RNA–Protein interactions for RNA: ENST00000592690.1

LIG3-215, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 722 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-215ENST00000592690 ZNF767PQ75MW2 155 aa11.28□□□□□ -0.6
LIG3-215ENST00000592690 BLNKQ8WV28 456 aa11.28□□□□□ -0.6
LIG3-215ENST00000592690 FUT9Q9Y231 359 aa11.28□□□□□ -0.6
LIG3-215ENST00000592690 KLK5Q9Y337 293 aaPredicted RBP11.28□□□□□ -0.6
LIG3-215ENST00000592690 M0R3E3 92 aa11.27□□□□□ -0.61
LIG3-215ENST00000592690 EMP1P54849 157 aa11.27□□□□□ -0.61
LIG3-215ENST00000592690 Q6ZTC4 211 aa11.27□□□□□ -0.61
LIG3-215ENST00000592690 TMEM208Q9BTX3 173 aa11.27□□□□□ -0.61
LIG3-215ENST00000592690 PARD6GQ9BYG4 376 aaPredicted RBP11.27□□□□□ -0.61
LIG3-215ENST00000592690 PPP1R14DQ9NXH3 145 aa11.27□□□□□ -0.61
LIG3-215ENST00000592690 HBE1P02100 147 aa11.26□□□□□ -0.61
LIG3-215ENST00000592690 PRM2P04554 102 aa11.26□□□□□ -0.61
LIG3-215ENST00000592690 OR10J4P0C629 311 aa11.26□□□□□ -0.61
LIG3-215ENST00000592690 PDE6HQ13956 83 aa11.26□□□□□ -0.61
LIG3-215ENST00000592690 EXOC3-AS1Q8N2X6 119 aa11.26□□□□□ -0.61
LIG3-215ENST00000592690 LINC00476Q8WZB0 136 aa11.26□□□□□ -0.61
LIG3-215ENST00000592690 FXYD5Q96DB9 178 aa11.26□□□□□ -0.61
LIG3-215ENST00000592690 AQP10Q96PS8 301 aa11.26□□□□□ -0.61
LIG3-215ENST00000592690 OR51M1Q9H341 326 aa11.26□□□□□ -0.61
LIG3-215ENST00000592690 TIMM9Q9Y5J7 89 aa11.26□□□□□ -0.61
LIG3-215ENST00000592690 LOC102723971A0A1B0GUV8 181 aa11.25□□□□□ -0.61
LIG3-215ENST00000592690 EIF3GO75821 320 aaKnown RBP eCLIP11.25□□□□□ -0.61
LIG3-215ENST00000592690 KIR3DS1Q14943 382 aa11.25□□□□□ -0.61
LIG3-215ENST00000592690 RRN3P1Q2M238 152 aa11.25□□□□□ -0.61
LIG3-215ENST00000592690 C12orf74Q32Q52 190 aa11.25□□□□□ -0.61
LIG3-215ENST00000592690 OR10J6PQ8NGY7 276 aa11.25□□□□□ -0.61
LIG3-215ENST00000592690 ASB13Q8WXK3 278 aa11.25□□□□□ -0.61
LIG3-215ENST00000592690 ZNF503Q96F45 646 aa11.25□□□□□ -0.61
LIG3-215ENST00000592690 PAXXQ9BUH6 204 aa11.25□□□□□ -0.61
LIG3-215ENST00000592690 EPPK1P58107 5090 aaKnown RBP11.25□□□□□ -0.61
LIG3-215ENST00000592690 TMEM189A5PLL7 270 aa11.24□□□□□ -0.61
LIG3-215ENST00000592690 ZNF705GA8MUZ8 300 aaPredicted RBP11.24□□□□□ -0.61
LIG3-215ENST00000592690 C11orf94C9JXX5 98 aa11.24□□□□□ -0.61
LIG3-215ENST00000592690 NPIPB6E9PJ23 425 aa11.24□□□□□ -0.61
LIG3-215ENST00000592690 OR7C2O60412 319 aa11.24□□□□□ -0.61
LIG3-215ENST00000592690 NBEAP1P0C6P0 100 aa11.24□□□□□ -0.61
LIG3-215ENST00000592690 CDKN1BP46527 198 aa11.24□□□□□ -0.61
LIG3-215ENST00000592690 ICAM4Q14773 271 aa11.24□□□□□ -0.61
LIG3-215ENST00000592690 RPP25LQ8N5L8 163 aaKnown RBP11.24□□□□□ -0.61
LIG3-215ENST00000592690 C2CD4CQ8TF44 421 aa11.24□□□□□ -0.61
LIG3-215ENST00000592690 MRPL53Q96EL3 112 aaKnown RBP11.24□□□□□ -0.61
LIG3-215ENST00000592690 PHYHIPLQ96FC7 376 aa11.24□□□□□ -0.61
LIG3-215ENST00000592690 RNF222A6NCQ9 220 aa11.23□□□□□ -0.61
LIG3-215ENST00000592690 G3V3Q6 166 aa11.23□□□□□ -0.61
LIG3-215ENST00000592690 CT45A10P0DMU9 189 aa11.23□□□□□ -0.61
LIG3-215ENST00000592690 RAB2AP61019 212 aa11.23□□□□□ -0.61
LIG3-215ENST00000592690 FAM222AQ5U5X8 452 aa11.23□□□□□ -0.61
LIG3-215ENST00000592690 HSD17B11Q8NBQ5 300 aa11.23□□□□□ -0.61
LIG3-215ENST00000592690 OR2T35Q8NGX2 323 aa11.23□□□□□ -0.61
LIG3-215ENST00000592690 RNF141Q8WVD5 230 aa11.23□□□□□ -0.61
LIG3-215ENST00000592690 DKK2Q9UBU2 259 aa11.23□□□□□ -0.61
LIG3-215ENST00000592690 PRELID1Q9Y255 219 aa11.23□□□□□ -0.61
LIG3-215ENST00000592690 YTHDF2Q9Y5A9 579 aaKnown RBP11.23□□□□□ -0.61
LIG3-215ENST00000592690 FXYD6-FXYD2A0A087WZ82 144 aa11.22□□□□□ -0.61
LIG3-215ENST00000592690 TRAV10A0A0B4J240 114 aa11.22□□□□□ -0.61
LIG3-215ENST00000592690 SPART-AS1P0CW21 52 aa11.22□□□□□ -0.61
LIG3-215ENST00000592690 UBE2L3P68036 154 aaKnown RBP11.22□□□□□ -0.61
LIG3-215ENST00000592690 ERCC8Q13216 396 aa11.22□□□□□ -0.61
LIG3-215ENST00000592690 ZNF266Q14584 549 aa11.22□□□□□ -0.61
LIG3-215ENST00000592690 KHDC3LQ587J8 217 aa11.22□□□□□ -0.61
LIG3-215ENST00000592690 GFI1BQ5VTD9 330 aa11.22□□□□□ -0.61
LIG3-215ENST00000592690 AAMDCQ9H7C9 122 aa11.22□□□□□ -0.61
LIG3-215ENST00000592690 PLA2G2EQ9NZK7 142 aa11.22□□□□□ -0.61
LIG3-215ENST00000592690 IGLL5B9A064 214 aa11.21□□□□□ -0.61
LIG3-215ENST00000592690 J3KRW8 73 aa11.21□□□□□ -0.61
LIG3-215ENST00000592690 LY6G6CO95867 125 aa11.21□□□□□ -0.61
LIG3-215ENST00000592690 AZU1P20160 251 aa11.21□□□□□ -0.61
LIG3-215ENST00000592690 M6PRP20645 277 aa11.21□□□□□ -0.61
LIG3-215ENST00000592690 ACOT6Q3I5F7 207 aaPredicted RBP11.21□□□□□ -0.61
LIG3-215ENST00000592690 FAM122CQ6P4D5 195 aa11.21□□□□□ -0.61
LIG3-215ENST00000592690 TMEM256Q8N2U0 113 aa11.21□□□□□ -0.61
LIG3-215ENST00000592690 ODF3Q96PU9 254 aa11.21□□□□□ -0.61
LIG3-215ENST00000592690 LINC01587Q99440 93 aa11.21□□□□□ -0.61
LIG3-215ENST00000592690 TNFSF18Q9UNG2 199 aa11.21□□□□□ -0.61
LIG3-215ENST00000592690 IGKV2-40A0A087WW87 121 aaPredicted RBP11.2□□□□□ -0.62
LIG3-215ENST00000592690 DEFB131BA0A096LNP1 70 aa11.2□□□□□ -0.62
LIG3-215ENST00000592690 IGKV2D-40P01614 121 aaPredicted RBP11.2□□□□□ -0.62
LIG3-215ENST00000592690 ATP6V0CP27449 155 aa11.2□□□□□ -0.62
LIG3-215ENST00000592690 TSPOP30536 169 aa11.2□□□□□ -0.62
LIG3-215ENST00000592690 TAS2R45P59539 299 aa11.2□□□□□ -0.62
LIG3-215ENST00000592690 INO80EQ8NBZ0 244 aaPredicted RBP11.2□□□□□ -0.62
LIG3-215ENST00000592690 PLAC8L1A1L4L8 177 aa11.19□□□□□ -0.62
LIG3-215ENST00000592690 SMLR1H3BR10 107 aa11.19□□□□□ -0.62
LIG3-215ENST00000592690 HTN1P15515 57 aa11.19□□□□□ -0.62
LIG3-215ENST00000592690 LEPP41159 167 aa11.19□□□□□ -0.62
LIG3-215ENST00000592690 RANP62826 216 aaKnown RBP11.19□□□□□ -0.62
LIG3-215ENST00000592690 OR10G4Q8NGN3 311 aa11.19□□□□□ -0.62
LIG3-215ENST00000592690 OR10G9Q8NGN4 311 aa11.19□□□□□ -0.62
LIG3-215ENST00000592690 OR10G7Q8NGN6 311 aa11.19□□□□□ -0.62
LIG3-215ENST00000592690 OR2G3Q8NGZ4 309 aa11.19□□□□□ -0.62
LIG3-215ENST00000592690 NIPSNAP3BQ9BS92 247 aa11.19□□□□□ -0.62
LIG3-215ENST00000592690 PSMG3Q9BT73 122 aaPredicted RBP11.19□□□□□ -0.62
LIG3-215ENST00000592690 AGPAT4-IT1Q9H0P7 198 aa11.19□□□□□ -0.62
LIG3-215ENST00000592690 SH3BGRL3Q9H299 93 aa11.19□□□□□ -0.62
LIG3-215ENST00000592690 Q9H3A6 140 aa11.19□□□□□ -0.62
LIG3-215ENST00000592690 APLNQ9ULZ1 77 aa11.19□□□□□ -0.62
LIG3-215ENST00000592690 IGHV4-4A0A075B6R2 117 aa11.18□□□□□ -0.62
LIG3-215ENST00000592690 TEX48A0A1B0GUV7 120 aa11.18□□□□□ -0.62
LIG3-215ENST00000592690 A0A1W2PPV4 95 aa11.18□□□□□ -0.62
LIG3-215ENST00000592690 HMGB3O15347 200 aaKnown RBP11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms