RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 PYYP10082 97 aa11.66□□□□□ -0.54
LSM4-206ENST00000600289 HIST1H1AQ02539 215 aaPredicted RBP11.66□□□□□ -0.54
LSM4-206ENST00000600289 C1orf158Q8N1D5 194 aa11.66□□□□□ -0.54
LSM4-206ENST00000600289 OR2T35Q8NGX2 323 aa11.66□□□□□ -0.54
LSM4-206ENST00000600289 TNFSF18Q9UNG2 199 aa11.66□□□□□ -0.54
LSM4-206ENST00000600289 PRELID1Q9Y255 219 aa11.66□□□□□ -0.54
LSM4-206ENST00000600289 TMEM189A5PLL7 270 aa11.65□□□□□ -0.54
LSM4-206ENST00000600289 RNF222A6NCQ9 220 aa11.65□□□□□ -0.54
LSM4-206ENST00000600289 CXorf65A6NEN9 183 aa11.65□□□□□ -0.54
LSM4-206ENST00000600289 DEFB4AO15263 64 aa11.65□□□□□ -0.54
LSM4-206ENST00000600289 INSP01308 110 aa11.65□□□□□ -0.54
LSM4-206ENST00000600289 RHOBP62745 196 aa11.65□□□□□ -0.54
LSM4-206ENST00000600289 CEMP1Q6PRD7 247 aaPredicted RBP11.65□□□□□ -0.54
LSM4-206ENST00000600289 INO80EQ8NBZ0 244 aaPredicted RBP11.65□□□□□ -0.54
LSM4-206ENST00000600289 OR2G3Q8NGZ4 309 aa11.65□□□□□ -0.54
LSM4-206ENST00000600289 PSMG3Q9BT73 122 aaPredicted RBP11.65□□□□□ -0.54
LSM4-206ENST00000600289 OR51M1Q9H341 326 aa11.65□□□□□ -0.54
LSM4-206ENST00000600289 KMT2AQ03164 3969 aa11.65□□□□□ -0.55
LSM4-206ENST00000600289 NPIPB6E9PJ23 425 aa11.64□□□□□ -0.55
LSM4-206ENST00000600289 PMS2P11Q13670 270 aa11.64□□□□□ -0.55
LSM4-206ENST00000600289 SPINK13Q1W4C9 94 aa11.64□□□□□ -0.55
LSM4-206ENST00000600289 KHDC3LQ587J8 217 aa11.64□□□□□ -0.55
LSM4-206ENST00000600289 OR10J6PQ8NGY7 276 aa11.64□□□□□ -0.55
LSM4-206ENST00000600289 FXYD5Q96DB9 178 aa11.64□□□□□ -0.55
LSM4-206ENST00000600289 ODF3Q96PU9 254 aa11.64□□□□□ -0.55
LSM4-206ENST00000600289 PAXXQ9BUH6 204 aa11.64□□□□□ -0.55
LSM4-206ENST00000600289 RFNGQ9Y644 331 aa11.64□□□□□ -0.55
LSM4-206ENST00000600289 PRAC2D3DTV9 90 aa11.63□□□□□ -0.55
LSM4-206ENST00000600289 M0R2Z0 102 aa11.63□□□□□ -0.55
LSM4-206ENST00000600289 NBEAP1P0C6P0 100 aa11.63□□□□□ -0.55
LSM4-206ENST00000600289 M6PRP20645 277 aa11.63□□□□□ -0.55
LSM4-206ENST00000600289 TAS2R45P59539 299 aa11.63□□□□□ -0.55
LSM4-206ENST00000600289 NANOS2P60321 138 aaKnown RBP11.63□□□□□ -0.55
LSM4-206ENST00000600289 ACOT6Q3I5F7 207 aaPredicted RBP11.63□□□□□ -0.55
LSM4-206ENST00000600289 PHLDA1Q8WV24 401 aaPredicted RBP11.63□□□□□ -0.55
LSM4-206ENST00000600289 ZNF503Q96F45 646 aa11.63□□□□□ -0.55
LSM4-206ENST00000600289 AAMDCQ9H7C9 122 aa11.63□□□□□ -0.55
LSM4-206ENST00000600289 FXYD6-FXYD2A0A087WZ82 144 aa11.62□□□□□ -0.55
LSM4-206ENST00000600289 CDKN1BP46527 198 aa11.62□□□□□ -0.55
LSM4-206ENST00000600289 LYPD1Q8N2G4 141 aa11.62□□□□□ -0.55
LSM4-206ENST00000600289 TMEM256Q8N2U0 113 aa11.62□□□□□ -0.55
LSM4-206ENST00000600289 RNF141Q8WVD5 230 aa11.62□□□□□ -0.55
LSM4-206ENST00000600289 C20orf144Q9BQM9 153 aa11.62□□□□□ -0.55
LSM4-206ENST00000600289 KLK5Q9Y337 293 aaPredicted RBP11.62□□□□□ -0.55
LSM4-206ENST00000600289 C11orf94C9JXX5 98 aa11.61□□□□□ -0.55
LSM4-206ENST00000600289 M0R3E3 92 aa11.61□□□□□ -0.55
LSM4-206ENST00000600289 OR7C2O60412 319 aa11.61□□□□□ -0.55
LSM4-206ENST00000600289 HBE1P02100 147 aa11.61□□□□□ -0.55
LSM4-206ENST00000600289 SERF2P84101 59 aa11.61□□□□□ -0.55
LSM4-206ENST00000600289 BLNKQ8WV28 456 aa11.61□□□□□ -0.55
LSM4-206ENST00000600289 PPP1R14DQ9NXH3 145 aa11.61□□□□□ -0.55
LSM4-206ENST00000600289 IGHV3OR16-12A0A075B7B8 117 aa11.6□□□□□ -0.55
LSM4-206ENST00000600289 TEX48A0A1B0GUV7 120 aa11.6□□□□□ -0.55
LSM4-206ENST00000600289 ATP6V0CP27449 155 aa11.6□□□□□ -0.55
LSM4-206ENST00000600289 TSPOP30536 169 aa11.6□□□□□ -0.55
LSM4-206ENST00000600289 UBE2L3P68036 154 aaKnown RBP11.6□□□□□ -0.55
LSM4-206ENST00000600289 RRN3P1Q2M238 152 aa11.6□□□□□ -0.55
LSM4-206ENST00000600289 PQLC2Q6ZP29 291 aa11.6□□□□□ -0.55
LSM4-206ENST00000600289 BAP18Q8IXM2 172 aa11.6□□□□□ -0.55
LSM4-206ENST00000600289 EXOC3-AS1Q8N2X6 119 aa11.6□□□□□ -0.55
LSM4-206ENST00000600289 HSD17B11Q8NBQ5 300 aa11.6□□□□□ -0.55
LSM4-206ENST00000600289 CELA1Q9UNI1 258 aa11.6□□□□□ -0.55
LSM4-206ENST00000600289 TRAV12-2A0A075B6T6 113 aa11.59□□□□□ -0.55
LSM4-206ENST00000600289 A0A1W2PPV4 95 aa11.59□□□□□ -0.55
LSM4-206ENST00000600289 TAAR5O14804 337 aa11.59□□□□□ -0.55
LSM4-206ENST00000600289 MBP02144 154 aa11.59□□□□□ -0.55
LSM4-206ENST00000600289 OR10J4P0C629 311 aa11.59□□□□□ -0.55
LSM4-206ENST00000600289 RAB2AP61019 212 aa11.59□□□□□ -0.55
LSM4-206ENST00000600289 ICAM4Q14773 271 aa11.59□□□□□ -0.55
LSM4-206ENST00000600289 OR10G4Q8NGN3 311 aa11.59□□□□□ -0.55
LSM4-206ENST00000600289 OR10G9Q8NGN4 311 aa11.59□□□□□ -0.55
LSM4-206ENST00000600289 OR10G7Q8NGN6 311 aa11.59□□□□□ -0.55
LSM4-206ENST00000600289 GNPNAT1Q96EK6 184 aaPredicted RBP11.59□□□□□ -0.55
LSM4-206ENST00000600289 PHYHIPLQ96FC7 376 aa11.59□□□□□ -0.55
LSM4-206ENST00000600289 TMEM208Q9BTX3 173 aa11.59□□□□□ -0.55
LSM4-206ENST00000600289 BORCS7-ASMTA0A0B4J1R7 106 aa11.58□□□□□ -0.56
LSM4-206ENST00000600289 LOC102723971A0A1B0GUV8 181 aa11.58□□□□□ -0.56
LSM4-206ENST00000600289 CT45A10P0DMU9 189 aa11.58□□□□□ -0.56
LSM4-206ENST00000600289 LEPP41159 167 aa11.58□□□□□ -0.56
LSM4-206ENST00000600289 TCTAP57738 103 aa11.58□□□□□ -0.56
LSM4-206ENST00000600289 C9orf47Q6ZRZ4 202 aa11.58□□□□□ -0.56
LSM4-206ENST00000600289 RPP25LQ8N5L8 163 aaKnown RBP11.58□□□□□ -0.56
LSM4-206ENST00000600289 FAM19A4Q96LR4 140 aa11.58□□□□□ -0.56
LSM4-206ENST00000600289 LINC00477Q96M19 166 aa11.58□□□□□ -0.56
LSM4-206ENST00000600289 TRAV10A0A0B4J240 114 aa11.57□□□□□ -0.56
LSM4-206ENST00000600289 SPART-AS1P0CW21 52 aa11.57□□□□□ -0.56
LSM4-206ENST00000600289 PRB4P10163 310 aaPredicted RBP11.57□□□□□ -0.56
LSM4-206ENST00000600289 TAS2R60P59551 318 aa11.57□□□□□ -0.56
LSM4-206ENST00000600289 ZNF345Q14585 488 aa11.57□□□□□ -0.56
LSM4-206ENST00000600289 C12orf74Q32Q52 190 aa11.57□□□□□ -0.56
LSM4-206ENST00000600289 GFI1BQ5VTD9 330 aa11.57□□□□□ -0.56
LSM4-206ENST00000600289 RPL7L1Q6DKI1 246 aaKnown RBP11.57□□□□□ -0.56
LSM4-206ENST00000600289 FAM122CQ6P4D5 195 aa11.57□□□□□ -0.56
LSM4-206ENST00000600289 Q6ZTC4 211 aa11.57□□□□□ -0.56
LSM4-206ENST00000600289 DKK2Q9UBU2 259 aa11.57□□□□□ -0.56
LSM4-206ENST00000600289 VPS13DQ5THJ4 4388 aa11.56□□□□□ -0.56
LSM4-206ENST00000600289 RBAKDNA6NC62 111 aa11.56□□□□□ -0.56
LSM4-206ENST00000600289 HMSDA8MTL9 139 aa11.56□□□□□ -0.56
LSM4-206ENST00000600289 H7BYZ3 331 aa11.56□□□□□ -0.56
LSM4-206ENST00000600289 ARPC5O15511 151 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms