RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 SAT2Q96F10 170 aaPredicted RBP12.71□□□□□ -0.37
SHKBP1-204ENST00000594862 FAM210BQ96KR6 192 aa12.71□□□□□ -0.37
SHKBP1-204ENST00000594862 NIPSNAP3BQ9BS92 247 aa12.71□□□□□ -0.37
SHKBP1-204ENST00000594862 PRELID1Q9Y255 219 aa12.71□□□□□ -0.37
SHKBP1-204ENST00000594862 IGHV4-4A0A075B6R2 117 aa12.7□□□□□ -0.38
SHKBP1-204ENST00000594862 TRAV5A0A0B4J249 113 aa12.7□□□□□ -0.38
SHKBP1-204ENST00000594862 FAM222AQ5U5X8 452 aa12.7□□□□□ -0.38
SHKBP1-204ENST00000594862 BAP18Q8IXM2 172 aa12.7□□□□□ -0.38
SHKBP1-204ENST00000594862 ODF3Q96PU9 254 aa12.7□□□□□ -0.38
SHKBP1-204ENST00000594862 APLNQ9ULZ1 77 aa12.7□□□□□ -0.38
SHKBP1-204ENST00000594862 HSPB11Q9Y547 144 aa12.7□□□□□ -0.38
SHKBP1-204ENST00000594862 YTHDF2Q9Y5A9 579 aaKnown RBP12.7□□□□□ -0.38
SHKBP1-204ENST00000594862 TRBV19A0A075B6N1 114 aa12.69□□□□□ -0.38
SHKBP1-204ENST00000594862 IFNA5P01569 189 aa12.69□□□□□ -0.38
SHKBP1-204ENST00000594862 RPL12P30050 165 aaKnown RBP12.69□□□□□ -0.38
SHKBP1-204ENST00000594862 PLECQ15149 4684 aaKnown RBP12.69□□□□□ -0.38
SHKBP1-204ENST00000594862 AAMDCQ9H7C9 122 aa12.69□□□□□ -0.38
SHKBP1-204ENST00000594862 ZNF586Q9NXT0 402 aa12.69□□□□□ -0.38
SHKBP1-204ENST00000594862 TIMM9Q9Y5J7 89 aa12.69□□□□□ -0.38
SHKBP1-204ENST00000594862 LYRM9A8MSI8 78 aa12.68□□□□□ -0.38
SHKBP1-204ENST00000594862 H3BTX0 84 aa12.68□□□□□ -0.38
SHKBP1-204ENST00000594862 SNRPCP09234 159 aaKnown RBP12.68□□□□□ -0.38
SHKBP1-204ENST00000594862 TAS2R60P59551 318 aa12.68□□□□□ -0.38
SHKBP1-204ENST00000594862 ZNF767PQ75MW2 155 aa12.68□□□□□ -0.38
SHKBP1-204ENST00000594862 SCGB1C1Q8TD33 95 aa12.68□□□□□ -0.38
SHKBP1-204ENST00000594862 NDUFAF3Q9BU61 184 aa12.68□□□□□ -0.38
SHKBP1-204ENST00000594862 MBD2Q9UBB5 411 aa12.68□□□□□ -0.38
SHKBP1-204ENST00000594862 ALG5Q9Y673 324 aa12.68□□□□□ -0.38
SHKBP1-204ENST00000594862 TRAV12-2A0A075B6T6 113 aa12.67□□□□□ -0.38
SHKBP1-204ENST00000594862 NPIPB6E9PJ23 425 aa12.67□□□□□ -0.38
SHKBP1-204ENST00000594862 LEPP41159 167 aa12.67□□□□□ -0.38
SHKBP1-204ENST00000594862 ZNF493Q6ZR52 646 aa12.67□□□□□ -0.38
SHKBP1-204ENST00000594862 RPP25LQ8N5L8 163 aaKnown RBP12.67□□□□□ -0.38
SHKBP1-204ENST00000594862 ASB13Q8WXK3 278 aa12.67□□□□□ -0.38
SHKBP1-204ENST00000594862 LINC01587Q99440 93 aa12.67□□□□□ -0.38
SHKBP1-204ENST00000594862 PARD6GQ9BYG4 376 aaPredicted RBP12.67□□□□□ -0.38
SHKBP1-204ENST00000594862 H7BYZ3 331 aa12.66□□□□□ -0.38
SHKBP1-204ENST00000594862 DAD1P61803 113 aa12.66□□□□□ -0.38
SHKBP1-204ENST00000594862 C16orf74Q96GX8 76 aa12.66□□□□□ -0.38
SHKBP1-204ENST00000594862 SLC25A2Q9BXI2 301 aa12.66□□□□□ -0.38
SHKBP1-204ENST00000594862 FUT9Q9Y231 359 aa12.66□□□□□ -0.38
SHKBP1-204ENST00000594862 GCSAMLQ5JQS6 135 aa12.65□□□□□ -0.38
SHKBP1-204ENST00000594862 MED28Q9H204 178 aa12.65□□□□□ -0.38
SHKBP1-204ENST00000594862 OR51M1Q9H341 326 aa12.65□□□□□ -0.38
SHKBP1-204ENST00000594862 FRAS1Q86XX4 4008 aa12.65□□□□□ -0.39
SHKBP1-204ENST00000594862 ZNF705GA8MUZ8 300 aaPredicted RBP12.64□□□□□ -0.39
SHKBP1-204ENST00000594862 P0DMU3 169 aa12.64□□□□□ -0.39
SHKBP1-204ENST00000594862 FAM231AP0DMU4 169 aa12.64□□□□□ -0.39
SHKBP1-204ENST00000594862 FAM231CP0DMU5 169 aa12.64□□□□□ -0.39
SHKBP1-204ENST00000594862 PYYP10082 97 aa12.64□□□□□ -0.39
SHKBP1-204ENST00000594862 TAS2R45P59539 299 aa12.64□□□□□ -0.39
SHKBP1-204ENST00000594862 MIR17HGQ75NE6 70 aa12.64□□□□□ -0.39
SHKBP1-204ENST00000594862 TMEM263Q8WUH6 116 aaKnown RBP12.64□□□□□ -0.39
SHKBP1-204ENST00000594862 BLNKQ8WV28 456 aa12.64□□□□□ -0.39
SHKBP1-204ENST00000594862 FAM167A-AS1Q96KT0 104 aa12.64□□□□□ -0.39
SHKBP1-204ENST00000594862 PRAC2D3DTV9 90 aa12.63□□□□□ -0.39
SHKBP1-204ENST00000594862 NDUFB4O95168 129 aa12.63□□□□□ -0.39
SHKBP1-204ENST00000594862 NBEAP1P0C6P0 100 aa12.63□□□□□ -0.39
SHKBP1-204ENST00000594862 KHDC3LQ587J8 217 aa12.63□□□□□ -0.39
SHKBP1-204ENST00000594862 FFAR4Q5NUL3 377 aa12.63□□□□□ -0.39
SHKBP1-204ENST00000594862 CCDC28AQ8IWP9 274 aa12.63□□□□□ -0.39
SHKBP1-204ENST00000594862 LINC00477Q96M19 166 aa12.63□□□□□ -0.39
SHKBP1-204ENST00000594862 PAXXQ9BUH6 204 aa12.63□□□□□ -0.39
SHKBP1-204ENST00000594862 OR7C2O60412 319 aa12.62□□□□□ -0.39
SHKBP1-204ENST00000594862 ZNF266Q14584 549 aa12.62□□□□□ -0.39
SHKBP1-204ENST00000594862 GFI1BQ5VTD9 330 aa12.62□□□□□ -0.39
SHKBP1-204ENST00000594862 LYPD1Q8N2G4 141 aa12.62□□□□□ -0.39
SHKBP1-204ENST00000594862 SMIM3Q9BZL3 60 aa12.62□□□□□ -0.39
SHKBP1-204ENST00000594862 M0R3E3 92 aa12.61□□□□□ -0.39
SHKBP1-204ENST00000594862 SLC25A5P05141 298 aaKnown RBP12.61□□□□□ -0.39
SHKBP1-204ENST00000594862 RNF141Q8WVD5 230 aa12.61□□□□□ -0.39
SHKBP1-204ENST00000594862 FXYD5Q96DB9 178 aa12.61□□□□□ -0.39
SHKBP1-204ENST00000594862 PYGO2Q9BRQ0 406 aa12.61□□□□□ -0.39
SHKBP1-204ENST00000594862 KRTAP17-1Q9BYP8 105 aa12.61□□□□□ -0.39
SHKBP1-204ENST00000594862 TIMM8BQ9Y5J9 83 aaPredicted RBP12.61□□□□□ -0.39
SHKBP1-204ENST00000594862 NMBP08949 121 aa12.6□□□□□ -0.39
SHKBP1-204ENST00000594862 CT45A10P0DMU9 189 aa12.6□□□□□ -0.39
SHKBP1-204ENST00000594862 HTN3P15516 51 aa12.6□□□□□ -0.39
SHKBP1-204ENST00000594862 UBE2L3P68036 154 aaKnown RBP12.6□□□□□ -0.39
SHKBP1-204ENST00000594862 ICAM4Q14773 271 aa12.6□□□□□ -0.39
SHKBP1-204ENST00000594862 ACOT6Q3I5F7 207 aaPredicted RBP12.6□□□□□ -0.39
SHKBP1-204ENST00000594862 TMEM78Q5T7P6 136 aa12.6□□□□□ -0.39
SHKBP1-204ENST00000594862 C9orf47Q6ZRZ4 202 aa12.6□□□□□ -0.39
SHKBP1-204ENST00000594862 RNASE8Q8TDE3 154 aaKnown RBP12.6□□□□□ -0.39
SHKBP1-204ENST00000594862 PLAC8L1A1L4L8 177 aa12.59□□□□□ -0.39
SHKBP1-204ENST00000594862 GIPP09681 153 aaPredicted RBP12.59□□□□□ -0.39
SHKBP1-204ENST00000594862 HTN1P15515 57 aa12.59□□□□□ -0.39
SHKBP1-204ENST00000594862 CSN1S1P47710 185 aa12.59□□□□□ -0.39
SHKBP1-204ENST00000594862 FCN2Q15485 313 aa12.59□□□□□ -0.39
SHKBP1-204ENST00000594862 EXOC3-AS1Q8N2X6 119 aa12.59□□□□□ -0.39
SHKBP1-204ENST00000594862 C15orf53Q8NAA6 179 aa12.59□□□□□ -0.39
SHKBP1-204ENST00000594862 AQP10Q96PS8 301 aa12.59□□□□□ -0.39
SHKBP1-204ENST00000594862 KMT2AQ03164 3969 aa12.58□□□□□ -0.4
SHKBP1-204ENST00000594862 TRBV7-9A0A0J9YWB2 115 aa12.58□□□□□ -0.4
SHKBP1-204ENST00000594862 C7orf71A4D174 169 aa12.58□□□□□ -0.4
SHKBP1-204ENST00000594862 OR10J4P0C629 311 aa12.58□□□□□ -0.4
SHKBP1-204ENST00000594862 PRB4P10163 310 aaPredicted RBP12.58□□□□□ -0.4
SHKBP1-204ENST00000594862 AZU1P20160 251 aa12.58□□□□□ -0.4
SHKBP1-204ENST00000594862 M6PRP20645 277 aa12.58□□□□□ -0.4
SHKBP1-204ENST00000594862 RGS21Q2M5E4 152 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms