RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 CDC34P49427 236 aaPredicted RBP18.75■□□□□ 0.59
TRIM28-204ENST00000594806 UBE2L3P68036 154 aaKnown RBP18.75■□□□□ 0.59
TRIM28-204ENST00000594806 OR10J6PQ8NGY7 276 aa18.75■□□□□ 0.59
TRIM28-204ENST00000594806 MUC7Q8TAX7 377 aa18.75■□□□□ 0.59
TRIM28-204ENST00000594806 ZNF503Q96F45 646 aa18.75■□□□□ 0.59
TRIM28-204ENST00000594806 SH3BGRL3Q9H299 93 aa18.75■□□□□ 0.59
TRIM28-204ENST00000594806 ZNF705FA8MVS1 300 aaPredicted RBP18.74■□□□□ 0.59
TRIM28-204ENST00000594806 C3orf84H3BNL1 204 aa18.74■□□□□ 0.59
TRIM28-204ENST00000594806 RPP25LQ8N5L8 163 aaKnown RBP18.74■□□□□ 0.59
TRIM28-204ENST00000594806 SLC35B3Q9H1N7 401 aa18.74■□□□□ 0.59
TRIM28-204ENST00000594806 PPP1R14DQ9NXH3 145 aa18.74■□□□□ 0.59
TRIM28-204ENST00000594806 KANTRA0A1W2PQU2 76 aa18.73■□□□□ 0.59
TRIM28-204ENST00000594806 ZNF705DP0CH99 300 aaPredicted RBP18.73■□□□□ 0.59
TRIM28-204ENST00000594806 ZNF705BP0CI00 300 aaPredicted RBP18.73■□□□□ 0.59
TRIM28-204ENST00000594806 MIFP14174 115 aa18.73■□□□□ 0.59
TRIM28-204ENST00000594806 ACTR3CQ9C0K3 210 aaPredicted RBP18.73■□□□□ 0.59
TRIM28-204ENST00000594806 STAG3L2P0CL84 134 aa18.72■□□□□ 0.59
TRIM28-204ENST00000594806 STAG3L3P0CL85 134 aa18.72■□□□□ 0.59
TRIM28-204ENST00000594806 EIF5AP63241 154 aaKnown RBP18.72■□□□□ 0.59
TRIM28-204ENST00000594806 RAB24Q969Q5 203 aa18.72■□□□□ 0.59
TRIM28-204ENST00000594806 C11orf68Q9H3H3 251 aaKnown RBP18.72■□□□□ 0.59
TRIM28-204ENST00000594806 A0A0J9YWU9 116 aa18.71■□□□□ 0.59
TRIM28-204ENST00000594806 BOLA2-SMG1P6H3BVE0 249 aa18.71■□□□□ 0.59
TRIM28-204ENST00000594806 FXYD7P58549 80 aa18.71■□□□□ 0.59
TRIM28-204ENST00000594806 ICAM4Q14773 271 aa18.71■□□□□ 0.59
TRIM28-204ENST00000594806 ZNF705AQ6ZN79 300 aaPredicted RBP18.71■□□□□ 0.59
TRIM28-204ENST00000594806 AKAP14Q86UN6 197 aa18.71■□□□□ 0.59
TRIM28-204ENST00000594806 NEU1Q99519 415 aa18.71■□□□□ 0.59
TRIM28-204ENST00000594806 BCL2L11O43521 198 aa18.7■□□□□ 0.58
TRIM28-204ENST00000594806 AKR1C8PQ5T2L2 129 aa18.7■□□□□ 0.58
TRIM28-204ENST00000594806 EXOC3-AS1Q8N2X6 119 aa18.7■□□□□ 0.58
TRIM28-204ENST00000594806 IGF2BP2-AS1Q96M15 143 aa18.7■□□□□ 0.58
TRIM28-204ENST00000594806 GOLT1BQ9Y3E0 138 aa18.7■□□□□ 0.58
TRIM28-204ENST00000594806 SMIM9A6NGZ8 99 aa18.69■□□□□ 0.58
TRIM28-204ENST00000594806 PRAC2D3DTV9 90 aa18.69■□□□□ 0.58
TRIM28-204ENST00000594806 M0R3E3 92 aa18.69■□□□□ 0.58
TRIM28-204ENST00000594806 C1QBP02746 253 aa18.69■□□□□ 0.58
TRIM28-204ENST00000594806 PHYHIPLQ96FC7 376 aa18.69■□□□□ 0.58
TRIM28-204ENST00000594806 ODF3Q96PU9 254 aa18.69■□□□□ 0.58
TRIM28-204ENST00000594806 X6R8D5 127 aa18.69■□□□□ 0.58
TRIM28-204ENST00000594806 hCG_2014768A0A024R1R8 64 aa18.68■□□□□ 0.58
TRIM28-204ENST00000594806 NPIPB6E9PJ23 425 aa18.68■□□□□ 0.58
TRIM28-204ENST00000594806 TSPOP30536 169 aa18.68■□□□□ 0.58
TRIM28-204ENST00000594806 CSN1S1P47710 185 aa18.68■□□□□ 0.58
TRIM28-204ENST00000594806 RANP62826 216 aaKnown RBP18.68■□□□□ 0.58
TRIM28-204ENST00000594806 SPINK13Q1W4C9 94 aa18.68■□□□□ 0.58
TRIM28-204ENST00000594806 FAM74A1Q5RGS3 127 aa18.68■□□□□ 0.58
TRIM28-204ENST00000594806 TMUB2Q71RG4 321 aa18.68■□□□□ 0.58
TRIM28-204ENST00000594806 HYLS1Q96M11 299 aa18.68■□□□□ 0.58
TRIM28-204ENST00000594806 PFDN1O60925 122 aa18.67■□□□□ 0.58
TRIM28-204ENST00000594806 CXorf1O96002 111 aa18.67■□□□□ 0.58
TRIM28-204ENST00000594806 ARL14EPLP0DKL9 152 aa18.67■□□□□ 0.58
TRIM28-204ENST00000594806 Q8NAQ8 132 aa18.67■□□□□ 0.58
TRIM28-204ENST00000594806 LINC00477Q96M19 166 aa18.67■□□□□ 0.58
TRIM28-204ENST00000594806 ZNF471Q9BX82 626 aaPredicted RBP18.67■□□□□ 0.58
TRIM28-204ENST00000594806 Q9H3A6 140 aa18.67■□□□□ 0.58
TRIM28-204ENST00000594806 CTXND1A0A1B0GTU2 59 aa18.66■□□□□ 0.58
TRIM28-204ENST00000594806 M0R2Z0 102 aa18.66■□□□□ 0.58
TRIM28-204ENST00000594806 INSP01308 110 aa18.66■□□□□ 0.58
TRIM28-204ENST00000594806 SEC11BP0C7V7 166 aa18.66■□□□□ 0.58
TRIM28-204ENST00000594806 CDKN1BP46527 198 aa18.66■□□□□ 0.58
TRIM28-204ENST00000594806 ARL6IP6Q8N6S5 226 aa18.66■□□□□ 0.58
TRIM28-204ENST00000594806 RXFP4Q8TDU9 374 aa18.66■□□□□ 0.58
TRIM28-204ENST00000594806 OTORQ9NRC9 128 aa18.66■□□□□ 0.58
TRIM28-204ENST00000594806 TMEM167BQ9NRX6 74 aa18.66■□□□□ 0.58
TRIM28-204ENST00000594806 HMGB3O15347 200 aaKnown RBP18.65■□□□□ 0.58
TRIM28-204ENST00000594806 CRXO43186 299 aaPredicted RBP18.65■□□□□ 0.58
TRIM28-204ENST00000594806 SUN5Q8TC36 379 aa18.65■□□□□ 0.58
TRIM28-204ENST00000594806 EIF3GO75821 320 aaKnown RBP eCLIP18.64■□□□□ 0.573e-6■■□□□ 12.5
TRIM28-204ENST00000594806 GCHFRP30047 84 aa18.64■□□□□ 0.57
TRIM28-204ENST00000594806 C9orf47Q6ZRZ4 202 aa18.64■□□□□ 0.57
TRIM28-204ENST00000594806 C20orf144Q9BQM9 153 aa18.64■□□□□ 0.57
TRIM28-204ENST00000594806 IGHV4-28A0A0C4DH34 117 aa18.63■□□□□ 0.57
TRIM28-204ENST00000594806 RBAKDNA6NC62 111 aa18.63■□□□□ 0.57
TRIM28-204ENST00000594806 UMAD1C9J7I0 102 aa18.63■□□□□ 0.57
TRIM28-204ENST00000594806 SLC25A5P05141 298 aaKnown RBP18.63■□□□□ 0.57
TRIM28-204ENST00000594806 LEPP41159 167 aa18.63■□□□□ 0.57
TRIM28-204ENST00000594806 BAP18Q8IXM2 172 aa18.63■□□□□ 0.57
TRIM28-204ENST00000594806 C1orf158Q8N1D5 194 aa18.63■□□□□ 0.57
TRIM28-204ENST00000594806 TMEM256Q8N2U0 113 aa18.63■□□□□ 0.57
TRIM28-204ENST00000594806 TMEM208Q9BTX3 173 aa18.63■□□□□ 0.57
TRIM28-204ENST00000594806 CT45A10P0DMU9 189 aa18.62■□□□□ 0.57
TRIM28-204ENST00000594806 TPT1P13693 172 aaKnown RBP18.62■□□□□ 0.57
TRIM28-204ENST00000594806 LGALSLQ3ZCW2 172 aaPredicted RBP18.62■□□□□ 0.57
TRIM28-204ENST00000594806 STOML3Q8TAV4 291 aa18.62■□□□□ 0.57
TRIM28-204ENST00000594806 IGHV3OR16-12A0A075B7B8 117 aa18.61■□□□□ 0.57
TRIM28-204ENST00000594806 TMEM189A5PLL7 270 aa18.61■□□□□ 0.57
TRIM28-204ENST00000594806 PGPA6NDG6 321 aa18.61■□□□□ 0.57
TRIM28-204ENST00000594806 HBE1P02100 147 aa18.61■□□□□ 0.57
TRIM28-204ENST00000594806 PRB4P10163 310 aaPredicted RBP18.61■□□□□ 0.57
TRIM28-204ENST00000594806 CMTM2Q8TAZ6 248 aa18.61■□□□□ 0.57
TRIM28-204ENST00000594806 AGPAT4-IT1Q9H0P7 198 aa18.61■□□□□ 0.57
TRIM28-204ENST00000594806 RBMY1A1P0DJD3 496 aaKnown RBP18.6■□□□□ 0.57
TRIM28-204ENST00000594806 RBMY1CP0DJD4 496 aa18.6■□□□□ 0.57
TRIM28-204ENST00000594806 RBMY1FQ15415 496 aaKnown RBP18.6■□□□□ 0.57
TRIM28-204ENST00000594806 ZNF726P1Q15940 193 aa18.6■□□□□ 0.57
TRIM28-204ENST00000594806 CASC10Q5T4H9 136 aa18.6■□□□□ 0.57
TRIM28-204ENST00000594806 TMEM78Q5T7P6 136 aa18.6■□□□□ 0.57
TRIM28-204ENST00000594806 DNAH7Q8WXX0 4024 aa18.6■□□□□ 0.57
TRIM28-204ENST00000594806 TRAV12-2A0A075B6T6 113 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms