKnown RBP8.38□□□□□ -1.07
LIG1-220ENST00000601091 MUC3AQ02505 3323 aa8.38□□□□□ -1.07
LIG1-220ENST00000601091 H3BRM9 83 aa8.38□□□□□ -1.07
LIG1-220ENST00000601091 P0C879 139 aa8.38□□□□□ -1.07
LIG1-220ENST00000601091 RPP21Q9H633 154 aaKnown RBP8.38□□□□□ -1.07
LIG1-220ENST00000601091 ZNRD1Q9P1U0 126 aa8.38□□□□□ -1.07
LIG1-220ENST00000601091 TMSB15BA0A087X1C1 80 aa8.38□□□□□ -1.07
LIG1-220ENST00000601091 KIAA1549Q9HCM3 1950 aa8.38□□□□□ -1.07
LIG1-220ENST00000601091 IGLV3-9A0A075B6K5 115 aa8.37□□□□□ -1.07
LIG1-220ENST00000601091 TMEM178BH3BS89 294 aa8.37□□□□□ -1.07
LIG1-220ENST00000601091 NUP37Q8NFH4 326 aa8.37□□□□□ -1.07
LIG1-220ENST00000601091 C11orf52Q96A22 123 aa8.37□□□□□ -1.07
LIG1-220ENST00000601091 SNRNP40Q96DI7 357 aaKnown RBP8.37□□□□□ -1.07
LIG1-220ENST00000601091 FMC1Q96HJ9 113 aa8.37□□□□□ -1.07
LIG1-220ENST00000601091 TMEM70Q9BUB7 260 aa8.37□□□□□ -1.07
LIG1-220ENST00000601091 LSM4Q9Y4Z0 139 aaKnown RBP8.37□□□□□ -1.07
LIG1-220ENST00000601091 EXPH5Q8NEV8 1989 aa8.37□□□□□ -1.07
LIG1-220ENST00000601091 PRR20EP86478 221 aa8.37□□□□□ -1.07
LIG1-220ENST00000601091 PRR20CP86479 221 aa8.37□□□□□ -1.07
LIG1-220ENST00000601091 PRR20DP86480 221 aa8.37□□□□□ -1.07
LIG1-220ENST00000601091 PRR20BP86481 221 aa8.37□□□□□ -1.07
LIG1-220ENST00000601091 PRR20AP86496 221 aa8.37□□□□□ -1.07
LIG1-220ENST00000601091 Q0VG73 95 aa8.37□□□□□ -1.07
LIG1-220ENST00000601091 PPP1R27Q86WC6 154 aa8.37□□□□□ -1.07
LIG1-220ENST00000601091 RPRMLQ8N4K4 120 aa8.37□□□□□ -1.07
LIG1-220ENST00000601091 Q8TCH9 128 aa8.37□□□□□ -1.07
LIG1-220ENST00000601091 TSKUQ8WUA8 353 aa8.37□□□□□ -1.07
LIG1-220ENST00000601091 Q9H3A6 140 aa8.37□□□□□ -1.07
LIG1-220ENST00000601091 RAXQ9Y2V3 346 aa8.37□□□□□ -1.07
LIG1-220ENST00000601091 F8W1H4 67 aa8.37□□□□□ -1.07
LIG1-220ENST00000601091 GPX1P07203 203 aa8.37□□□□□ -1.07
LIG1-220ENST00000601091 WIPF2Q8TF74 440 aaPredicted RBP8.37□□□□□ -1.07
LIG1-220ENST00000601091 CCL21O00585 134 aa8.37□□□□□ -1.07
LIG1-220ENST00000601091 VGLL1Q99990 258 aa8.37□□□□□ -1.07
LIG1-220ENST00000601091 H3BMG7 143 aa8.36□□□□□ -1.07
LIG1-220ENST00000601091 BRWD1-AS2P59051 145 aa8.36□□□□□ -1.07
LIG1-220ENST00000601091 HERVK_113P63121 156 aa8.36□□□□□ -1.07
LIG1-220ENST00000601091 DIAPH2-AS1Q14236 149 aa8.36□□□□□ -1.07
LIG1-220ENST00000601091 LINC00479Q96M42 142 aa8.36□□□□□ -1.07
LIG1-220ENST00000601091 OOSP1A8MZH6 123 aa8.36□□□□□ -1.07
LIG1-220ENST00000601091 IL4P05112 153 aa8.36□□□□□ -1.07
LIG1-220ENST00000601091 RPL15P61313 204 aaKnown RBP8.36□□□□□ -1.07
LIG1-220ENST00000601091 PMCHL2Q9BQD1 86 aa8.36□□□□□ -1.07
LIG1-220ENST00000601091 NDUFA4L2Q9NRX3 87 aa8.36□□□□□ -1.07
LIG1-220ENST00000601091 BEX4Q9NWD9 120 aaPredicted RBP8.36□□□□□ -1.07
LIG1-220ENST00000601091 V9GYV3 84 aa8.36□□□□□ -1.07
LIG1-220ENST00000601091 hDV102S1A0JD36 115 aa8.35□□□□□ -1.07
LIG1-220ENST00000601091 SRRM4A7MD48 611 aaKnown RBP8.35□□□□□ -1.07
LIG1-220ENST00000601091 RPL11P62913 178 aaKnown RBP8.35□□□□□ -1.07
LIG1-220ENST00000601091 TMEM136Q6ZRR5 245 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms