RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 SPART-AS1P0CW21 52 aa16.41■□□□□ 0.22
UPF1-207ENST00000599848 DEFB112Q30KQ8 113 aa16.41■□□□□ 0.22
UPF1-207ENST00000599848 ZNF493Q6ZR52 646 aa16.41■□□□□ 0.22
UPF1-207ENST00000599848 MRAPQ8TCY5 172 aa16.41■□□□□ 0.22
UPF1-207ENST00000599848 C15orf62A8K5M9 175 aa16.4■□□□□ 0.22
UPF1-207ENST00000599848 TM2D2Q9BX73 214 aa16.4■□□□□ 0.22
UPF1-207ENST00000599848 SELENOKQ9Y6D0 94 aa16.4■□□□□ 0.22
UPF1-207ENST00000599848 IGHV1-24A0A0C4DH33 117 aa16.4■□□□□ 0.22
UPF1-207ENST00000599848 G3V318 75 aa16.4■□□□□ 0.22
UPF1-207ENST00000599848 PMVKQ15126 192 aa16.4■□□□□ 0.22
UPF1-207ENST00000599848 MDC1Q14676 2089 aaKnown RBP16.4■□□□□ 0.22
UPF1-207ENST00000599848 INAFM2P0DMQ5 153 aa16.4■□□□□ 0.22
UPF1-207ENST00000599848 TMEM14BQ9NUH8 114 aa16.4■□□□□ 0.22
UPF1-207ENST00000599848 NTF4P34130 210 aa16.39■□□□□ 0.21
UPF1-207ENST00000599848 C8orf86Q6ZUL3 223 aa16.39■□□□□ 0.21
UPF1-207ENST00000599848 RPP25LQ8N5L8 163 aaKnown RBP16.39■□□□□ 0.21
UPF1-207ENST00000599848 H3BUT2 72 aa16.39■□□□□ 0.21
UPF1-207ENST00000599848 Q6ZWC4 215 aa16.39■□□□□ 0.21
UPF1-207ENST00000599848 TMEM14CQ9P0S9 112 aa16.39■□□□□ 0.21
UPF1-207ENST00000599848 SDK2Q58EX2 2172 aa16.39■□□□□ 0.21
UPF1-207ENST00000599848 IGKV1-16P04430 117 aa16.38■□□□□ 0.21
UPF1-207ENST00000599848 C1orf43Q9BWL3 253 aa16.38■□□□□ 0.21
UPF1-207ENST00000599848 TRBV24-1A0A075B6N3 115 aa16.38■□□□□ 0.21
UPF1-207ENST00000599848 GP9P14770 177 aa16.38■□□□□ 0.21
UPF1-207ENST00000599848 PYGO2Q9BRQ0 406 aa16.38■□□□□ 0.21
UPF1-207ENST00000599848 MYCNOSP40205 109 aa16.38■□□□□ 0.21
UPF1-207ENST00000599848 LY6G6FQ5SQ64 297 aa16.38■□□□□ 0.21
UPF1-207ENST00000599848 IGFL2Q6UWQ7 119 aa16.38■□□□□ 0.21
UPF1-207ENST00000599848 ZNRF2Q8NHG8 242 aa16.38■□□□□ 0.21
UPF1-207ENST00000599848 IGF2BP2-AS1Q96M15 143 aa16.38■□□□□ 0.21
UPF1-207ENST00000599848 CFPP27918 469 aa16.38■□□□□ 0.21
UPF1-207ENST00000599848 CFHR3Q02985 330 aa16.37■□□□□ 0.21
UPF1-207ENST00000599848 MRPL23Q16540 153 aaKnown RBP16.37■□□□□ 0.21
UPF1-207ENST00000599848 Q8NFD4 153 aa16.37■□□□□ 0.21
UPF1-207ENST00000599848 LINC00518Q8N0U6 118 aa16.37■□□□□ 0.21
UPF1-207ENST00000599848 A8MXK9 166 aa16.36■□□□□ 0.21
UPF1-207ENST00000599848 MMP23AO75900 390 aa16.36■□□□□ 0.21
UPF1-207ENST00000599848 ANGP03950 147 aaKnown RBP16.36■□□□□ 0.21
UPF1-207ENST00000599848 INSL3P51460 131 aa16.36■□□□□ 0.21
UPF1-207ENST00000599848 HS3ST6Q96QI5 342 aa16.36■□□□□ 0.21
UPF1-207ENST00000599848 ICOSQ9Y6W8 199 aa16.36■□□□□ 0.21
UPF1-207ENST00000599848 H0YIZ8 118 aa16.36■□□□□ 0.21
UPF1-207ENST00000599848 PRSS46E5RG02 174 aa16.36■□□□□ 0.21
UPF1-207ENST00000599848 ATP5G1P05496 136 aa16.36■□□□□ 0.21
UPF1-207ENST00000599848 MRPL53Q96EL3 112 aaKnown RBP16.36■□□□□ 0.21
UPF1-207ENST00000599848 MYO7BQ6PIF6 2116 aa16.35■□□□□ 0.21
UPF1-207ENST00000599848 IGKV2D-24A0A075B6R9 120 aa16.35■□□□□ 0.21
UPF1-207ENST00000599848 SCN2AQ99250 2005 aa16.35■□□□□ 0.21
UPF1-207ENST00000599848 LTBP1Q14766 1721 aa16.35■□□□□ 0.21
UPF1-207ENST00000599848 WFDC1Q9HC57 220 aa16.35■□□□□ 0.21
UPF1-207ENST00000599848 TRBV19A0A075B6N1 114 aa16.35■□□□□ 0.21
UPF1-207ENST00000599848 IGHV2-70P01814 119 aa16.35■□□□□ 0.21
UPF1-207ENST00000599848 LINC01551Q86U37 167 aa16.35■□□□□ 0.21
UPF1-207ENST00000599848 ZNF134P52741 427 aa16.34■□□□□ 0.21
UPF1-207ENST00000599848 PIFOQ8TCI5 191 aa16.34■□□□□ 0.21
UPF1-207ENST00000599848 SMIM2Q9BVW6 85 aa16.34■□□□□ 0.21
UPF1-207ENST00000599848 KNCNA6PVL3 124 aa16.34■□□□□ 0.21
UPF1-207ENST00000599848 HERVK_113P63121 156 aa16.34■□□□□ 0.21
UPF1-207ENST00000599848 SCN8AQ9UQD0 1980 aa16.34■□□□□ 0.21
UPF1-207ENST00000599848 TAL2Q16559 108 aa16.34■□□□□ 0.21
UPF1-207ENST00000599848 LENEPQ9Y5L5 61 aa16.34■□□□□ 0.21
UPF1-207ENST00000599848 GAGE6Q13070 117 aa16.33■□□□□ 0.21
UPF1-207ENST00000599848 ZNF114Q8NC26 417 aa16.33■□□□□ 0.21
UPF1-207ENST00000599848 NUP35Q8NFH5 326 aa16.33■□□□□ 0.21
UPF1-207ENST00000599848 NCOR1O75376 2440 aa16.33■□□□□ 0.21
UPF1-207ENST00000599848 TMEM89A2RUT3 159 aa16.33■□□□□ 0.21
UPF1-207ENST00000599848 GAGE2EQ4V326 116 aa16.33■□□□□ 0.21
UPF1-207ENST00000599848 GAGE2DQ9UEU5 116 aa16.33■□□□□ 0.21
UPF1-207ENST00000599848 THSD7BQ9C0I4 1608 aa16.33■□□□□ 0.2
UPF1-207ENST00000599848 KLK9Q9UKQ9 250 aa16.33■□□□□ 0.2
UPF1-207ENST00000599848 SCN5AQ14524 2016 aa16.33■□□□□ 0.2
UPF1-207ENST00000599848 PRSS29PA6NIE9 313 aa16.33■□□□□ 0.2
UPF1-207ENST00000599848 H3BRN7 92 aa16.33■□□□□ 0.2
UPF1-207ENST00000599848 VSIRQ9H7M9 311 aa16.33■□□□□ 0.2
UPF1-207ENST00000599848 TRAV25A0A0B4J276 109 aa16.32■□□□□ 0.2
UPF1-207ENST00000599848 C16orf74Q96GX8 76 aa16.32■□□□□ 0.2
UPF1-207ENST00000599848 GFI1Q99684 422 aa16.32■□□□□ 0.2
UPF1-207ENST00000599848 IGFL4Q6B9Z1 124 aa16.32■□□□□ 0.2
UPF1-207ENST00000599848 C10orf105Q8TEF2 133 aa16.32■□□□□ 0.2
UPF1-207ENST00000599848 IGHV4-59P01825 116 aa16.32■□□□□ 0.2
UPF1-207ENST00000599848 PTPRFP10586 1907 aa16.32■□□□□ 0.2
UPF1-207ENST00000599848 HOXB4P17483 251 aaPredicted RBP16.32■□□□□ 0.2
UPF1-207ENST00000599848 C2orf82Q6UX34 121 aa16.32■□□□□ 0.2
UPF1-207ENST00000599848 Q6ZR03 302 aa16.32■□□□□ 0.2
UPF1-207ENST00000599848 DIDO1Q9BTC0 2240 aaKnown RBP16.31■□□□□ 0.2
UPF1-207ENST00000599848 SHISA9B4DS77 424 aa16.31■□□□□ 0.2
UPF1-207ENST00000599848 QRFPP83859 136 aa16.31■□□□□ 0.2
UPF1-207ENST00000599848 C17orf58Q2M2W7 97 aa16.31■□□□□ 0.2
UPF1-207ENST00000599848 LRRC75A-AS1Q8N1F1 130 aa16.31■□□□□ 0.2
UPF1-207ENST00000599848 CLPSL1A2RUU4 121 aa16.31■□□□□ 0.2
UPF1-207ENST00000599848 Q8N8P6 123 aa16.3■□□□□ 0.2
UPF1-207ENST00000599848 UBE2WQ96B02 151 aa16.3■□□□□ 0.2
UPF1-207ENST00000599848 TP53TG1Q9Y2A0 90 aa16.3■□□□□ 0.2
UPF1-207ENST00000599848 OR11H6Q8NGC7 330 aa16.3■□□□□ 0.2
UPF1-207ENST00000599848 LCTP09848 1927 aa16.3■□□□□ 0.2
UPF1-207ENST00000599848 IGKV1OR2-108A0A075B7D4 117 aa16.3■□□□□ 0.2
UPF1-207ENST00000599848 SOCS3O14543 225 aa16.3■□□□□ 0.2
UPF1-207ENST00000599848 FAM120AOSQ5T036 256 aa16.3■□□□□ 0.2
UPF1-207ENST00000599848 SMAD5-AS1Q9Y6J3 95 aa16.29■□□□□ 0.2
UPF1-207ENST00000599848 SDHAF1A6NFY7 115 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms