RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 SYNJ2BPP57105 145 aa7.9□□□□□ -1.14
VPS4B-204ENST00000589604 GNG5P63218 68 aa7.9□□□□□ -1.14
VPS4B-204ENST00000589604 ADAMTSL5Q6ZMM2 481 aa7.9□□□□□ -1.14
VPS4B-204ENST00000589604 LYPD1Q8N2G4 141 aa7.9□□□□□ -1.14
VPS4B-204ENST00000589604 GPR82Q96P67 336 aa7.9□□□□□ -1.14
VPS4B-204ENST00000589604 SMIM7Q9BQ49 75 aa7.9□□□□□ -1.14
VPS4B-204ENST00000589604 SDF2L1Q9HCN8 221 aa7.9□□□□□ -1.14
VPS4B-204ENST00000589604 EPDR1Q9UM22 224 aa7.9□□□□□ -1.14
VPS4B-204ENST00000589604 MEGF8Q7Z7M0 2845 aa7.9□□□□□ -1.15
VPS4B-204ENST00000589604 ZNF727A8MUV8 499 aa7.89□□□□□ -1.15
VPS4B-204ENST00000589604 LINC01619G3V211 115 aa7.89□□□□□ -1.15
VPS4B-204ENST00000589604 ZNF253O75346 499 aa7.89□□□□□ -1.15
VPS4B-204ENST00000589604 FAM74A3Q4VXF1 159 aa7.89□□□□□ -1.15
VPS4B-204ENST00000589604 SVBPQ8N300 66 aa7.89□□□□□ -1.15
VPS4B-204ENST00000589604 DLX4Q92988 240 aaPredicted RBP7.89□□□□□ -1.15
VPS4B-204ENST00000589604 LINC00479Q96M42 142 aa7.89□□□□□ -1.15
VPS4B-204ENST00000589604 RHPN1-AS1Q9BWJ2 59 aa7.89□□□□□ -1.15
VPS4B-204ENST00000589604 UFC1Q9Y3C8 167 aa7.89□□□□□ -1.15
VPS4B-204ENST00000589604 NOTCH3Q9UM47 2321 aa7.89□□□□□ -1.15
VPS4B-204ENST00000589604 PEX7O00628 323 aa7.89□□□□□ -1.15
VPS4B-204ENST00000589604 SLC25A5P05141 298 aaKnown RBP7.89□□□□□ -1.15
VPS4B-204ENST00000589604 GALR1P47211 349 aa7.89□□□□□ -1.15
VPS4B-204ENST00000589604 ZNF674Q2M3X9 581 aa7.89□□□□□ -1.15
VPS4B-204ENST00000589604 C1QL4Q86Z23 238 aa7.89□□□□□ -1.15
VPS4B-204ENST00000589604 C5orf17Q8NAS9 161 aa7.89□□□□□ -1.15
VPS4B-204ENST00000589604 TCEAL7Q9BRU2 100 aa7.89□□□□□ -1.15
VPS4B-204ENST00000589604 ZNF331Q9NQX6 463 aaPredicted RBP7.89□□□□□ -1.15
VPS4B-204ENST00000589604 KLF12Q9Y4X4 402 aa7.89□□□□□ -1.15
VPS4B-204ENST00000589604 SORL1Q92673 2214 aa7.88□□□□□ -1.15
VPS4B-204ENST00000589604 TRAV8-2A0A0B4J237 113 aa7.88□□□□□ -1.15
VPS4B-204ENST00000589604 A0A1W2PS18 150 aa7.88□□□□□ -1.15
VPS4B-204ENST00000589604 M0R3E3 92 aa7.88□□□□□ -1.15
VPS4B-204ENST00000589604 IGLV2-8P01709 118 aa7.88□□□□□ -1.15
VPS4B-204ENST00000589604 HLA-DMBP28068 263 aa7.88□□□□□ -1.15
VPS4B-204ENST00000589604 RPL35P42766 123 aaKnown RBP7.88□□□□□ -1.15
VPS4B-204ENST00000589604 TMEM241Q24JQ0 296 aa7.88□□□□□ -1.15
VPS4B-204ENST00000589604 IGFL4Q6B9Z1 124 aa7.88□□□□□ -1.15
VPS4B-204ENST00000589604 WFDC9Q8NEX5 89 aa7.88□□□□□ -1.15
VPS4B-204ENST00000589604 TVP23CQ96ET8 276 aa7.88□□□□□ -1.15
VPS4B-204ENST00000589604 NIPSNAP3BQ9BS92 247 aa7.88□□□□□ -1.15
VPS4B-204ENST00000589604 AP5S1Q9NUS5 200 aa7.88□□□□□ -1.15
VPS4B-204ENST00000589604 NAT8Q9UHE5 227 aa7.88□□□□□ -1.15
VPS4B-204ENST00000589604 TRAV34A0A0B4J273 112 aa7.87□□□□□ -1.15
VPS4B-204ENST00000589604 C2orf70A6NJV1 201 aa7.87□□□□□ -1.15
VPS4B-204ENST00000589604 ZNF785A8K8V0 405 aa7.87□□□□□ -1.15
VPS4B-204ENST00000589604 SOCS3O14543 225 aa7.87□□□□□ -1.15
VPS4B-204ENST00000589604 SNAPINO95295 136 aa7.87□□□□□ -1.15
VPS4B-204ENST00000589604 IGLV2-11P01706 119 aa7.87□□□□□ -1.15
VPS4B-204ENST00000589604 TCRAP04437 139 aa7.87□□□□□ -1.15
VPS4B-204ENST00000589604 RPL23P62829 140 aaKnown RBP7.87□□□□□ -1.15
VPS4B-204ENST00000589604 HIST1H2BAQ96A08 127 aa7.87□□□□□ -1.15
VPS4B-204ENST00000589604 IGF2BP2-AS1Q96M15 143 aa7.87□□□□□ -1.15
VPS4B-204ENST00000589604 SELENOKQ9Y6D0 94 aa7.87□□□□□ -1.15
VPS4B-204ENST00000589604 DNAH3Q8TD57 4116 aa7.87□□□□□ -1.15
VPS4B-204ENST00000589604 C7orf77A4D0Y5 90 aa7.86□□□□□ -1.15
VPS4B-204ENST00000589604 HELTA6NFD8 242 aa7.86□□□□□ -1.15
VPS4B-204ENST00000589604 C9JCJ5 164 aa7.86□□□□□ -1.15
VPS4B-204ENST00000589604 ISLRO14498 428 aa7.86□□□□□ -1.15
VPS4B-204ENST00000589604 PRB4P10163 310 aaPredicted RBP7.86□□□□□ -1.15
VPS4B-204ENST00000589604 IGLL1P15814 213 aa7.86□□□□□ -1.15
VPS4B-204ENST00000589604 CBLN1P23435 193 aa7.86□□□□□ -1.15
VPS4B-204ENST00000589604 PSG9Q00887 426 aa7.86□□□□□ -1.15
VPS4B-204ENST00000589604 LINC01551Q86U37 167 aa7.86□□□□□ -1.15
VPS4B-204ENST00000589604 OCC1Q8TAD7 63 aa7.86□□□□□ -1.15
VPS4B-204ENST00000589604 DPF1Q92782 380 aa7.86□□□□□ -1.15
VPS4B-204ENST00000589604 ATG101Q9BSB4 218 aa7.86□□□□□ -1.15
VPS4B-204ENST00000589604 DIRC3C9JPN6 131 aa7.86□□□□□ -1.15
VPS4B-204ENST00000589604 K7EN84 100 aa7.86□□□□□ -1.15
VPS4B-204ENST00000589604 CSN3P07498 182 aa7.86□□□□□ -1.15
VPS4B-204ENST00000589604 FOLR2P14207 255 aa7.86□□□□□ -1.15
VPS4B-204ENST00000589604 MEOX2P50222 304 aa7.86□□□□□ -1.15
VPS4B-204ENST00000589604 TAS2R60P59551 318 aa7.86□□□□□ -1.15
VPS4B-204ENST00000589604 TMEM183BQ1AE95 376 aa7.86□□□□□ -1.15
VPS4B-204ENST00000589604 GRAMD2BQ96HH9 432 aa7.86□□□□□ -1.15
VPS4B-204ENST00000589604 C20orf173Q96LM9 149 aa7.86□□□□□ -1.15
VPS4B-204ENST00000589604 AURKAIP1Q9NWT8 199 aaPredicted RBP7.86□□□□□ -1.15
VPS4B-204ENST00000589604 MLXQ9UH92 298 aa7.86□□□□□ -1.15
VPS4B-204ENST00000589604 LY96Q9Y6Y9 160 aa7.86□□□□□ -1.15
VPS4B-204ENST00000589604 ZNF705FA8MVS1 300 aaPredicted RBP7.85□□□□□ -1.15
VPS4B-204ENST00000589604 PRAC2D3DTV9 90 aa7.85□□□□□ -1.15
VPS4B-204ENST00000589604 G3V4G9 280 aa7.85□□□□□ -1.15
VPS4B-204ENST00000589604 M0R036 132 aa7.85□□□□□ -1.15
VPS4B-204ENST00000589604 DNASE2O00115 360 aaPredicted RBP7.85□□□□□ -1.15
VPS4B-204ENST00000589604 AKR1C3P42330 323 aa7.85□□□□□ -1.15
VPS4B-204ENST00000589604 PNRC1Q12796 327 aaPredicted RBP7.85□□□□□ -1.15
VPS4B-204ENST00000589604 CENPWQ5EE01 88 aa7.85□□□□□ -1.15
VPS4B-204ENST00000589604 GOLT1AQ6ZVE7 132 aa7.85□□□□□ -1.15
VPS4B-204ENST00000589604 TCF24Q7RTU0 167 aa7.85□□□□□ -1.15
VPS4B-204ENST00000589604 RNF182Q8N6D2 247 aa7.85□□□□□ -1.15
VPS4B-204ENST00000589604 OR9G4Q8NGQ1 327 aa7.85□□□□□ -1.15
VPS4B-204ENST00000589604 SLC50A1Q9BRV3 221 aa7.85□□□□□ -1.15
VPS4B-204ENST00000589604 RPH3ALQ9UNE2 315 aa7.85□□□□□ -1.15
VPS4B-204ENST00000589604 TRAV8-1A0A0A6YYK1 113 aa7.84□□□□□ -1.15
VPS4B-204ENST00000589604 TRBV6-1A0A0K0K1D8 114 aa7.84□□□□□ -1.15
VPS4B-204ENST00000589604 OVOL1O14753 267 aa7.84□□□□□ -1.15
VPS4B-204ENST00000589604 MALP21145 153 aa7.84□□□□□ -1.15
VPS4B-204ENST00000589604 CNN1P51911 297 aaKnown RBP7.84□□□□□ -1.15
VPS4B-204ENST00000589604 RHEBQ15382 184 aa7.84□□□□□ -1.15
VPS4B-204ENST00000589604 LCN12Q6JVE5 192 aa7.84□□□□□ -1.15
VPS4B-204ENST00000589604 DCANP1Q8TF63 244 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms